RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ANO10Q9NW15 660 aa19.18■□□□□ 0.66
SDC4-201ENST00000372733 ATP5J2-PTCD1G3V325 749 aa19.18■□□□□ 0.66
SDC4-201ENST00000372733 PTCD1O75127 700 aaKnown RBP19.18■□□□□ 0.66
SDC4-201ENST00000372733 SH3TC1Q8TE82 1336 aa19.17■□□□□ 0.66
SDC4-201ENST00000372733 GOLIM4O00461 696 aa19.17■□□□□ 0.66
SDC4-201ENST00000372733 ANKRD13DQ6ZTN6 518 aa19.17■□□□□ 0.66
SDC4-201ENST00000372733 CHST3Q7LGC8 479 aa19.17■□□□□ 0.66
SDC4-201ENST00000372733 CEP57L1Q8IYX8 460 aa19.17■□□□□ 0.66
SDC4-201ENST00000372733 ZNF496Q96IT1 587 aaPredicted RBP19.17■□□□□ 0.66
SDC4-201ENST00000372733 DDX41Q9UJV9 622 aaKnown RBP19.17■□□□□ 0.66
SDC4-201ENST00000372733 ZNF396Q96N95 335 aaPredicted RBP19.17■□□□□ 0.66
SDC4-201ENST00000372733 KDM6AO15550 1401 aaPredicted RBP19.17■□□□□ 0.66
SDC4-201ENST00000372733 SALL1Q9NSC2 1324 aa19.16■□□□□ 0.66
SDC4-201ENST00000372733 KIF20AO95235 890 aa19.16■□□□□ 0.66
SDC4-201ENST00000372733 RABL6Q3YEC7 729 aaPredicted RBP19.16■□□□□ 0.66
SDC4-201ENST00000372733 ADAMTS7Q9UKP4 1686 aa19.16■□□□□ 0.66
SDC4-201ENST00000372733 HMGB1P09429 215 aaKnown RBP19.16■□□□□ 0.66
SDC4-201ENST00000372733 SLC52A2Q9HAB3 445 aa19.16■□□□□ 0.66
SDC4-201ENST00000372733 EXOSC10Q01780 885 aaKnown RBP19.15■□□□□ 0.66
SDC4-201ENST00000372733 LRP10Q7Z4F1 713 aa19.15■□□□□ 0.66
SDC4-201ENST00000372733 CCAR2Q8N163 923 aaKnown RBP19.15■□□□□ 0.66
SDC4-201ENST00000372733 NFATC2IPQ8NCF5 419 aa19.15■□□□□ 0.66
SDC4-201ENST00000372733 KIF18AQ8NI77 898 aa19.15■□□□□ 0.66
SDC4-201ENST00000372733 CAMTA1Q9Y6Y1 1673 aa19.15■□□□□ 0.66
SDC4-201ENST00000372733 ORAI2Q96SN7 254 aa19.15■□□□□ 0.66
SDC4-201ENST00000372733 SLIT3O75094 1523 aa19.14■□□□□ 0.66
SDC4-201ENST00000372733 A0A087WZG4 1122 aa19.14■□□□□ 0.65
SDC4-201ENST00000372733 E7EWF7 191 aa19.14■□□□□ 0.65
SDC4-201ENST00000372733 NBPF11Q86T75 865 aa19.14■□□□□ 0.65
SDC4-201ENST00000372733 PCDHA7Q9UN72 937 aa19.14■□□□□ 0.65
SDC4-201ENST00000372733 CARMIL3Q8ND23 1372 aa19.14■□□□□ 0.65
SDC4-201ENST00000372733 FER1L4A9Z1Z3 1794 aa19.14■□□□□ 0.65
SDC4-201ENST00000372733 ERBB3P21860 1342 aa19.14■□□□□ 0.65
SDC4-201ENST00000372733 A0A1B0GVL5 298 aa19.14■□□□□ 0.65
SDC4-201ENST00000372733 KMT5BQ4FZB7 885 aa19.14■□□□□ 0.65
SDC4-201ENST00000372733 FMR1NBQ8N0W7 255 aaPredicted RBP19.14■□□□□ 0.65
SDC4-201ENST00000372733 MRPS27Q92552 414 aaKnown RBP19.14■□□□□ 0.65
SDC4-201ENST00000372733 NEUROD6Q96NK8 337 aa19.14■□□□□ 0.65
SDC4-201ENST00000372733 AGXT2Q9BYV1 514 aa19.14■□□□□ 0.65
SDC4-201ENST00000372733 PAG1Q9NWQ8 432 aa19.14■□□□□ 0.65
SDC4-201ENST00000372733 ABCC6O95255 1503 aa19.13■□□□□ 0.65
SDC4-201ENST00000372733 PALLDQ8WX93 1383 aa19.13■□□□□ 0.65
SDC4-201ENST00000372733 PDIA3P30101 505 aaKnown RBP19.13■□□□□ 0.65
SDC4-201ENST00000372733 OTUD7BQ6GQQ9 843 aa19.13■□□□□ 0.65
SDC4-201ENST00000372733 AFDNP55196 1824 aaKnown RBP19.13■□□□□ 0.65
SDC4-201ENST00000372733 ELF2Q15723 593 aa19.13■□□□□ 0.65
SDC4-201ENST00000372733 DPCR1Q3MIW9 517 aa19.13■□□□□ 0.65
SDC4-201ENST00000372733 LMBR1LQ6UX01 489 aa19.13■□□□□ 0.65
SDC4-201ENST00000372733 SDF4Q9BRK5 362 aa19.13■□□□□ 0.65
SDC4-201ENST00000372733 GPHNQ9NQX3 736 aaPredicted RBP19.13■□□□□ 0.65
SDC4-201ENST00000372733 ZNF397Q8NF99 534 aaPredicted RBP19.12■□□□□ 0.65
SDC4-201ENST00000372733 DSCC1Q9BVC3 393 aa19.12■□□□□ 0.65
SDC4-201ENST00000372733 NDUFA8P51970 172 aa19.12■□□□□ 0.65
SDC4-201ENST00000372733 ATL3Q6DD88 541 aa19.12■□□□□ 0.65
SDC4-201ENST00000372733 TTLL5Q6EMB2 1281 aa19.12■□□□□ 0.65
SDC4-201ENST00000372733 MAST3O60307 1309 aa19.12■□□□□ 0.65
SDC4-201ENST00000372733 HSPD1P10809 573 aaKnown RBP19.11■□□□□ 0.65
SDC4-201ENST00000372733 FDPSP14324 419 aaKnown RBP19.11■□□□□ 0.65
SDC4-201ENST00000372733 ZMYM1Q5SVZ6 1142 aa19.11■□□□□ 0.65
SDC4-201ENST00000372733 ZNF771Q7L3S4 317 aaPredicted RBP19.11■□□□□ 0.65
SDC4-201ENST00000372733 NAT10Q9H0A0 1025 aaKnown RBP19.11■□□□□ 0.65
SDC4-201ENST00000372733 HELLSQ9NRZ9 838 aa19.11■□□□□ 0.65
SDC4-201ENST00000372733 MORC2Q9Y6X9 1032 aaPredicted RBP19.11■□□□□ 0.65
SDC4-201ENST00000372733 FBXO38Q6PIJ6 1188 aa19.11■□□□□ 0.65
SDC4-201ENST00000372733 LMTK3Q96Q04 1460 aa19.1■□□□□ 0.65
SDC4-201ENST00000372733 CASP7P55210 303 aa19.1■□□□□ 0.65
SDC4-201ENST00000372733 TIMM10P62072 90 aa19.1■□□□□ 0.65
SDC4-201ENST00000372733 RAPGEF4Q8WZA2 1011 aa19.1■□□□□ 0.65
SDC4-201ENST00000372733 CLIC4Q9Y696 253 aa19.1■□□□□ 0.65
SDC4-201ENST00000372733 SMC2O95347 1197 aa19.1■□□□□ 0.65
SDC4-201ENST00000372733 GSDMDP57764 484 aa19.1■□□□□ 0.65
SDC4-201ENST00000372733 SYTL4Q96C24 671 aaPredicted RBP19.1■□□□□ 0.65
SDC4-201ENST00000372733 ERO1AQ96HE7 468 aa19.1■□□□□ 0.65
SDC4-201ENST00000372733 NEDD4P46934 1319 aa19.1■□□□□ 0.65
SDC4-201ENST00000372733 BIN1O00499 593 aa19.09■□□□□ 0.65
SDC4-201ENST00000372733 XPO4Q9C0E2 1151 aaKnown RBP19.09■□□□□ 0.65
SDC4-201ENST00000372733 OSBPL5Q9H0X9 879 aaPredicted RBP19.09■□□□□ 0.65
SDC4-201ENST00000372733 RTEL1Q9NZ71 1219 aa19.09■□□□□ 0.65
SDC4-201ENST00000372733 RGPD5Q99666 1765 aa19.09■□□□□ 0.65
SDC4-201ENST00000372733 PHKG2P15735 406 aa19.09■□□□□ 0.65
SDC4-201ENST00000372733 ZC3H6P61129 1189 aaKnown RBP19.09■□□□□ 0.65
SDC4-201ENST00000372733 GABPB1Q06547 395 aaPredicted RBP19.09■□□□□ 0.65
SDC4-201ENST00000372733 STK38Q15208 465 aa19.09■□□□□ 0.65
SDC4-201ENST00000372733 E4F1Q66K89 784 aaPredicted RBP19.09■□□□□ 0.65
SDC4-201ENST00000372733 ATG9AQ7Z3C6 839 aa19.09■□□□□ 0.65
SDC4-201ENST00000372733 TMC6Q7Z403 805 aa19.09■□□□□ 0.65
SDC4-201ENST00000372733 ZNF274Q96GC6 653 aaPredicted RBP19.09■□□□□ 0.65
SDC4-201ENST00000372733 IFNKQ9P0W0 207 aa19.09■□□□□ 0.65
SDC4-201ENST00000372733 SCN11AQ9UI33 1791 aa19.08■□□□□ 0.65
SDC4-201ENST00000372733 ARFGEF2Q9Y6D5 1785 aa19.08■□□□□ 0.65
SDC4-201ENST00000372733 M0R2C6 588 aa19.08■□□□□ 0.65
SDC4-201ENST00000372733 POLR3DP05423 398 aaPredicted RBP19.08■□□□□ 0.65
SDC4-201ENST00000372733 SNRPA1P09661 255 aaKnown RBP19.08■□□□□ 0.65
SDC4-201ENST00000372733 ADALQ6DHV7 355 aa19.08■□□□□ 0.65
SDC4-201ENST00000372733 LINC00301Q8NCQ3 95 aa19.08■□□□□ 0.65
SDC4-201ENST00000372733 FMNL2Q96PY5 1086 aa19.08■□□□□ 0.65
SDC4-201ENST00000372733 NLRP2Q9NX02 1062 aa19.08■□□□□ 0.65
SDC4-201ENST00000372733 NPHP1O15259 732 aa19.08■□□□□ 0.64
SDC4-201ENST00000372733 SLU7O95391 586 aaKnown RBP19.08■□□□□ 0.64
SDC4-201ENST00000372733 SF3A1Q15459 793 aaKnown RBP19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms