RNA–Protein interactions for RNA: ENST00000374199.8

PRPF4-202, Transcript of pre-mRNA processing factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PRPF4, Length 3,212 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4-202ENST00000374199 RNF20Q5VTR2 975 aa15.07■□□□□ 0
PRPF4-202ENST00000374199 ZNF330Q9Y3S2 320 aaPredicted RBP15.07■□□□□ 0
PRPF4-202ENST00000374199 AMIGO3Q86WK7 504 aa15.07■□□□□ 0
PRPF4-202ENST00000374199 SEC62Q99442 399 aaKnown RBP15.07■□□□□ 0
PRPF4-202ENST00000374199 NIP7Q9Y221 180 aaKnown RBP eCLIP15.07■□□□□ 0
PRPF4-202ENST00000374199 CYP46A1Q9Y6A2 500 aa15.07■□□□□ 0
PRPF4-202ENST00000374199 DUOX1Q9NRD9 1551 aa15.07■□□□□ 0
PRPF4-202ENST00000374199 FSD2A1L4K1 749 aa15.07■□□□□ 0
PRPF4-202ENST00000374199 ZKSCAN1P17029 563 aaPredicted RBP15.07■□□□□ 0
PRPF4-202ENST00000374199 DNAJC2Q99543 621 aaKnown RBP15.07■□□□□ 0
PRPF4-202ENST00000374199 DLEC1Q9Y238 1755 aa15.07■□□□□ 0
PRPF4-202ENST00000374199 PDS5AQ29RF7 1337 aaKnown RBP15.07■□□□□ 0
PRPF4-202ENST00000374199 M0R2C6 588 aa15.06■□□□□ 0
PRPF4-202ENST00000374199 CYP21A2P08686 494 aa15.06■□□□□ 0
PRPF4-202ENST00000374199 EVCP57679 992 aa15.06■□□□□ 0
PRPF4-202ENST00000374199 METTL24Q5JXM2 366 aa15.06■□□□□ 0
PRPF4-202ENST00000374199 NEUROD6Q96NK8 337 aa15.06■□□□□ 0
PRPF4-202ENST00000374199 COL1A1P02452 1464 aaPredicted RBP15.06■□□□□ 0
PRPF4-202ENST00000374199 HSPD1P10809 573 aaKnown RBP15.06■□□□□ 0
PRPF4-202ENST00000374199 OSBP2Q969R2 916 aa15.06■□□□□ 0
PRPF4-202ENST00000374199 JAKMIP1Q96N16 626 aaKnown RBP15.06■□□□□ 0
PRPF4-202ENST00000374199 LARGE1O95461 756 aa15.05■□□□□ 0
PRPF4-202ENST00000374199 EXOSC10Q01780 885 aaKnown RBP15.05■□□□□ 0
PRPF4-202ENST00000374199 PDRG1Q9NUG6 133 aa15.05■□□□□ 0
PRPF4-202ENST00000374199 LAMB1P07942 1786 aa15.05■□□□□ -0
PRPF4-202ENST00000374199 UQCRFS1P1P0C7P4 283 aa15.05■□□□□ -0
PRPF4-202ENST00000374199 ADRA2BP18089 450 aa15.05■□□□□ -0
PRPF4-202ENST00000374199 ADD2P35612 726 aa15.05■□□□□ -0
PRPF4-202ENST00000374199 UBE3CQ15386 1083 aa15.05■□□□□ -0
PRPF4-202ENST00000374199 HCLS1P14317 486 aaPredicted RBP15.05■□□□□ -0
PRPF4-202ENST00000374199 TTF1Q15361 905 aaPredicted RBP15.05■□□□□ -0
PRPF4-202ENST00000374199 LRRFIP1Q32MZ4 808 aaKnown RBP15.05■□□□□ -0
PRPF4-202ENST00000374199 TTC39AQ5SRH9 613 aa15.05■□□□□ -0
PRPF4-202ENST00000374199 TBC1D9BQ66K14 1250 aa15.05■□□□□ -0
PRPF4-202ENST00000374199 CCDC102BQ68D86 513 aa15.05■□□□□ -0
PRPF4-202ENST00000374199 STOX1Q6ZVD7 989 aa15.05■□□□□ -0
PRPF4-202ENST00000374199 C3orf67Q6ZVT6 689 aa15.05■□□□□ -0
PRPF4-202ENST00000374199 APPBP2Q92624 585 aa15.05■□□□□ -0
PRPF4-202ENST00000374199 WDR19Q8NEZ3 1342 aa15.05■□□□□ -0
PRPF4-202ENST00000374199 ANKRD31Q8N7Z5 1873 aa15.04■□□□□ -0
PRPF4-202ENST00000374199 ZAP70P43403 619 aa15.04■□□□□ -0
PRPF4-202ENST00000374199 ANKRD1Q15327 319 aa15.04■□□□□ -0
PRPF4-202ENST00000374199 TMEM87AQ8NBN3 555 aa15.04■□□□□ -0
PRPF4-202ENST00000374199 BSDC1Q9NW68 430 aaPredicted RBP15.04■□□□□ -0
PRPF4-202ENST00000374199 ECM29Q5VYK3 1845 aa15.04■□□□□ -0
PRPF4-202ENST00000374199 PDIA4P13667 645 aaKnown RBP15.04■□□□□ -0
PRPF4-202ENST00000374199 CCDC129Q6ZRS4 1044 aa15.04■□□□□ -0
PRPF4-202ENST00000374199 TM4SF1P30408 202 aa15.04■□□□□ -0
PRPF4-202ENST00000374199 SKOR2Q2VWA4 1001 aaPredicted RBP15.04■□□□□ -0
PRPF4-202ENST00000374199 ERFEQ4G0M1 354 aa15.04■□□□□ -0
PRPF4-202ENST00000374199 SEC31BQ9NQW1 1179 aa15.04■□□□□ -0
PRPF4-202ENST00000374199 TPCN1Q9ULQ1 816 aa15.04■□□□□ -0
PRPF4-202ENST00000374199 TRAK2O60296 914 aa15.03■□□□□ -0
PRPF4-202ENST00000374199 ME3Q16798 604 aa15.03■□□□□ -0
PRPF4-202ENST00000374199 SEPT12Q8IYM1 358 aa15.03■□□□□ -0
PRPF4-202ENST00000374199 NYXQ9GZU5 481 aa15.03■□□□□ -0
PRPF4-202ENST00000374199 LMBRD1Q9NUN5 540 aa15.03■□□□□ -0
PRPF4-202ENST00000374199 TAF7LQ5H9L4 462 aa15.03■□□□□ -0
PRPF4-202ENST00000374199 CNNM1Q9NRU3 951 aa15.03■□□□□ -0
PRPF4-202ENST00000374199 HSP90AA1P07900 732 aaKnown RBP15.02■□□□□ -0
PRPF4-202ENST00000374199 HMGB1P09429 215 aaKnown RBP15.02■□□□□ -0
PRPF4-202ENST00000374199 CDC5LQ99459 802 aaKnown RBP15.02■□□□□ -0
PRPF4-202ENST00000374199 CCNL1Q9UK58 526 aaPredicted RBP15.02■□□□□ -0
PRPF4-202ENST00000374199 CARMIL3Q8ND23 1372 aa15.02■□□□□ -0
PRPF4-202ENST00000374199 CPA1P15085 419 aa15.02□□□□□ -0.01
PRPF4-202ENST00000374199 SLC27A3Q5K4L6 730 aa15.02□□□□□ -0.01
PRPF4-202ENST00000374199 PIH1D3Q9NQM4 214 aaKnown RBP15.02□□□□□ -0.01
PRPF4-202ENST00000374199 LRRC4BQ9NT99 713 aa15.02□□□□□ -0.01
PRPF4-202ENST00000374199 FOXD4L1Q9NU39 408 aa15.02□□□□□ -0.01
PRPF4-202ENST00000374199 EP400Q96L91 3159 aa15.02□□□□□ -0.01
PRPF4-202ENST00000374199 PHKA1P46020 1223 aa15.02□□□□□ -0.01
PRPF4-202ENST00000374199 ALX1Q15699 326 aa15.02□□□□□ -0.01
PRPF4-202ENST00000374199 SLFNL1Q499Z3 407 aa15.02□□□□□ -0.01
PRPF4-202ENST00000374199 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.02□□□□□ -0.01
PRPF4-202ENST00000374199 DDX60LQ5H9U9 1706 aaKnown RBP15.01□□□□□ -0.01
PRPF4-202ENST00000374199 KLHL40Q2TBA0 621 aa15.01□□□□□ -0.01
PRPF4-202ENST00000374199 ARHGEF1Q92888 912 aaKnown RBP15.01□□□□□ -0.01
PRPF4-202ENST00000374199 CCDC85AQ96PX6 553 aaPredicted RBP15.01□□□□□ -0.01
PRPF4-202ENST00000374199 CCDC88AQ3V6T2 1871 aa15.01□□□□□ -0.01
PRPF4-202ENST00000374199 BLOC1S2Q6QNY1 142 aa15.01□□□□□ -0.01
PRPF4-202ENST00000374199 RGS22Q8NE09 1264 aa15.01□□□□□ -0.01
PRPF4-202ENST00000374199 ZNF646O15015 1829 aaPredicted RBP15.01□□□□□ -0.01
PRPF4-202ENST00000374199 IGSF3O75054 1194 aa15□□□□□ -0.01
PRPF4-202ENST00000374199 SLC5A1P13866 664 aa15□□□□□ -0.01
PRPF4-202ENST00000374199 ZSCAN25Q6NSZ9 544 aa15□□□□□ -0.01
PRPF4-202ENST00000374199 NEK1Q96PY6 1258 aa15□□□□□ -0.01
PRPF4-202ENST00000374199 ISY1Q9ULR0 285 aaKnown RBP15□□□□□ -0.01
PRPF4-202ENST00000374199 SALL1Q9NSC2 1324 aa15□□□□□ -0.01
PRPF4-202ENST00000374199 CHRNDQ07001 517 aa15□□□□□ -0.01
PRPF4-202ENST00000374199 PI16Q6UXB8 463 aa15□□□□□ -0.01
PRPF4-202ENST00000374199 NBPF3Q9H094 633 aa15□□□□□ -0.01
PRPF4-202ENST00000374199 PUS7LQ9H0K6 701 aaKnown RBP15□□□□□ -0.01
PRPF4-202ENST00000374199 TCHHQ07283 1943 aa15□□□□□ -0.01
PRPF4-202ENST00000374199 RASGRF1Q13972 1273 aa15□□□□□ -0.01
PRPF4-202ENST00000374199 UBE4AQ14139 1066 aa15□□□□□ -0.01
PRPF4-202ENST00000374199 PNPLA7Q6ZV29 1317 aa14.99□□□□□ -0.01
PRPF4-202ENST00000374199 TMED8Q6PL24 325 aaPredicted RBP14.99□□□□□ -0.01
PRPF4-202ENST00000374199 KLHL34Q8N239 644 aa14.99□□□□□ -0.01
PRPF4-202ENST00000374199 SPATA5Q8NB90 893 aa14.99□□□□□ -0.01
PRPF4-202ENST00000374199 NID2Q14112 1375 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms