RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 PPP1R9BQ96SB3 815 aa22.24■■□□□ 1.15
CCDC88B-202ENST00000356786 A0A1B0GVL5 298 aa22.24■■□□□ 1.15
CCDC88B-202ENST00000356786 ZNF500O60304 480 aaPredicted RBP22.24■■□□□ 1.15
CCDC88B-202ENST00000356786 LDHAL6AQ6ZMR3 332 aa22.24■■□□□ 1.15
CCDC88B-202ENST00000356786 ANKRD24Q8TF21 1146 aa22.24■■□□□ 1.15
CCDC88B-202ENST00000356786 SPAG5Q96R06 1193 aa22.24■■□□□ 1.15
CCDC88B-202ENST00000356786 ZBTB3Q9H5J0 574 aa22.24■■□□□ 1.15
CCDC88B-202ENST00000356786 ZNF75DP51815 510 aa22.23■■□□□ 1.15
CCDC88B-202ENST00000356786 MYL5Q02045 173 aa22.23■■□□□ 1.15
CCDC88B-202ENST00000356786 FAM76AQ8TAV0 307 aa22.23■■□□□ 1.15
CCDC88B-202ENST00000356786 DHX58Q96C10 678 aa22.23■■□□□ 1.15
CCDC88B-202ENST00000356786 CCDC114Q96M63 670 aa22.23■■□□□ 1.15
CCDC88B-202ENST00000356786 ZNF444Q8N0Y2 327 aaPredicted RBP22.23■■□□□ 1.15
CCDC88B-202ENST00000356786 BMP15O95972 392 aa22.23■■□□□ 1.15
CCDC88B-202ENST00000356786 CBX8Q9HC52 389 aa22.23■■□□□ 1.15
CCDC88B-202ENST00000356786 IFI16Q16666 785 aaKnown RBP22.23■■□□□ 1.15
CCDC88B-202ENST00000356786 EXOC1Q9NV70 894 aa22.23■■□□□ 1.15
CCDC88B-202ENST00000356786 PSMA7O14818 248 aa22.22■■□□□ 1.15
CCDC88B-202ENST00000356786 FAM160A1Q05DH4 1040 aa22.22■■□□□ 1.15
CCDC88B-202ENST00000356786 CCDC42Q96M95 316 aa22.22■■□□□ 1.15
CCDC88B-202ENST00000356786 PA2G4Q9UQ80 394 aaKnown RBP22.22■■□□□ 1.15
CCDC88B-202ENST00000356786 SLC5A1P13866 664 aa22.22■■□□□ 1.15
CCDC88B-202ENST00000356786 TTF1Q15361 905 aaPredicted RBP22.22■■□□□ 1.15
CCDC88B-202ENST00000356786 KRT24Q2M2I5 525 aa22.22■■□□□ 1.15
CCDC88B-202ENST00000356786 VGLL3A8MV65 326 aa22.22■■□□□ 1.15
CCDC88B-202ENST00000356786 APOBRQ0VD83 1088 aa22.22■■□□□ 1.15
CCDC88B-202ENST00000356786 GAS2L3Q86XJ1 694 aa22.22■■□□□ 1.15
CCDC88B-202ENST00000356786 ARFGAP2Q8N6H7 521 aa22.22■■□□□ 1.15
CCDC88B-202ENST00000356786 CHPF2Q9P2E5 772 aa22.22■■□□□ 1.15
CCDC88B-202ENST00000356786 TTC41PQ6P2S7 1318 aa22.22■■□□□ 1.15
CCDC88B-202ENST00000356786 NBPF7P0C2Y1 421 aaPredicted RBP22.21■■□□□ 1.15
CCDC88B-202ENST00000356786 WWC2Q6AWC2 1192 aa22.21■■□□□ 1.15
CCDC88B-202ENST00000356786 GBP6Q6ZN66 633 aa22.21■■□□□ 1.15
CCDC88B-202ENST00000356786 CHST3Q7LGC8 479 aa22.21■■□□□ 1.15
CCDC88B-202ENST00000356786 ANKRD18BA2A2Z9 1011 aa22.21■■□□□ 1.15
CCDC88B-202ENST00000356786 VAV2P52735 878 aa22.21■■□□□ 1.15
CCDC88B-202ENST00000356786 WTAPQ15007 396 aa22.21■■□□□ 1.15
CCDC88B-202ENST00000356786 EIF2AK4Q9P2K8 1649 aaKnown RBP22.21■■□□□ 1.15
CCDC88B-202ENST00000356786 PHF8Q9UPP1 1060 aa22.21■■□□□ 1.15
CCDC88B-202ENST00000356786 KIF5BP33176 963 aa22.2■■□□□ 1.15
CCDC88B-202ENST00000356786 PIK3C2GO75747 1445 aa22.2■■□□□ 1.14
CCDC88B-202ENST00000356786 NSRP1Q9H0G5 558 aaKnown RBP22.2■■□□□ 1.14
CCDC88B-202ENST00000356786 TRMT112Q9UI30 125 aaKnown RBP22.2■■□□□ 1.14
CCDC88B-202ENST00000356786 UHRF1BP1LA0JNW5 1464 aa22.2■■□□□ 1.14
CCDC88B-202ENST00000356786 STAT6P42226 847 aa22.2■■□□□ 1.14
CCDC88B-202ENST00000356786 CPLX4Q7Z7G2 160 aa22.2■■□□□ 1.14
CCDC88B-202ENST00000356786 SCLT1Q96NL6 688 aa22.2■■□□□ 1.14
CCDC88B-202ENST00000356786 PRC1O43663 620 aa22.19■■□□□ 1.14
CCDC88B-202ENST00000356786 RBM5P52756 815 aaKnown RBP eCLIP22.19■■□□□ 1.14
CCDC88B-202ENST00000356786 CCDC6Q16204 474 aa22.19■■□□□ 1.14
CCDC88B-202ENST00000356786 ANKS4BQ8N8V4 417 aa22.19■■□□□ 1.14
CCDC88B-202ENST00000356786 CETN1Q12798 172 aa22.19■■□□□ 1.14
CCDC88B-202ENST00000356786 BICDL1Q6ZP65 573 aa22.19■■□□□ 1.14
CCDC88B-202ENST00000356786 MMRN2Q9H8L6 949 aa22.19■■□□□ 1.14
CCDC88B-202ENST00000356786 ZFYP08048 801 aaPredicted RBP22.19■■□□□ 1.14
CCDC88B-202ENST00000356786 UHRF1BP1Q6BDS2 1440 aa22.19■■□□□ 1.14
CCDC88B-202ENST00000356786 WDHD1O75717 1129 aaPredicted RBP22.19■■□□□ 1.14
CCDC88B-202ENST00000356786 TRIM75PA6NK02 468 aa22.18■■□□□ 1.14
CCDC88B-202ENST00000356786 DESP17661 470 aa22.18■■□□□ 1.14
CCDC88B-202ENST00000356786 RTN1Q16799 776 aa22.18■■□□□ 1.14
CCDC88B-202ENST00000356786 DHX32Q7L7V1 743 aaKnown RBP22.18■■□□□ 1.14
CCDC88B-202ENST00000356786 SELENOOQ9BVL4 669 aa22.18■■□□□ 1.14
CCDC88B-202ENST00000356786 CLSTN2Q9H4D0 955 aa22.18■■□□□ 1.14
CCDC88B-202ENST00000356786 DZIP1Q86YF9 867 aaKnown RBP22.18■■□□□ 1.14
CCDC88B-202ENST00000356786 NUTM2AQ8IVF1 878 aaPredicted RBP22.18■■□□□ 1.14
CCDC88B-202ENST00000356786 IFT81Q8WYA0 676 aa22.18■■□□□ 1.14
CCDC88B-202ENST00000356786 ATP7AQ04656 1500 aa22.18■■□□□ 1.14
CCDC88B-202ENST00000356786 SOS1Q07889 1333 aaPredicted RBP22.18■■□□□ 1.14
CCDC88B-202ENST00000356786 GRM8O00222 908 aa22.18■■□□□ 1.14
CCDC88B-202ENST00000356786 FOXO3O43524 673 aa22.18■■□□□ 1.14
CCDC88B-202ENST00000356786 CARD14Q9BXL6 1004 aa22.18■■□□□ 1.14
CCDC88B-202ENST00000356786 MPHOSPH10O00566 681 aaKnown RBP22.17■■□□□ 1.14
CCDC88B-202ENST00000356786 LUC7L2Q9Y383 392 aaKnown RBP22.17■■□□□ 1.14
CCDC88B-202ENST00000356786 TSPY2A6NKD2 308 aa22.17■■□□□ 1.14
CCDC88B-202ENST00000356786 CFAP58Q5T655 872 aa22.17■■□□□ 1.14
CCDC88B-202ENST00000356786 CNGA4Q8IV77 575 aa22.17■■□□□ 1.14
CCDC88B-202ENST00000356786 CWC25Q9NXE8 425 aaPredicted RBP22.17■■□□□ 1.14
CCDC88B-202ENST00000356786 ACEP12821 1306 aa22.17■■□□□ 1.14
CCDC88B-202ENST00000356786 C6orf163Q5TEZ5 329 aa22.17■■□□□ 1.14
CCDC88B-202ENST00000356786 ANKRD13DQ6ZTN6 518 aa22.17■■□□□ 1.14
CCDC88B-202ENST00000356786 BRAPQ7Z569 592 aa22.17■■□□□ 1.14
CCDC88B-202ENST00000356786 DMRT2Q9Y5R5 561 aa22.17■■□□□ 1.14
CCDC88B-202ENST00000356786 AKR1B15C9JRZ8 316 aaPredicted RBP22.17■■□□□ 1.14
CCDC88B-202ENST00000356786 CTNNA2P26232 953 aa22.17■■□□□ 1.14
CCDC88B-202ENST00000356786 UBXN1Q04323 297 aa22.17■■□□□ 1.14
CCDC88B-202ENST00000356786 CHMP4BP1P59074 171 aa22.16■■□□□ 1.14
CCDC88B-202ENST00000356786 ALDH1L1O75891 902 aa22.16■■□□□ 1.14
CCDC88B-202ENST00000356786 GPTP24298 496 aa22.16■■□□□ 1.14
CCDC88B-202ENST00000356786 AFAP1L1Q8TED9 768 aa22.16■■□□□ 1.14
CCDC88B-202ENST00000356786 VAT1LQ9HCJ6 419 aa22.16■■□□□ 1.14
CCDC88B-202ENST00000356786 RIMS2Q9UQ26 1411 aa22.16■■□□□ 1.14
CCDC88B-202ENST00000356786 ATL3Q6DD88 541 aa22.16■■□□□ 1.14
CCDC88B-202ENST00000356786 CCDC129Q6ZRS4 1044 aa22.16■■□□□ 1.14
CCDC88B-202ENST00000356786 KIF4AO95239 1232 aa22.16■■□□□ 1.14
CCDC88B-202ENST00000356786 PHACTR3Q96KR7 559 aa22.16■■□□□ 1.14
CCDC88B-202ENST00000356786 A0A1W2PRG0 241 aa22.15■■□□□ 1.14
CCDC88B-202ENST00000356786 DTNBO60941 627 aa22.15■■□□□ 1.14
CCDC88B-202ENST00000356786 CCDC122Q5T0U0 273 aa22.15■■□□□ 1.14
CCDC88B-202ENST00000356786 MAST1Q9Y2H9 1570 aa22.15■■□□□ 1.14
CCDC88B-202ENST00000356786 MEX3CQ5U5Q3 659 aaKnown RBP22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms