RNA–Protein interactions for RNA: ENST00000371429.3

NDC1-201, Transcript of NDC1 transmembrane nucleoporin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDC1, Length 5,134 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDC1-201ENST00000371429 BICD1Q96G01 975 aa16.91■□□□□ 0.3
NDC1-201ENST00000371429 GOLGA6L10A6NI86 522 aa16.91■□□□□ 0.3
NDC1-201ENST00000371429 EIF6P56537 245 aaKnown RBP16.91■□□□□ 0.3
NDC1-201ENST00000371429 TDRD12Q587J7 1177 aaKnown RBP16.91■□□□□ 0.3
NDC1-201ENST00000371429 RTL9Q8NET4 1388 aa16.9■□□□□ 0.3
NDC1-201ENST00000371429 CFAP65Q6ZU64 1925 aaKnown RBP16.9■□□□□ 0.3
NDC1-201ENST00000371429 SEPT7Q16181 437 aaKnown RBP16.9■□□□□ 0.3
NDC1-201ENST00000371429 CHST3Q7LGC8 479 aa16.9■□□□□ 0.3
NDC1-201ENST00000371429 ECM2O94769 699 aaPredicted RBP16.9■□□□□ 0.3
NDC1-201ENST00000371429 CALML3P27482 149 aa16.9■□□□□ 0.3
NDC1-201ENST00000371429 USP8P40818 1118 aa16.9■□□□□ 0.3
NDC1-201ENST00000371429 ZNF594Q96JF6 807 aaPredicted RBP16.9■□□□□ 0.3
NDC1-201ENST00000371429 KLHDC4Q8TBB5 520 aa16.89■□□□□ 0.3
NDC1-201ENST00000371429 CCDC171Q6TFL3 1326 aa16.89■□□□□ 0.29
NDC1-201ENST00000371429 NUP88Q99567 741 aaPredicted RBP16.89■□□□□ 0.29
NDC1-201ENST00000371429 SH2D4AQ9H788 454 aa16.89■□□□□ 0.29
NDC1-201ENST00000371429 CPLX3Q8WVH0 158 aa16.89■□□□□ 0.29
NDC1-201ENST00000371429 CCDC174Q6PII3 467 aa16.88■□□□□ 0.29
NDC1-201ENST00000371429 TNNI3KQ59H18 835 aa16.88■□□□□ 0.29
NDC1-201ENST00000371429 WDR66Q8TBY9 1149 aa16.88■□□□□ 0.29
NDC1-201ENST00000371429 DBNDD2Q9BQY9 259 aa16.88■□□□□ 0.29
NDC1-201ENST00000371429 TRPC5Q9UL62 973 aaPredicted RBP16.88■□□□□ 0.29
NDC1-201ENST00000371429 FPGT-TNNI3KV9GXZ4 949 aa16.88■□□□□ 0.29
NDC1-201ENST00000371429 MAST3O60307 1309 aa16.88■□□□□ 0.29
NDC1-201ENST00000371429 USP19O94966 1318 aa16.88■□□□□ 0.29
NDC1-201ENST00000371429 TAF5LO75529 589 aa16.88■□□□□ 0.29
NDC1-201ENST00000371429 RAB3GAP1Q15042 981 aa16.88■□□□□ 0.29
NDC1-201ENST00000371429 SUPT20HQ8NEM7 779 aa16.88■□□□□ 0.29
NDC1-201ENST00000371429 XAGE2Q96GT9 111 aa16.88■□□□□ 0.29
NDC1-201ENST00000371429 QTRT2Q9H974 415 aaKnown RBP16.88■□□□□ 0.29
NDC1-201ENST00000371429 EXOC1Q9NV70 894 aa16.88■□□□□ 0.29
NDC1-201ENST00000371429 SAP30BPQ9UHR5 308 aaKnown RBP16.88■□□□□ 0.29
NDC1-201ENST00000371429 SYKP43405 635 aa16.88■□□□□ 0.29
NDC1-201ENST00000371429 EIF4A1P60842 406 aaKnown RBP16.88■□□□□ 0.29
NDC1-201ENST00000371429 GCKRQ14397 625 aa16.88■□□□□ 0.29
NDC1-201ENST00000371429 PTPRTO14522 1441 aa16.88■□□□□ 0.29
NDC1-201ENST00000371429 ZSCAN22P10073 491 aaPredicted RBP16.87■□□□□ 0.29
NDC1-201ENST00000371429 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.87■□□□□ 0.291e-7■■■□□ 15.5
NDC1-201ENST00000371429 RAD50Q92878 1312 aa16.87■□□□□ 0.29
NDC1-201ENST00000371429 ERLIN1O75477 346 aa16.87■□□□□ 0.29
NDC1-201ENST00000371429 PHKG2P15735 406 aa16.87■□□□□ 0.29
NDC1-201ENST00000371429 CREB3L3Q68CJ9 461 aa16.87■□□□□ 0.29
NDC1-201ENST00000371429 NPHP4O75161 1426 aaPredicted RBP16.87■□□□□ 0.29
NDC1-201ENST00000371429 ZBTB7BO15156 539 aaPredicted RBP16.87■□□□□ 0.29
NDC1-201ENST00000371429 FAM114A1Q8IWE2 563 aa16.87■□□□□ 0.29
NDC1-201ENST00000371429 ZNF408Q9H9D4 720 aa16.87■□□□□ 0.29
NDC1-201ENST00000371429 TRIM35Q9UPQ4 493 aa16.87■□□□□ 0.29
NDC1-201ENST00000371429 ISM2Q6H9L7 571 aa16.87■□□□□ 0.29
NDC1-201ENST00000371429 DHX32Q7L7V1 743 aaKnown RBP16.87■□□□□ 0.29
NDC1-201ENST00000371429 FLAD1Q8NFF5 587 aa16.87■□□□□ 0.29
NDC1-201ENST00000371429 KCNG4Q8TDN1 519 aa16.87■□□□□ 0.29
NDC1-201ENST00000371429 YEATS4O95619 227 aa16.86■□□□□ 0.29
NDC1-201ENST00000371429 ALDH1B1P30837 517 aa16.86■□□□□ 0.29
NDC1-201ENST00000371429 STAT6P42226 847 aa16.86■□□□□ 0.29
NDC1-201ENST00000371429 TRIM75PA6NK02 468 aa16.86■□□□□ 0.29
NDC1-201ENST00000371429 STX1AQ16623 288 aa16.86■□□□□ 0.29
NDC1-201ENST00000371429 PLEKHM2Q8IWE5 1019 aa16.86■□□□□ 0.29
NDC1-201ENST00000371429 SMC5Q8IY18 1101 aa16.86■□□□□ 0.29
NDC1-201ENST00000371429 LPIN2Q92539 896 aa16.86■□□□□ 0.29
NDC1-201ENST00000371429 PICK1Q9NRD5 415 aa16.86■□□□□ 0.29
NDC1-201ENST00000371429 ZSCAN12O43309 604 aa16.86■□□□□ 0.29
NDC1-201ENST00000371429 GNA11P29992 359 aa16.86■□□□□ 0.29
NDC1-201ENST00000371429 PDE6BP35913 854 aa16.86■□□□□ 0.29
NDC1-201ENST00000371429 DRC1Q96MC2 740 aa16.86■□□□□ 0.29
NDC1-201ENST00000371429 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.86■□□□□ 0.29
NDC1-201ENST00000371429 HELLSQ9NRZ9 838 aa16.86■□□□□ 0.29
NDC1-201ENST00000371429 UBE2HP62256 183 aa16.86■□□□□ 0.29
NDC1-201ENST00000371429 RMND1Q9NWS8 449 aa16.85■□□□□ 0.29
NDC1-201ENST00000371429 ANKRD62A6NC57 917 aa16.85■□□□□ 0.29
NDC1-201ENST00000371429 TRIM47Q96LD4 638 aa16.85■□□□□ 0.29
NDC1-201ENST00000371429 PLEKHG1Q9ULL1 1385 aa16.85■□□□□ 0.29
NDC1-201ENST00000371429 APOBRQ0VD83 1088 aa16.85■□□□□ 0.29
NDC1-201ENST00000371429 SUCLG2Q96I99 432 aa16.85■□□□□ 0.29
NDC1-201ENST00000371429 CHMLP26374 656 aa16.85■□□□□ 0.29
NDC1-201ENST00000371429 AFMP43652 599 aa16.85■□□□□ 0.29
NDC1-201ENST00000371429 TCIRG1Q13488 830 aa16.85■□□□□ 0.29
NDC1-201ENST00000371429 CENPHQ9H3R5 247 aa16.85■□□□□ 0.29
NDC1-201ENST00000371429 BRPF3Q9ULD4 1205 aa16.85■□□□□ 0.29
NDC1-201ENST00000371429 CFAP74Q9C0B2 1584 aa16.84■□□□□ 0.29
NDC1-201ENST00000371429 SAMD9Q5K651 1589 aa16.84■□□□□ 0.29
NDC1-201ENST00000371429 MSL1Q68DK7 614 aa16.84■□□□□ 0.29
NDC1-201ENST00000371429 TCHPQ9BT92 498 aa16.84■□□□□ 0.29
NDC1-201ENST00000371429 METP08581 1390 aa16.84■□□□□ 0.29
NDC1-201ENST00000371429 USO1O60763 962 aaKnown RBP16.84■□□□□ 0.29
NDC1-201ENST00000371429 PARP1P09874 1014 aaKnown RBP16.84■□□□□ 0.29
NDC1-201ENST00000371429 ZNF165P49910 485 aa16.84■□□□□ 0.29
NDC1-201ENST00000371429 RPS8P62241 208 aaKnown RBP16.84■□□□□ 0.29
NDC1-201ENST00000371429 NIM1KQ8IY84 436 aa16.84■□□□□ 0.29
NDC1-201ENST00000371429 ZKSCAN3Q9BRR0 538 aa16.84■□□□□ 0.29
NDC1-201ENST00000371429 CLIP2Q9UDT6 1046 aa16.84■□□□□ 0.29
NDC1-201ENST00000371429 PUF60Q9UHX1 559 aaKnown RBP16.84■□□□□ 0.29
NDC1-201ENST00000371429 USP37Q86T82 979 aa16.84■□□□□ 0.29
NDC1-201ENST00000371429 MACROD2A1Z1Q3 448 aa16.83■□□□□ 0.29
NDC1-201ENST00000371429 KRT79Q5XKE5 535 aa16.83■□□□□ 0.29
NDC1-201ENST00000371429 FERMT2Q96AC1 680 aa16.83■□□□□ 0.29
NDC1-201ENST00000371429 ARMT1Q9H993 441 aa16.83■□□□□ 0.29
NDC1-201ENST00000371429 EFCAB6Q5THR3 1501 aa16.83■□□□□ 0.28
NDC1-201ENST00000371429 MARCKSP29966 332 aaPredicted RBP16.83■□□□□ 0.28
NDC1-201ENST00000371429 KIF5CO60282 957 aa16.83■□□□□ 0.28
NDC1-201ENST00000371429 RXRAP19793 462 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms