RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 LRRFIP1Q32MZ4 808 aaKnown RBP25.71■■□□□ 1.71
SHMT1-202ENST00000352886 TTLL5Q6EMB2 1281 aa25.71■■□□□ 1.71
SHMT1-202ENST00000352886 NSUN7Q8NE18 718 aaKnown RBP25.71■■□□□ 1.71
SHMT1-202ENST00000352886 NUP62CLQ9H1M0 184 aa25.71■■□□□ 1.71
SHMT1-202ENST00000352886 WASHC4Q2M389 1173 aa25.7■■□□□ 1.7
SHMT1-202ENST00000352886 ADCY5O95622 1261 aa25.69■■□□□ 1.7
SHMT1-202ENST00000352886 PDZRN4Q6ZMN7 1036 aaPredicted RBP25.69■■□□□ 1.7
SHMT1-202ENST00000352886 CHST3Q7LGC8 479 aa25.69■■□□□ 1.7
SHMT1-202ENST00000352886 NLRP10Q86W26 655 aa25.69■■□□□ 1.7
SHMT1-202ENST00000352886 MYH7P12883 1935 aa25.69■■□□□ 1.7
SHMT1-202ENST00000352886 CTDNEP1O95476 244 aa25.69■■□□□ 1.7
SHMT1-202ENST00000352886 CCDC192P0DO97 292 aa25.69■■□□□ 1.7
SHMT1-202ENST00000352886 CDHR2Q9BYE9 1310 aa25.69■■□□□ 1.7
SHMT1-202ENST00000352886 MYH3P11055 1940 aa25.69■■□□□ 1.7
SHMT1-202ENST00000352886 RIC1Q4ADV7 1423 aa25.69■■□□□ 1.7
SHMT1-202ENST00000352886 ZFYP08048 801 aaPredicted RBP25.68■■□□□ 1.7
SHMT1-202ENST00000352886 ZAP70P43403 619 aa25.68■■□□□ 1.7
SHMT1-202ENST00000352886 CCT2P78371 535 aaKnown RBP25.68■■□□□ 1.7
SHMT1-202ENST00000352886 CAMK4Q16566 473 aa25.68■■□□□ 1.7
SHMT1-202ENST00000352886 DNAJC5Q9H3Z4 198 aa25.68■■□□□ 1.7
SHMT1-202ENST00000352886 ZSCAN16Q9H4T2 348 aaPredicted RBP25.68■■□□□ 1.7
SHMT1-202ENST00000352886 NWD2Q9ULI1 1742 aa25.68■■□□□ 1.7
SHMT1-202ENST00000352886 ANKRD36CQ5JPF3 1778 aa25.68■■□□□ 1.7
SHMT1-202ENST00000352886 PTPDC1A2A3K4 754 aa25.68■■□□□ 1.7
SHMT1-202ENST00000352886 KDM4AO75164 1064 aa25.68■■□□□ 1.7
SHMT1-202ENST00000352886 MAP3K11Q16584 847 aa25.68■■□□□ 1.7
SHMT1-202ENST00000352886 SLC4A9Q96Q91 983 aa25.68■■□□□ 1.7
SHMT1-202ENST00000352886 GREM2Q9H772 168 aa25.68■■□□□ 1.7
SHMT1-202ENST00000352886 DACT1Q9NYF0 836 aa25.68■■□□□ 1.7
SHMT1-202ENST00000352886 NAP1L2Q9ULW6 460 aaPredicted RBP25.68■■□□□ 1.7
SHMT1-202ENST00000352886 BCL9O00512 1426 aa25.68■■□□□ 1.7
SHMT1-202ENST00000352886 MYH15Q9Y2K3 1946 aa25.68■■□□□ 1.7
SHMT1-202ENST00000352886 ITGA6P23229 1130 aa25.67■■□□□ 1.7
SHMT1-202ENST00000352886 METTL24Q5JXM2 366 aa25.67■■□□□ 1.7
SHMT1-202ENST00000352886 PI16Q6UXB8 463 aa25.67■■□□□ 1.7
SHMT1-202ENST00000352886 TTLL11Q8NHH1 800 aa25.67■■□□□ 1.7
SHMT1-202ENST00000352886 LRP6O75581 1613 aa25.67■■□□□ 1.7
SHMT1-202ENST00000352886 CYP19A1P11511 503 aaPredicted RBP25.67■■□□□ 1.7
SHMT1-202ENST00000352886 ATP2B3Q16720 1220 aa25.67■■□□□ 1.7
SHMT1-202ENST00000352886 LDHAL6AQ6ZMR3 332 aa25.67■■□□□ 1.7
SHMT1-202ENST00000352886 RIPOR2Q9Y4F9 1068 aa25.67■■□□□ 1.7
SHMT1-202ENST00000352886 FOXP2O15409 715 aa25.66■■□□□ 1.7
SHMT1-202ENST00000352886 HMGN5P82970 282 aaKnown RBP25.66■■□□□ 1.7
SHMT1-202ENST00000352886 HSP90AB3PQ58FF7 597 aa25.66■■□□□ 1.7
SHMT1-202ENST00000352886 NCOA5Q9HCD5 579 aaKnown RBP25.66■■□□□ 1.7
SHMT1-202ENST00000352886 DISP2A7MBM2 1401 aa25.66■■□□□ 1.7
SHMT1-202ENST00000352886 PGBD1Q96JS3 809 aa25.66■■□□□ 1.7
SHMT1-202ENST00000352886 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP25.66■■□□□ 1.74e-6■■■■□ 19.9
SHMT1-202ENST00000352886 FOSBP53539 338 aa25.65■■□□□ 1.7
SHMT1-202ENST00000352886 TNMDQ9H2S6 317 aa25.65■■□□□ 1.7
SHMT1-202ENST00000352886 CTNNA3Q9UI47 895 aa25.65■■□□□ 1.7
SHMT1-202ENST00000352886 ZBTB1Q9Y2K1 713 aa25.65■■□□□ 1.7
SHMT1-202ENST00000352886 NUP98P52948 1817 aa25.65■■□□□ 1.7
SHMT1-202ENST00000352886 PDIA3P30101 505 aaKnown RBP25.65■■□□□ 1.7
SHMT1-202ENST00000352886 CTSWP56202 376 aa25.65■■□□□ 1.7
SHMT1-202ENST00000352886 HAND2P61296 217 aa25.65■■□□□ 1.7
SHMT1-202ENST00000352886 PLCB2Q00722 1185 aa25.65■■□□□ 1.7
SHMT1-202ENST00000352886 MPNDQ8N594 471 aa25.65■■□□□ 1.7
SHMT1-202ENST00000352886 APPBP2Q92624 585 aa25.65■■□□□ 1.7
SHMT1-202ENST00000352886 ABCC12Q96J65 1359 aa25.64■■□□□ 1.7
SHMT1-202ENST00000352886 AKAP11Q9UKA4 1901 aa25.64■■□□□ 1.7
SHMT1-202ENST00000352886 NAA16Q6N069 864 aaPredicted RBP25.64■■□□□ 1.7
SHMT1-202ENST00000352886 BICD2Q8TD16 824 aa25.64■■□□□ 1.7
SHMT1-202ENST00000352886 SYTL4Q96C24 671 aaPredicted RBP25.64■■□□□ 1.7
SHMT1-202ENST00000352886 ZNF274Q96GC6 653 aaPredicted RBP25.64■■□□□ 1.7
SHMT1-202ENST00000352886 PUS7LQ9H0K6 701 aaKnown RBP25.64■■□□□ 1.7
SHMT1-202ENST00000352886 CFAP45Q9UL16 551 aa25.64■■□□□ 1.7
SHMT1-202ENST00000352886 IMMTQ16891 758 aaKnown RBP25.64■■□□□ 1.69
SHMT1-202ENST00000352886 DDX19AQ9NUU7 478 aaKnown RBP25.64■■□□□ 1.69
SHMT1-202ENST00000352886 KIF3AQ9Y496 699 aa25.64■■□□□ 1.69
SHMT1-202ENST00000352886 ANKRD18BA2A2Z9 1011 aa25.63■■□□□ 1.69
SHMT1-202ENST00000352886 CNNM1Q9NRU3 951 aa25.63■■□□□ 1.69
SHMT1-202ENST00000352886 IRS4O14654 1257 aaPredicted RBP25.63■■□□□ 1.69
SHMT1-202ENST00000352886 PPFIA3O75145 1194 aa25.63■■□□□ 1.69
SHMT1-202ENST00000352886 FGAP02671 866 aa25.63■■□□□ 1.69
SHMT1-202ENST00000352886 CKAP2LQ8IYA6 745 aa25.63■■□□□ 1.69
SHMT1-202ENST00000352886 TRMT112Q9UI30 125 aaKnown RBP25.63■■□□□ 1.69
SHMT1-202ENST00000352886 SALL1Q9NSC2 1324 aa25.63■■□□□ 1.69
SHMT1-202ENST00000352886 COL14A1Q05707 1796 aaKnown RBP25.62■■□□□ 1.69
SHMT1-202ENST00000352886 MCAMP43121 646 aa25.62■■□□□ 1.69
SHMT1-202ENST00000352886 TYRO3Q06418 890 aa25.62■■□□□ 1.69
SHMT1-202ENST00000352886 NR1I2O75469 434 aa25.62■■□□□ 1.69
SHMT1-202ENST00000352886 CEBPZQ03701 1054 aaKnown RBP25.62■■□□□ 1.69
SHMT1-202ENST00000352886 PKNOX2Q96KN3 472 aa25.62■■□□□ 1.69
SHMT1-202ENST00000352886 MRVI1Q9Y6F6 885 aa25.62■■□□□ 1.69
SHMT1-202ENST00000352886 KDM4FA0A1W2PPD8 638 aa25.61■■□□□ 1.69
SHMT1-202ENST00000352886 FBXL16Q8N461 479 aa25.61■■□□□ 1.69
SHMT1-202ENST00000352886 CLSTN2Q9H4D0 955 aa25.61■■□□□ 1.69
SHMT1-202ENST00000352886 GPHNQ9NQX3 736 aaPredicted RBP25.61■■□□□ 1.69
SHMT1-202ENST00000352886 AP5Z1O43299 807 aa25.6■■□□□ 1.69
SHMT1-202ENST00000352886 ADD1P35611 737 aaKnown RBP25.6■■□□□ 1.69
SHMT1-202ENST00000352886 FAM200AQ8TCP9 573 aa25.6■■□□□ 1.69
SHMT1-202ENST00000352886 EXOC5O00471 708 aa25.59■■□□□ 1.69
SHMT1-202ENST00000352886 GPAA1O43292 621 aa25.59■■□□□ 1.69
SHMT1-202ENST00000352886 ZNF830Q96NB3 372 aaPredicted RBP25.59■■□□□ 1.69
SHMT1-202ENST00000352886 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.59■■□□□ 1.69
SHMT1-202ENST00000352886 TBC1D2BQ9UPU7 963 aa25.59■■□□□ 1.69
SHMT1-202ENST00000352886 MYO5AQ9Y4I1 1855 aaKnown RBP25.59■■□□□ 1.69
SHMT1-202ENST00000352886 VGLL2Q8N8G2 317 aa25.59■■□□□ 1.69
SHMT1-202ENST00000352886 EVCP57679 992 aa25.58■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms