RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 HACL1Q9UJ83 578 aa11.04□□□□□ -0.64
UPF2-202ENST00000357604 TTLL11Q8NHH1 800 aa11.03□□□□□ -0.64
UPF2-202ENST00000357604 PODNQ7Z5L7 613 aa11.03□□□□□ -0.64
UPF2-202ENST00000357604 VEZTQ9HBM0 779 aa11.03□□□□□ -0.64
UPF2-202ENST00000357604 GPBP1L1Q9HC44 474 aaPredicted RBP11.03□□□□□ -0.64
UPF2-202ENST00000357604 ADCY9O60503 1353 aa11.03□□□□□ -0.64
UPF2-202ENST00000357604 TDO2P48775 406 aa11.03□□□□□ -0.64
UPF2-202ENST00000357604 RBM26Q5T8P6 1007 aaKnown RBP11.03□□□□□ -0.64
UPF2-202ENST00000357604 LNPKQ9C0E8 428 aa11.03□□□□□ -0.64
UPF2-202ENST00000357604 IL1RAPL2Q9NP60 686 aa11.03□□□□□ -0.64
UPF2-202ENST00000357604 TNNI3KQ59H18 835 aa11.03□□□□□ -0.64
UPF2-202ENST00000357604 RALYLQ86SE5 291 aaKnown RBP11.03□□□□□ -0.64
UPF2-202ENST00000357604 SULF1Q8IWU6 871 aa11.03□□□□□ -0.64
UPF2-202ENST00000357604 FPGT-TNNI3KV9GXZ4 949 aa11.03□□□□□ -0.64
UPF2-202ENST00000357604 PTF1AQ7RTS3 328 aa11.02□□□□□ -0.64
UPF2-202ENST00000357604 BEGAINQ9BUH8 593 aa11.02□□□□□ -0.64
UPF2-202ENST00000357604 CCDC8Q9H0W5 538 aaPredicted RBP11.02□□□□□ -0.64
UPF2-202ENST00000357604 ZNRF3Q9ULT6 936 aa11.02□□□□□ -0.64
UPF2-202ENST00000357604 CICQ96RK0 1608 aaPredicted RBP11.02□□□□□ -0.65
UPF2-202ENST00000357604 ZBTB7BO15156 539 aaPredicted RBP11.02□□□□□ -0.65
UPF2-202ENST00000357604 ECE2O60344 883 aa11.02□□□□□ -0.65
UPF2-202ENST00000357604 PNMA8AQ86V59 439 aaPredicted RBP11.02□□□□□ -0.65
UPF2-202ENST00000357604 TEKT1Q969V4 418 aa11.02□□□□□ -0.65
UPF2-202ENST00000357604 XAGE2Q96GT9 111 aa11.02□□□□□ -0.65
UPF2-202ENST00000357604 COPRSQ9NQ92 184 aa11.02□□□□□ -0.65
UPF2-202ENST00000357604 LAMB4A4D0S4 1761 aa11.02□□□□□ -0.65
UPF2-202ENST00000357604 NBPF7P0C2Y1 421 aaPredicted RBP11.02□□□□□ -0.65
UPF2-202ENST00000357604 HELBQ8NG08 1087 aaPredicted RBP11.02□□□□□ -0.65
UPF2-202ENST00000357604 F8W031 263 aaPredicted RBP11.01□□□□□ -0.65
UPF2-202ENST00000357604 MAP4K4O95819 1239 aaPredicted RBP11.01□□□□□ -0.65
UPF2-202ENST00000357604 DCAF15Q66K64 600 aa11.01□□□□□ -0.65
UPF2-202ENST00000357604 MAGEB6P1A0A0J9YX57 407 aa11.01□□□□□ -0.65
UPF2-202ENST00000357604 SRGNP10124 158 aa11.01□□□□□ -0.65
UPF2-202ENST00000357604 PSMA5P28066 241 aa11.01□□□□□ -0.65
UPF2-202ENST00000357604 GPSM2P81274 684 aa11.01□□□□□ -0.65
UPF2-202ENST00000357604 ZNF594Q96JF6 807 aaPredicted RBP11.01□□□□□ -0.65
UPF2-202ENST00000357604 USP44Q9H0E7 712 aa11.01□□□□□ -0.65
UPF2-202ENST00000357604 RNF41Q9H4P4 317 aaPredicted RBP11.01□□□□□ -0.65
UPF2-202ENST00000357604 AOX1Q06278 1338 aa11.01□□□□□ -0.65
UPF2-202ENST00000357604 A0A1B0GUL7 405 aa11.01□□□□□ -0.65
UPF2-202ENST00000357604 RAD21O60216 631 aa11.01□□□□□ -0.65
UPF2-202ENST00000357604 CYP7A1P22680 504 aa11.01□□□□□ -0.65
UPF2-202ENST00000357604 SLC4A9Q96Q91 983 aa11.01□□□□□ -0.65
UPF2-202ENST00000357604 TAF5LO75529 589 aa11□□□□□ -0.65
UPF2-202ENST00000357604 TTLL5Q6EMB2 1281 aa11□□□□□ -0.65
UPF2-202ENST00000357604 PDE8BO95263 885 aa11□□□□□ -0.65
UPF2-202ENST00000357604 DOK7Q18PE1 504 aa11□□□□□ -0.65
UPF2-202ENST00000357604 APOBEC3FQ8IUX4 373 aaKnown RBP11□□□□□ -0.65
UPF2-202ENST00000357604 SEC31BQ9NQW1 1179 aa11□□□□□ -0.65
UPF2-202ENST00000357604 GTF2IP78347 998 aa11□□□□□ -0.65
UPF2-202ENST00000357604 AKAP17AQ02040 695 aaKnown RBP11□□□□□ -0.65
UPF2-202ENST00000357604 SPATA5Q8NB90 893 aa11□□□□□ -0.65
UPF2-202ENST00000357604 ZBTB40Q9NUA8 1239 aa11□□□□□ -0.65
UPF2-202ENST00000357604 SUGT1Q9Y2Z0 365 aa11□□□□□ -0.65
UPF2-202ENST00000357604 IGKV5-2P06315 115 aa11□□□□□ -0.65
UPF2-202ENST00000357604 ARMC9Q7Z3E5 817 aa11□□□□□ -0.65
UPF2-202ENST00000357604 PSMD1Q99460 953 aa11□□□□□ -0.65
UPF2-202ENST00000357604 PA2G4Q9UQ80 394 aaKnown RBP11□□□□□ -0.65
UPF2-202ENST00000357604 KIF3AQ9Y496 699 aa11□□□□□ -0.65
UPF2-202ENST00000357604 RTL9Q8NET4 1388 aa10.99□□□□□ -0.65
UPF2-202ENST00000357604 DDR1Q08345 913 aa10.99□□□□□ -0.65
UPF2-202ENST00000357604 C9orf131Q5VYM1 1079 aa10.99□□□□□ -0.65
UPF2-202ENST00000357604 ZNF277Q9NRM2 450 aaPredicted RBP10.99□□□□□ -0.65
UPF2-202ENST00000357604 SYT17Q9BSW7 474 aa10.99□□□□□ -0.65
UPF2-202ENST00000357604 PDE4BQ07343 736 aa10.99□□□□□ -0.65
UPF2-202ENST00000357604 AOC3Q16853 763 aa10.99□□□□□ -0.65
UPF2-202ENST00000357604 SUPT20HL1Q3ZLR7 823 aa10.99□□□□□ -0.65
UPF2-202ENST00000357604 SH2D4AQ9H788 454 aa10.99□□□□□ -0.65
UPF2-202ENST00000357604 PAG1Q9NWQ8 432 aa10.99□□□□□ -0.65
UPF2-202ENST00000357604 MFSD14BQ5SR56 506 aa10.99□□□□□ -0.65
UPF2-202ENST00000357604 ANO2Q9NQ90 1003 aa10.99□□□□□ -0.65
UPF2-202ENST00000357604 GOLIM4O00461 696 aa10.98□□□□□ -0.65
UPF2-202ENST00000357604 MPHOSPH10O00566 681 aaKnown RBP10.98□□□□□ -0.65
UPF2-202ENST00000357604 IMMTQ16891 758 aaKnown RBP10.98□□□□□ -0.65
UPF2-202ENST00000357604 CPLX2Q6PUV4 134 aaKnown RBP10.98□□□□□ -0.65
UPF2-202ENST00000357604 TTC6Q86TZ1 520 aa10.98□□□□□ -0.65
UPF2-202ENST00000357604 SSH3Q8TE77 659 aa10.98□□□□□ -0.65
UPF2-202ENST00000357604 BOLA2Q9H3K6 86 aa10.98□□□□□ -0.65
UPF2-202ENST00000357604 MINPP1Q9UNW1 487 aa10.98□□□□□ -0.65
UPF2-202ENST00000357604 UBN2Q6ZU65 1347 aa10.98□□□□□ -0.65
UPF2-202ENST00000357604 KDM3BQ7LBC6 1761 aa10.98□□□□□ -0.65
UPF2-202ENST00000357604 NFXL1Q6ZNB6 911 aa10.98□□□□□ -0.65
UPF2-202ENST00000357604 PROM2Q8N271 834 aa10.98□□□□□ -0.65
UPF2-202ENST00000357604 UTYO14607 1347 aa10.98□□□□□ -0.65
UPF2-202ENST00000357604 PICK1Q9NRD5 415 aa10.98□□□□□ -0.65
UPF2-202ENST00000357604 HOXA10P31260 410 aaPredicted RBP10.98□□□□□ -0.65
UPF2-202ENST00000357604 DCTPP1Q9H773 170 aa10.98□□□□□ -0.65
UPF2-202ENST00000357604 CSF1RP07333 972 aa10.97□□□□□ -0.65
UPF2-202ENST00000357604 SMIM5Q71RC9 77 aa10.97□□□□□ -0.65
UPF2-202ENST00000357604 MKNK2Q9HBH9 465 aa10.97□□□□□ -0.65
UPF2-202ENST00000357604 TTF2Q9UNY4 1162 aaKnown RBP10.97□□□□□ -0.65
UPF2-202ENST00000357604 YY1P25490 414 aa10.97□□□□□ -0.65
UPF2-202ENST00000357604 ZNF444Q8N0Y2 327 aaPredicted RBP10.97□□□□□ -0.65
UPF2-202ENST00000357604 NAPBQ9H115 298 aa10.97□□□□□ -0.65
UPF2-202ENST00000357604 DBNDD1Q9H9R9 158 aa10.97□□□□□ -0.65
UPF2-202ENST00000357604 AS3MTQ9HBK9 375 aa10.97□□□□□ -0.65
UPF2-202ENST00000357604 OTUD7BQ6GQQ9 843 aa10.97□□□□□ -0.65
UPF2-202ENST00000357604 ABCC12Q96J65 1359 aa10.97□□□□□ -0.65
UPF2-202ENST00000357604 MED23Q9ULK4 1368 aa10.97□□□□□ -0.65
UPF2-202ENST00000357604 ZC3H4Q9UPT8 1303 aaKnown RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms