RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 COL23A1Q86Y22 540 aaPredicted RBP12.09□□□□□ -0.47
SYNE1-203ENST00000354674 EAF2Q96CJ1 260 aaPredicted RBP12.09□□□□□ -0.47
SYNE1-203ENST00000354674 TERF1P54274 439 aa12.09□□□□□ -0.47
SYNE1-203ENST00000354674 TFCP2Q12800 502 aa12.09□□□□□ -0.47
SYNE1-203ENST00000354674 LRRC24Q50LG9 513 aa12.09□□□□□ -0.47
SYNE1-203ENST00000354674 NBPF5PQ86XG9 351 aaPredicted RBP12.09□□□□□ -0.47
SYNE1-203ENST00000354674 RGS22Q8NE09 1264 aa12.09□□□□□ -0.47
SYNE1-203ENST00000354674 RIPOR2Q9Y4F9 1068 aa12.09□□□□□ -0.47
SYNE1-203ENST00000354674 TTC41PQ6P2S7 1318 aa12.09□□□□□ -0.47
SYNE1-203ENST00000354674 PNPLA7Q6ZV29 1317 aa12.09□□□□□ -0.47
SYNE1-203ENST00000354674 ZNF500O60304 480 aaPredicted RBP12.08□□□□□ -0.48
SYNE1-203ENST00000354674 MYCNP04198 464 aaPredicted RBP12.08□□□□□ -0.48
SYNE1-203ENST00000354674 CCDC152Q4G0S7 254 aa12.08□□□□□ -0.48
SYNE1-203ENST00000354674 CCDC125Q86Z20 511 aa12.08□□□□□ -0.48
SYNE1-203ENST00000354674 PI4K2BQ8TCG2 481 aa12.08□□□□□ -0.48
SYNE1-203ENST00000354674 PUS3Q9BZE2 481 aaKnown RBP12.08□□□□□ -0.48
SYNE1-203ENST00000354674 TNRC6CQ9HCJ0 1690 aaKnown RBP12.08□□□□□ -0.48
SYNE1-203ENST00000354674 CD2BP2O95400 341 aaKnown RBP12.08□□□□□ -0.48
SYNE1-203ENST00000354674 TNNI3KQ59H18 835 aa12.08□□□□□ -0.48
SYNE1-203ENST00000354674 FPGT-TNNI3KV9GXZ4 949 aa12.08□□□□□ -0.48
SYNE1-203ENST00000354674 CSPP1Q1MSJ5 1256 aa12.08□□□□□ -0.48
SYNE1-203ENST00000354674 C3orf67Q6ZVT6 689 aa12.08□□□□□ -0.48
SYNE1-203ENST00000354674 TTC12Q9H892 705 aaPredicted RBP12.08□□□□□ -0.48
SYNE1-203ENST00000354674 COL4A1P02462 1669 aa12.07□□□□□ -0.48
SYNE1-203ENST00000354674 SYCE3A1L190 88 aa12.07□□□□□ -0.48
SYNE1-203ENST00000354674 BAG6P46379 1132 aa12.07□□□□□ -0.48
SYNE1-203ENST00000354674 AACSQ86V21 672 aa12.07□□□□□ -0.48
SYNE1-203ENST00000354674 CCDC85AQ96PX6 553 aaPredicted RBP12.07□□□□□ -0.48
SYNE1-203ENST00000354674 ZNF609O15014 1411 aa12.07□□□□□ -0.48
SYNE1-203ENST00000354674 PRR29P0C7W0 189 aa12.07□□□□□ -0.48
SYNE1-203ENST00000354674 SLC15A2Q16348 729 aa12.07□□□□□ -0.48
SYNE1-203ENST00000354674 POLRMTO00411 1230 aaKnown RBP12.06□□□□□ -0.48
SYNE1-203ENST00000354674 ZSCAN23Q3MJ62 389 aa12.06□□□□□ -0.48
SYNE1-203ENST00000354674 VGLL2Q8N8G2 317 aa12.06□□□□□ -0.48
SYNE1-203ENST00000354674 MYRIPQ8NFW9 859 aa12.06□□□□□ -0.48
SYNE1-203ENST00000354674 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.06□□□□□ -0.48
SYNE1-203ENST00000354674 IFIT2P09913 472 aaKnown RBP12.06□□□□□ -0.48
SYNE1-203ENST00000354674 SDSP20132 328 aa12.06□□□□□ -0.48
SYNE1-203ENST00000354674 KIF3AQ9Y496 699 aa12.06□□□□□ -0.48
SYNE1-203ENST00000354674 GOLGA6L22H0YM25 854 aa12.06□□□□□ -0.48
SYNE1-203ENST00000354674 APPP05067 770 aa12.06□□□□□ -0.48
SYNE1-203ENST00000354674 DDR1Q08345 913 aa12.06□□□□□ -0.48
SYNE1-203ENST00000354674 SF3B2Q13435 895 aaKnown RBP12.06□□□□□ -0.48
SYNE1-203ENST00000354674 NAA30Q147X3 362 aaPredicted RBP12.06□□□□□ -0.48
SYNE1-203ENST00000354674 TSHZ3Q63HK5 1081 aa12.06□□□□□ -0.48
SYNE1-203ENST00000354674 NLGN1Q8N2Q7 840 aa12.06□□□□□ -0.48
SYNE1-203ENST00000354674 SEC31BQ9NQW1 1179 aa12.06□□□□□ -0.48
SYNE1-203ENST00000354674 ECHDC1Q9NTX5 307 aa12.06□□□□□ -0.48
SYNE1-203ENST00000354674 KCNG1Q9UIX4 513 aa12.06□□□□□ -0.48
SYNE1-203ENST00000354674 PRPF40AO75400 957 aaKnown RBP12.05□□□□□ -0.48
SYNE1-203ENST00000354674 PRR5LQ6MZQ0 368 aa12.05□□□□□ -0.48
SYNE1-203ENST00000354674 LDHAL6AQ6ZMR3 332 aa12.05□□□□□ -0.48
SYNE1-203ENST00000354674 TEX2Q8IWB9 1127 aa12.05□□□□□ -0.48
SYNE1-203ENST00000354674 TLR7Q9NYK1 1049 aaKnown RBP12.05□□□□□ -0.48
SYNE1-203ENST00000354674 DBNLQ9UJU6 430 aaKnown RBP12.05□□□□□ -0.48
SYNE1-203ENST00000354674 A0A1B0GUL6 1792 aa12.05□□□□□ -0.48
SYNE1-203ENST00000354674 SERPINB2P05120 415 aa12.05□□□□□ -0.48
SYNE1-203ENST00000354674 CNBD1Q8NA66 436 aa12.05□□□□□ -0.48
SYNE1-203ENST00000354674 NLRP3Q96P20 1036 aa12.05□□□□□ -0.48
SYNE1-203ENST00000354674 ISY1Q9ULR0 285 aaKnown RBP12.05□□□□□ -0.48
SYNE1-203ENST00000354674 ARAP2Q8WZ64 1704 aa12.04□□□□□ -0.48
SYNE1-203ENST00000354674 GLRX3O76003 335 aaKnown RBP12.04□□□□□ -0.48
SYNE1-203ENST00000354674 TNNT3P45378 269 aaPredicted RBP12.04□□□□□ -0.48
SYNE1-203ENST00000354674 KIAA2012Q0VF49 1180 aa12.04□□□□□ -0.48
SYNE1-203ENST00000354674 CCDC8Q9H0W5 538 aaPredicted RBP12.04□□□□□ -0.48
SYNE1-203ENST00000354674 CEP126Q9P2H0 1117 aa12.04□□□□□ -0.48
SYNE1-203ENST00000354674 SPEF2Q9C093 1822 aa12.04□□□□□ -0.48
SYNE1-203ENST00000354674 MROH5Q6ZUA9 1318 aa12.04□□□□□ -0.48
SYNE1-203ENST00000354674 KLRG2A4D1S0 409 aaPredicted RBP12.04□□□□□ -0.48
SYNE1-203ENST00000354674 PKP1Q13835 747 aa12.04□□□□□ -0.48
SYNE1-203ENST00000354674 DEFB132Q7Z7B7 95 aa12.04□□□□□ -0.48
SYNE1-203ENST00000354674 GPATCH3Q96I76 525 aa12.04□□□□□ -0.48
SYNE1-203ENST00000354674 STK32BQ9NY57 414 aa12.04□□□□□ -0.48
SYNE1-203ENST00000354674 ERC2O15083 957 aa12.04□□□□□ -0.48
SYNE1-203ENST00000354674 SKOR2Q2VWA4 1001 aaPredicted RBP12.04□□□□□ -0.48
SYNE1-203ENST00000354674 AKAP2Q9Y2D5 859 aa12.04□□□□□ -0.48
SYNE1-203ENST00000354674 CDC45O75419 566 aa12.03□□□□□ -0.48
SYNE1-203ENST00000354674 CAPN2P17655 700 aa12.03□□□□□ -0.48
SYNE1-203ENST00000354674 CRY2Q49AN0 593 aa12.03□□□□□ -0.48
SYNE1-203ENST00000354674 CDC5LQ99459 802 aaKnown RBP12.03□□□□□ -0.48
SYNE1-203ENST00000354674 ATP5JP18859 108 aa12.03□□□□□ -0.48
SYNE1-203ENST00000354674 TBC1D9Q6ZT07 1266 aa12.03□□□□□ -0.48
SYNE1-203ENST00000354674 PDE8BO95263 885 aa12.02□□□□□ -0.48
SYNE1-203ENST00000354674 CNNM1Q9NRU3 951 aa12.02□□□□□ -0.48
SYNE1-203ENST00000354674 BSDC1Q9NW68 430 aaPredicted RBP12.02□□□□□ -0.48
SYNE1-203ENST00000354674 A0A1B0GUL7 405 aa12.02□□□□□ -0.49
SYNE1-203ENST00000354674 FGFR2P21802 821 aa12.02□□□□□ -0.49
SYNE1-203ENST00000354674 BRD2P25440 801 aaKnown RBP12.02□□□□□ -0.49
SYNE1-203ENST00000354674 IGHMBP2P38935 993 aaKnown RBP12.02□□□□□ -0.49
SYNE1-203ENST00000354674 CNPY4Q8N129 248 aa12.02□□□□□ -0.49
SYNE1-203ENST00000354674 DBNDD2Q9BQY9 259 aa12.02□□□□□ -0.49
SYNE1-203ENST00000354674 ANKRD31Q8N7Z5 1873 aa12.02□□□□□ -0.49
SYNE1-203ENST00000354674 BAG4O95429 457 aaKnown RBP12.02□□□□□ -0.49
SYNE1-203ENST00000354674 TAF1P21675 1872 aa12.02□□□□□ -0.49
SYNE1-203ENST00000354674 TIMM10P62072 90 aa12.02□□□□□ -0.49
SYNE1-203ENST00000354674 ST5P78524 1137 aa12.02□□□□□ -0.49
SYNE1-203ENST00000354674 METTL24Q5JXM2 366 aa12.02□□□□□ -0.49
SYNE1-203ENST00000354674 LOC102724159A0A0B4J2E5 919 aa12.01□□□□□ -0.49
SYNE1-203ENST00000354674 PWP2Q15269 919 aaKnown RBP12.01□□□□□ -0.49
SYNE1-203ENST00000354674 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms