RNA–Protein interactions for RNA: ENST00000360642.7

CLCN3-202, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 2 BASIC

Gene CLCN3, Length 3,208 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-202ENST00000360642 PPEF1O14829 653 aaPredicted RBP9.05□□□□□ -0.96
CLCN3-202ENST00000360642 SH3RF1Q7Z6J0 888 aa9.05□□□□□ -0.96
CLCN3-202ENST00000360642 DHX38Q92620 1227 aaKnown RBP9.05□□□□□ -0.96
CLCN3-202ENST00000360642 TRIM50Q86XT4 487 aa9.05□□□□□ -0.96
CLCN3-202ENST00000360642 SLC10A4Q96EP9 437 aa9.05□□□□□ -0.96
CLCN3-202ENST00000360642 DRC1Q96MC2 740 aa9.05□□□□□ -0.96
CLCN3-202ENST00000360642 DUSP9Q99956 384 aaKnown RBP9.05□□□□□ -0.96
CLCN3-202ENST00000360642 ARID5BQ14865 1188 aa9.05□□□□□ -0.96
CLCN3-202ENST00000360642 MAP7D1Q3KQU3 841 aa9.05□□□□□ -0.96
CLCN3-202ENST00000360642 DIP2AQ14689 1571 aa9.04□□□□□ -0.96
CLCN3-202ENST00000360642 KDRP35968 1356 aa9.04□□□□□ -0.96
CLCN3-202ENST00000360642 MAP3K19Q56UN5 1328 aa9.04□□□□□ -0.96
CLCN3-202ENST00000360642 A0A1W2PRU2 124 aa9.04□□□□□ -0.96
CLCN3-202ENST00000360642 GPR182O15218 404 aa9.04□□□□□ -0.96
CLCN3-202ENST00000360642 WEE1P30291 646 aa9.04□□□□□ -0.96
CLCN3-202ENST00000360642 ZC3H6P61129 1189 aaKnown RBP9.04□□□□□ -0.96
CLCN3-202ENST00000360642 MCM10Q7L590 875 aa9.04□□□□□ -0.96
CLCN3-202ENST00000360642 TMEM87AQ8NBN3 555 aa9.04□□□□□ -0.96
CLCN3-202ENST00000360642 CYLDQ9NQC7 956 aa9.04□□□□□ -0.96
CLCN3-202ENST00000360642 FCF1Q9Y324 198 aaKnown RBP9.04□□□□□ -0.96
CLCN3-202ENST00000360642 USP3Q9Y6I4 520 aa9.04□□□□□ -0.96
CLCN3-202ENST00000360642 FMN2Q9NZ56 1722 aa9.04□□□□□ -0.96
CLCN3-202ENST00000360642 KRT24Q2M2I5 525 aa9.04□□□□□ -0.96
CLCN3-202ENST00000360642 RIMS1Q86UR5 1692 aaKnown RBP9.04□□□□□ -0.96
CLCN3-202ENST00000360642 SBNO1A3KN83 1393 aa9.04□□□□□ -0.96
CLCN3-202ENST00000360642 TMEM229AB2RXF0 380 aa9.03□□□□□ -0.96
CLCN3-202ENST00000360642 SNX21Q969T3 373 aa9.03□□□□□ -0.96
CLCN3-202ENST00000360642 DCTPP1Q9H773 170 aa9.03□□□□□ -0.96
CLCN3-202ENST00000360642 PTPRCP08575 1304 aa9.03□□□□□ -0.96
CLCN3-202ENST00000360642 ATP10DQ9P241 1426 aa9.03□□□□□ -0.96
CLCN3-202ENST00000360642 NCOA3Q9Y6Q9 1424 aa9.03□□□□□ -0.96
CLCN3-202ENST00000360642 ST18O60284 1047 aa9.03□□□□□ -0.96
CLCN3-202ENST00000360642 XRN1Q8IZH2 1706 aaKnown RBP9.03□□□□□ -0.96
CLCN3-202ENST00000360642 FLT4P35916 1363 aa9.03□□□□□ -0.96
CLCN3-202ENST00000360642 RGPD8O14715 1765 aaPredicted RBP9.03□□□□□ -0.96
CLCN3-202ENST00000360642 ACBD3Q9H3P7 528 aa9.03□□□□□ -0.96
CLCN3-202ENST00000360642 ZNF358Q9NW07 568 aa9.03□□□□□ -0.96
CLCN3-202ENST00000360642 PARP2Q9UGN5 583 aa9.03□□□□□ -0.96
CLCN3-202ENST00000360642 PIK3C2AO00443 1686 aa9.03□□□□□ -0.96
CLCN3-202ENST00000360642 SOWAHBA6NEL2 793 aa9.02□□□□□ -0.97
CLCN3-202ENST00000360642 MTHFSDQ2M296 383 aaKnown RBP9.02□□□□□ -0.97
CLCN3-202ENST00000360642 KIF2CQ99661 725 aa9.02□□□□□ -0.97
CLCN3-202ENST00000360642 GOLGA8CPA6NN73 597 aa9.02□□□□□ -0.97
CLCN3-202ENST00000360642 DDIT3P35638 169 aa9.02□□□□□ -0.97
CLCN3-202ENST00000360642 RAD51AP2Q09MP3 1159 aa9.02□□□□□ -0.97
CLCN3-202ENST00000360642 ANKRD44Q8N8A2 993 aa9.02□□□□□ -0.97
CLCN3-202ENST00000360642 WNT2BQ93097 391 aa9.02□□□□□ -0.97
CLCN3-202ENST00000360642 OTUD5Q96G74 571 aa9.02□□□□□ -0.97
CLCN3-202ENST00000360642 PARP3Q9Y6F1 533 aa9.02□□□□□ -0.97
CLCN3-202ENST00000360642 IGSF1Q8N6C5 1336 aa9.02□□□□□ -0.97
CLCN3-202ENST00000360642 NR1I2O75469 434 aa9.01□□□□□ -0.97
CLCN3-202ENST00000360642 NGLY1Q96IV0 654 aa9.01□□□□□ -0.97
CLCN3-202ENST00000360642 CEP170BQ9Y4F5 1589 aaPredicted RBP9.01□□□□□ -0.97
CLCN3-202ENST00000360642 USP54Q70EL1 1684 aa9.01□□□□□ -0.97
CLCN3-202ENST00000360642 FOXO3O43524 673 aa9.01□□□□□ -0.97
CLCN3-202ENST00000360642 DNAJA1P31689 397 aaKnown RBP9.01□□□□□ -0.97
CLCN3-202ENST00000360642 RPAP2Q8IXW5 612 aaPredicted RBP9.01□□□□□ -0.97
CLCN3-202ENST00000360642 THEMISQ8N1K5 641 aaPredicted RBP9.01□□□□□ -0.97
CLCN3-202ENST00000360642 ZNF511Q8NB15 262 aa9.01□□□□□ -0.97
CLCN3-202ENST00000360642 ANKK1Q8NFD2 765 aa9.01□□□□□ -0.97
CLCN3-202ENST00000360642 LRFN2Q9ULH4 789 aa9.01□□□□□ -0.97
CLCN3-202ENST00000360642 ANKARQ7Z5J8 1434 aa9.01□□□□□ -0.97
CLCN3-202ENST00000360642 MARF1Q9Y4F3 1742 aaKnown RBP9.01□□□□□ -0.97
CLCN3-202ENST00000360642 F6X3S4 739 aa9.01□□□□□ -0.97
CLCN3-202ENST00000360642 S1PR4O95977 384 aa9.01□□□□□ -0.97
CLCN3-202ENST00000360642 ERCC3P19447 782 aa9.01□□□□□ -0.97
CLCN3-202ENST00000360642 EIF1AXP47813 144 aaKnown RBP9.01□□□□□ -0.97
CLCN3-202ENST00000360642 ZNF394Q53GI3 561 aa9.01□□□□□ -0.97
CLCN3-202ENST00000360642 CHMP5Q9NZZ3 219 aa9.01□□□□□ -0.97
CLCN3-202ENST00000360642 RTL1A6NKG5 1358 aa9□□□□□ -0.97
CLCN3-202ENST00000360642 FER1L4A9Z1Z3 1794 aa9□□□□□ -0.97
CLCN3-202ENST00000360642 GSPT1P15170 499 aaKnown RBP9□□□□□ -0.97
CLCN3-202ENST00000360642 CEP85Q6P2H3 762 aa9□□□□□ -0.97
CLCN3-202ENST00000360642 HSCBQ8IWL3 235 aa9□□□□□ -0.97
CLCN3-202ENST00000360642 NGDNQ8NEJ9 315 aaKnown RBP9□□□□□ -0.97
CLCN3-202ENST00000360642 GTF2F1P35269 517 aaKnown RBP eCLIP9□□□□□ -0.97
CLCN3-202ENST00000360642 ZSCAN29Q8IWY8 852 aaPredicted RBP9□□□□□ -0.97
CLCN3-202ENST00000360642 RGL4Q8IZJ4 473 aa9□□□□□ -0.97
CLCN3-202ENST00000360642 TANGO6Q9C0B7 1094 aa9□□□□□ -0.97
CLCN3-202ENST00000360642 MSH6P52701 1360 aa9□□□□□ -0.97
CLCN3-202ENST00000360642 LRRC37A3O60309 1634 aa9□□□□□ -0.97
CLCN3-202ENST00000360642 HTATSF1O43719 755 aaKnown RBP8.99□□□□□ -0.97
CLCN3-202ENST00000360642 LDHBP07195 334 aaKnown RBP8.99□□□□□ -0.97
CLCN3-202ENST00000360642 BRPF3Q9ULD4 1205 aa8.99□□□□□ -0.97
CLCN3-202ENST00000360642 NWD1Q149M9 1564 aa8.99□□□□□ -0.97
CLCN3-202ENST00000360642 ERVH48-1M5A8F1 160 aa8.99□□□□□ -0.97
CLCN3-202ENST00000360642 MMP16P51512 607 aa8.99□□□□□ -0.97
CLCN3-202ENST00000360642 MRPL58Q14197 206 aaKnown RBP8.99□□□□□ -0.97
CLCN3-202ENST00000360642 CCDC125Q86Z20 511 aa8.99□□□□□ -0.97
CLCN3-202ENST00000360642 C1orf216Q8TAB5 229 aa8.99□□□□□ -0.97
CLCN3-202ENST00000360642 HELQQ8TDG4 1101 aa8.99□□□□□ -0.97
CLCN3-202ENST00000360642 MIS18AQ9NYP9 233 aa8.99□□□□□ -0.97
CLCN3-202ENST00000360642 CDC45O75419 566 aa8.99□□□□□ -0.97
CLCN3-202ENST00000360642 MCM4P33991 863 aa8.99□□□□□ -0.97
CLCN3-202ENST00000360642 SCNN1DP51172 638 aa8.99□□□□□ -0.97
CLCN3-202ENST00000360642 PIK3R5Q8WYR1 880 aa8.99□□□□□ -0.97
CLCN3-202ENST00000360642 DPH6Q7L8W6 267 aa8.98□□□□□ -0.97
CLCN3-202ENST00000360642 LAPTM4BQ86VI4 370 aa8.98□□□□□ -0.97
CLCN3-202ENST00000360642 RTF1Q92541 710 aaKnown RBP8.98□□□□□ -0.97
CLCN3-202ENST00000360642 MEIS3Q99687 375 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 136.6 ms