RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 POTEB2H3BUK9 544 aa11.29□□□□□ -0.6
HMGB1P39-201ENST00000366304 FKTNO75072 461 aa11.29□□□□□ -0.6
HMGB1P39-201ENST00000366304 ECM2O94769 699 aaPredicted RBP11.29□□□□□ -0.6
HMGB1P39-201ENST00000366304 TBC1D16Q8TBP0 767 aa11.29□□□□□ -0.6
HMGB1P39-201ENST00000366304 GMLQ99445 158 aa11.29□□□□□ -0.6
HMGB1P39-201ENST00000366304 CEP290O15078 2479 aa11.29□□□□□ -0.6
HMGB1P39-201ENST00000366304 FKBP1BP68106 108 aa11.28□□□□□ -0.6
HMGB1P39-201ENST00000366304 CFHR5Q9BXR6 569 aa11.28□□□□□ -0.6
HMGB1P39-201ENST00000366304 CUL9Q8IWT3 2517 aa11.27□□□□□ -0.61
HMGB1P39-201ENST00000366304 WTIPA6NIX2 430 aaPredicted RBP11.27□□□□□ -0.61
HMGB1P39-201ENST00000366304 PTPN12Q05209 780 aaKnown RBP11.27□□□□□ -0.61
HMGB1P39-201ENST00000366304 OTOP1Q7RTM1 612 aa11.27□□□□□ -0.61
HMGB1P39-201ENST00000366304 TRMT112Q9UI30 125 aaKnown RBP11.27□□□□□ -0.61
HMGB1P39-201ENST00000366304 A0A0C4DFX4 3053 aa11.27□□□□□ -0.61
HMGB1P39-201ENST00000366304 DDX60Q8IY21 1712 aaKnown RBP11.26□□□□□ -0.61
HMGB1P39-201ENST00000366304 RIOK3O14730 519 aaKnown RBP11.26□□□□□ -0.61
HMGB1P39-201ENST00000366304 SEC24BO95487 1268 aa11.26□□□□□ -0.61
HMGB1P39-201ENST00000366304 NBPF9Q3BBW0 867 aa11.26□□□□□ -0.61
HMGB1P39-201ENST00000366304 RSBN1LQ6PCB5 846 aaPredicted RBP11.26□□□□□ -0.61
HMGB1P39-201ENST00000366304 COPS6Q7L5N1 327 aa11.26□□□□□ -0.61
HMGB1P39-201ENST00000366304 MXD3Q9BW11 206 aa11.26□□□□□ -0.61
HMGB1P39-201ENST00000366304 FZD1Q9UP38 647 aa11.26□□□□□ -0.61
HMGB1P39-201ENST00000366304 TRIM17Q9Y577 477 aa11.26□□□□□ -0.61
HMGB1P39-201ENST00000366304 ERBB4Q15303 1308 aa11.26□□□□□ -0.61
HMGB1P39-201ENST00000366304 SH3TC1Q8TE82 1336 aa11.26□□□□□ -0.61
HMGB1P39-201ENST00000366304 ZNF609O15014 1411 aa11.26□□□□□ -0.61
HMGB1P39-201ENST00000366304 EIF2S2P20042 333 aaKnown RBP11.25□□□□□ -0.61
HMGB1P39-201ENST00000366304 AIMP1Q12904 312 aaKnown RBP11.25□□□□□ -0.61
HMGB1P39-201ENST00000366304 TCIRG1Q13488 830 aa11.25□□□□□ -0.61
HMGB1P39-201ENST00000366304 IER5LQ5T953 404 aa11.25□□□□□ -0.61
HMGB1P39-201ENST00000366304 TMC4Q7Z404 712 aa11.25□□□□□ -0.61
HMGB1P39-201ENST00000366304 XAGE3Q8WTP9 111 aa11.25□□□□□ -0.61
HMGB1P39-201ENST00000366304 NECTIN2Q92692 538 aa11.25□□□□□ -0.61
HMGB1P39-201ENST00000366304 OTUD5Q96G74 571 aa11.25□□□□□ -0.61
HMGB1P39-201ENST00000366304 FAM89AQ96GI7 184 aa11.25□□□□□ -0.61
HMGB1P39-201ENST00000366304 MYOZ2Q9NPC6 264 aa11.25□□□□□ -0.61
HMGB1P39-201ENST00000366304 PITPNM2Q9BZ72 1349 aa11.25□□□□□ -0.61
HMGB1P39-201ENST00000366304 KIAA0100Q14667 2235 aaKnown RBP11.25□□□□□ -0.61
HMGB1P39-201ENST00000366304 H0YGN5 161 aa11.24□□□□□ -0.61
HMGB1P39-201ENST00000366304 DLL1O00548 723 aa11.24□□□□□ -0.61
HMGB1P39-201ENST00000366304 SF3B3Q15393 1217 aaKnown RBP11.24□□□□□ -0.61
HMGB1P39-201ENST00000366304 SPRYD7Q5W111 196 aa11.24□□□□□ -0.61
HMGB1P39-201ENST00000366304 PNISRQ8TF01 805 aaKnown RBP11.24□□□□□ -0.61
HMGB1P39-201ENST00000366304 RBBP6Q7Z6E9 1792 aaKnown RBP11.23□□□□□ -0.61
HMGB1P39-201ENST00000366304 IGF2BP3O00425 579 aaKnown RBP eCLIP11.23□□□□□ -0.61
HMGB1P39-201ENST00000366304 USP17L8P0C7I0 530 aa11.23□□□□□ -0.61
HMGB1P39-201ENST00000366304 PPP2R1AP30153 589 aa11.23□□□□□ -0.61
HMGB1P39-201ENST00000366304 GOLGA2Q08379 1002 aa11.23□□□□□ -0.61
HMGB1P39-201ENST00000366304 PRKG1Q13976 671 aa11.23□□□□□ -0.61
HMGB1P39-201ENST00000366304 INTS3Q68E01 1043 aaKnown RBP11.23□□□□□ -0.61
HMGB1P39-201ENST00000366304 AGBL3Q8NEM8 1001 aa11.23□□□□□ -0.61
HMGB1P39-201ENST00000366304 ARMC5Q96C12 935 aa11.23□□□□□ -0.61
HMGB1P39-201ENST00000366304 CFAP53Q96M91 514 aa11.23□□□□□ -0.61
HMGB1P39-201ENST00000366304 PLEKHF1Q96S99 279 aa11.23□□□□□ -0.61
HMGB1P39-201ENST00000366304 SEC31BQ9NQW1 1179 aa11.23□□□□□ -0.61
HMGB1P39-201ENST00000366304 NUDCQ9Y266 331 aa11.23□□□□□ -0.61
HMGB1P39-201ENST00000366304 PTPN22Q9Y2R2 807 aa11.23□□□□□ -0.61
HMGB1P39-201ENST00000366304 UFL1O94874 794 aa11.22□□□□□ -0.61
HMGB1P39-201ENST00000366304 SREBF2Q12772 1141 aa11.22□□□□□ -0.61
HMGB1P39-201ENST00000366304 TTLL12Q14166 644 aaPredicted RBP11.22□□□□□ -0.61
HMGB1P39-201ENST00000366304 KRT24Q2M2I5 525 aa11.22□□□□□ -0.61
HMGB1P39-201ENST00000366304 RTL5Q5HYW3 569 aaPredicted RBP11.22□□□□□ -0.61
HMGB1P39-201ENST00000366304 LDLRAD1Q5T700 205 aa11.22□□□□□ -0.61
HMGB1P39-201ENST00000366304 CD99L2Q8TCZ2 262 aa11.22□□□□□ -0.61
HMGB1P39-201ENST00000366304 DLG5Q8TDM6 1919 aa11.22□□□□□ -0.61
HMGB1P39-201ENST00000366304 EYA3Q99504 573 aa11.22□□□□□ -0.61
HMGB1P39-201ENST00000366304 ZC3H12CQ9C0D7 883 aaKnown RBP11.22□□□□□ -0.61
HMGB1P39-201ENST00000366304 PODXL2Q9NZ53 605 aa11.22□□□□□ -0.61
HMGB1P39-201ENST00000366304 ATP5J2-PTCD1G3V325 749 aa11.21□□□□□ -0.61
HMGB1P39-201ENST00000366304 RPS8P62241 208 aaKnown RBP11.21□□□□□ -0.61
HMGB1P39-201ENST00000366304 CLMNQ96JQ2 1002 aa11.21□□□□□ -0.61
HMGB1P39-201ENST00000366304 ISCA1Q9BUE6 129 aa11.21□□□□□ -0.61
HMGB1P39-201ENST00000366304 COL6A3P12111 3177 aa11.21□□□□□ -0.62
HMGB1P39-201ENST00000366304 SSC5DA1L4H1 1573 aa11.2□□□□□ -0.62
HMGB1P39-201ENST00000366304 WNT10BO00744 389 aa11.2□□□□□ -0.62
HMGB1P39-201ENST00000366304 SASH1O94885 1247 aa11.2□□□□□ -0.62
HMGB1P39-201ENST00000366304 GJA5P36382 358 aa11.2□□□□□ -0.62
HMGB1P39-201ENST00000366304 NFE2L2Q16236 605 aa11.2□□□□□ -0.62
HMGB1P39-201ENST00000366304 HSP90AB3PQ58FF7 597 aa11.2□□□□□ -0.62
HMGB1P39-201ENST00000366304 ZNF646O15015 1829 aaPredicted RBP11.2□□□□□ -0.62
HMGB1P39-201ENST00000366304 CRHR2Q13324 411 aa11.19□□□□□ -0.62
HMGB1P39-201ENST00000366304 ZNF333Q96JL9 665 aa11.19□□□□□ -0.62
HMGB1P39-201ENST00000366304 PTPN18Q99952 460 aa11.19□□□□□ -0.62
HMGB1P39-201ENST00000366304 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.19□□□□□ -0.62
HMGB1P39-201ENST00000366304 RBM27Q9P2N5 1060 aaKnown RBP11.19□□□□□ -0.62
HMGB1P39-201ENST00000366304 TSPYL4Q9UJ04 414 aa11.19□□□□□ -0.62
HMGB1P39-201ENST00000366304 GGA1Q9UJY5 639 aa11.19□□□□□ -0.62
HMGB1P39-201ENST00000366304 PSME4Q14997 1843 aa11.19□□□□□ -0.62
HMGB1P39-201ENST00000366304 CLSPNQ9HAW4 1339 aa11.18□□□□□ -0.62
HMGB1P39-201ENST00000366304 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.18□□□□□ -0.62
HMGB1P39-201ENST00000366304 USP17L3A6NCW0 530 aa11.18□□□□□ -0.62
HMGB1P39-201ENST00000366304 USP17L4A6NCW7 530 aa11.18□□□□□ -0.62
HMGB1P39-201ENST00000366304 IRS4O14654 1257 aaPredicted RBP11.18□□□□□ -0.62
HMGB1P39-201ENST00000366304 PLCG2P16885 1265 aa11.18□□□□□ -0.62
HMGB1P39-201ENST00000366304 IRX5P78411 483 aaPredicted RBP11.18□□□□□ -0.62
HMGB1P39-201ENST00000366304 DACT2Q5SW24 774 aa11.18□□□□□ -0.62
HMGB1P39-201ENST00000366304 USP17L1Q7RTZ2 530 aa11.18□□□□□ -0.62
HMGB1P39-201ENST00000366304 ZFP91Q96JP5 570 aaPredicted RBP11.18□□□□□ -0.62
HMGB1P39-201ENST00000366304 CHPF2Q9P2E5 772 aa11.18□□□□□ -0.62
HMGB1P39-201ENST00000366304 ANKIB1Q9P2G1 1089 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms