RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 TBC1D2Q9BYX2 928 aa10.48□□□□□ -0.73
VPS13A-203ENST00000360280 VIMP08670 466 aaKnown RBP10.48□□□□□ -0.73
VPS13A-203ENST00000360280 PTPRCP08575 1304 aa10.48□□□□□ -0.73
VPS13A-203ENST00000360280 TUBB2AQ13885 445 aa10.48□□□□□ -0.73
VPS13A-203ENST00000360280 SRGAP1Q7Z6B7 1085 aa10.48□□□□□ -0.73
VPS13A-203ENST00000360280 TUBB2BQ9BVA1 445 aa10.48□□□□□ -0.73
VPS13A-203ENST00000360280 LRPPRCP42704 1394 aaKnown RBP10.48□□□□□ -0.73
VPS13A-203ENST00000360280 HPDP32754 393 aaPredicted RBP10.48□□□□□ -0.73
VPS13A-203ENST00000360280 PPFIA1Q13136 1202 aa10.48□□□□□ -0.73
VPS13A-203ENST00000360280 I3L4J1 428 aa10.48□□□□□ -0.73
VPS13A-203ENST00000360280 NCOA7Q8NI08 942 aa10.48□□□□□ -0.73
VPS13A-203ENST00000360280 DDX54Q8TDD1 881 aaKnown RBP10.48□□□□□ -0.73
VPS13A-203ENST00000360280 LUC7L3O95232 432 aaKnown RBP10.48□□□□□ -0.73
VPS13A-203ENST00000360280 SYNJ2O15056 1496 aa10.48□□□□□ -0.73
VPS13A-203ENST00000360280 TIAM1Q13009 1591 aa10.48□□□□□ -0.73
VPS13A-203ENST00000360280 MRPS27Q92552 414 aaKnown RBP10.47□□□□□ -0.73
VPS13A-203ENST00000360280 CACYBPQ9HB71 228 aaKnown RBP10.47□□□□□ -0.73
VPS13A-203ENST00000360280 DNAJC8O75937 253 aaPredicted RBP10.47□□□□□ -0.73
VPS13A-203ENST00000360280 HLA-DOAP06340 250 aa10.47□□□□□ -0.73
VPS13A-203ENST00000360280 AOPEPQ8N6M6 819 aa10.47□□□□□ -0.73
VPS13A-203ENST00000360280 SMIM23A6NLE4 172 aa10.47□□□□□ -0.73
VPS13A-203ENST00000360280 UBXN1Q04323 297 aa10.47□□□□□ -0.73
VPS13A-203ENST00000360280 GBP5Q96PP8 586 aa10.47□□□□□ -0.73
VPS13A-203ENST00000360280 RAD54L2Q9Y4B4 1467 aa10.47□□□□□ -0.73
VPS13A-203ENST00000360280 CAPZA3Q96KX2 299 aa10.47□□□□□ -0.73
VPS13A-203ENST00000360280 TMTC2Q8N394 836 aa10.47□□□□□ -0.73
VPS13A-203ENST00000360280 RHOXF2BP0C7M4 288 aa10.47□□□□□ -0.73
VPS13A-203ENST00000360280 BMP2KLQ5H9B9 411 aa10.47□□□□□ -0.73
VPS13A-203ENST00000360280 RHOXF2Q9BQY4 288 aa10.47□□□□□ -0.73
VPS13A-203ENST00000360280 ITSN2Q9NZM3 1697 aa10.47□□□□□ -0.73
VPS13A-203ENST00000360280 GABPB1Q06547 395 aaPredicted RBP10.47□□□□□ -0.73
VPS13A-203ENST00000360280 ZPR1O75312 459 aa10.47□□□□□ -0.73
VPS13A-203ENST00000360280 KIF14Q15058 1648 aa10.47□□□□□ -0.73
VPS13A-203ENST00000360280 GOLGA6CA6NDK9 693 aa10.46□□□□□ -0.73
VPS13A-203ENST00000360280 GOLGA6DP0CG33 693 aa10.46□□□□□ -0.73
VPS13A-203ENST00000360280 MAP2K2P36507 400 aa10.46□□□□□ -0.73
VPS13A-203ENST00000360280 Q9H521 79 aa10.46□□□□□ -0.73
VPS13A-203ENST00000360280 GOLGA6AQ9NYA3 693 aa10.46□□□□□ -0.73
VPS13A-203ENST00000360280 ITIH3Q06033 890 aa10.46□□□□□ -0.73
VPS13A-203ENST00000360280 BAG3O95817 575 aa10.46□□□□□ -0.73
VPS13A-203ENST00000360280 ERCC5P28715 1186 aaPredicted RBP10.46□□□□□ -0.73
VPS13A-203ENST00000360280 BOLA2Q9H3K6 86 aa10.46□□□□□ -0.73
VPS13A-203ENST00000360280 RTEL1-TNFRSF6BF6WH68 1400 aa10.46□□□□□ -0.73
VPS13A-203ENST00000360280 RILPL1Q5EBL4 403 aa10.46□□□□□ -0.73
VPS13A-203ENST00000360280 NFE2L2Q16236 605 aa10.46□□□□□ -0.73
VPS13A-203ENST00000360280 WDR78Q5VTH9 848 aa10.46□□□□□ -0.73
VPS13A-203ENST00000360280 TRIM35Q9UPQ4 493 aa10.46□□□□□ -0.73
VPS13A-203ENST00000360280 NSD3Q9BZ95 1437 aa10.46□□□□□ -0.73
VPS13A-203ENST00000360280 SPATS2Q86XZ4 545 aaKnown RBP10.46□□□□□ -0.74
VPS13A-203ENST00000360280 THEGQ9P2T0 379 aa10.46□□□□□ -0.74
VPS13A-203ENST00000360280 KIAA1107Q9UPP5 1409 aa10.46□□□□□ -0.74
VPS13A-203ENST00000360280 NCBP1Q09161 790 aaKnown RBP10.46□□□□□ -0.74
VPS13A-203ENST00000360280 GIMAP6Q6P9H5 292 aa10.46□□□□□ -0.74
VPS13A-203ENST00000360280 GSDMBQ8TAX9 411 aa10.46□□□□□ -0.74
VPS13A-203ENST00000360280 UBL4BQ8N7F7 174 aa10.46□□□□□ -0.74
VPS13A-203ENST00000360280 KIFAP3Q92845 792 aa10.46□□□□□ -0.74
VPS13A-203ENST00000360280 GTF3C6Q969F1 213 aa10.46□□□□□ -0.74
VPS13A-203ENST00000360280 TMEM110-MUSTN1A8MSY1 372 aa10.46□□□□□ -0.74
VPS13A-203ENST00000360280 HAUS8Q9BT25 410 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 CNNM2Q9H8M5 875 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 RUFY4Q6ZNE9 571 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 CCDC65Q8IXS2 484 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 AGTPBP1Q9UPW5 1226 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 TLDC2A0PJX2 215 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 IFT20Q8IY31 132 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 ATP2A3Q93084 1043 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 MUM1Q2TAK8 710 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 C8orf74Q6P047 294 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 AFMP43652 599 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 ARID5AQ03989 594 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 UAP1Q16222 522 aaPredicted RBP10.45□□□□□ -0.74
VPS13A-203ENST00000360280 KRT23Q9C075 422 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 GDPD2Q9HCC8 539 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 ZNF131P52739 623 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 RBM27Q9P2N5 1060 aaKnown RBP10.45□□□□□ -0.74
VPS13A-203ENST00000360280 CASKIN1Q8WXD9 1431 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 GJC1P36383 396 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 TERF1P54274 439 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 SLC26A6Q9BXS9 759 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 LZTFL1Q9NQ48 299 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 GAPVD1Q14C86 1478 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 STK10O94804 968 aaKnown RBP10.45□□□□□ -0.74
VPS13A-203ENST00000360280 AP1ARQ63HQ0 302 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 ZMAT2Q96NC0 199 aaKnown RBP10.45□□□□□ -0.74
VPS13A-203ENST00000360280 TSPY2A6NKD2 308 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 COG7P83436 770 aa10.45□□□□□ -0.74
VPS13A-203ENST00000360280 CCDC186Q7Z3E2 898 aa10.44□□□□□ -0.74
VPS13A-203ENST00000360280 E7EVH7 732 aa10.44□□□□□ -0.74
VPS13A-203ENST00000360280 TBC1D9Q6ZT07 1266 aa10.44□□□□□ -0.74
VPS13A-203ENST00000360280 PPP2R3AQ06190 1150 aa10.44□□□□□ -0.74
VPS13A-203ENST00000360280 MYCBPQ99417 103 aaPredicted RBP10.44□□□□□ -0.74
VPS13A-203ENST00000360280 MTMR3Q13615 1198 aa10.44□□□□□ -0.74
VPS13A-203ENST00000360280 CUL4BQ13620 913 aa10.44□□□□□ -0.74
VPS13A-203ENST00000360280 PDCD2Q16342 344 aaPredicted RBP10.44□□□□□ -0.74
VPS13A-203ENST00000360280 TMEM132EQ6IEE7 984 aa10.44□□□□□ -0.74
VPS13A-203ENST00000360280 PRAM1Q96QH2 718 aa10.44□□□□□ -0.74
VPS13A-203ENST00000360280 FAN1Q9Y2M0 1017 aa10.44□□□□□ -0.74
VPS13A-203ENST00000360280 USP16Q9Y5T5 823 aa10.44□□□□□ -0.74
VPS13A-203ENST00000360280 FAM13AO94988 1023 aa10.44□□□□□ -0.74
VPS13A-203ENST00000360280 TRIM14Q14142 442 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms