RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 ITGA6P23229 1130 aa18.26■□□□□ 0.51
UPF3B-202ENST00000345865 RESTQ13127 1097 aa18.26■□□□□ 0.51
UPF3B-202ENST00000345865 UVSSAQ2YD98 709 aa18.26■□□□□ 0.51
UPF3B-202ENST00000345865 HSP90AB3PQ58FF7 597 aa18.26■□□□□ 0.51
UPF3B-202ENST00000345865 NSUN7Q8NE18 718 aaKnown RBP18.26■□□□□ 0.51
UPF3B-202ENST00000345865 LEO1Q8WVC0 666 aaPredicted RBP18.26■□□□□ 0.51
UPF3B-202ENST00000345865 USP25Q9UHP3 1055 aa18.26■□□□□ 0.51
UPF3B-202ENST00000345865 LRP6O75581 1613 aa18.26■□□□□ 0.51
UPF3B-202ENST00000345865 CDHR2Q9BYE9 1310 aa18.26■□□□□ 0.51
UPF3B-202ENST00000345865 ZKSCAN5Q9Y2L8 839 aa18.26■□□□□ 0.51
UPF3B-202ENST00000345865 CCT2P78371 535 aaKnown RBP18.25■□□□□ 0.51
UPF3B-202ENST00000345865 SPATA32Q96LK8 384 aa18.25■□□□□ 0.51
UPF3B-202ENST00000345865 PUS7LQ9H0K6 701 aaKnown RBP18.25■□□□□ 0.51
UPF3B-202ENST00000345865 NCOA5Q9HCD5 579 aaKnown RBP18.25■□□□□ 0.51
UPF3B-202ENST00000345865 AKAP11Q9UKA4 1901 aa18.25■□□□□ 0.51
UPF3B-202ENST00000345865 PPFIA3O75145 1194 aa18.24■□□□□ 0.51
UPF3B-202ENST00000345865 LDHAL6AQ6ZMR3 332 aa18.24■□□□□ 0.51
UPF3B-202ENST00000345865 SCAND2PQ9GZW5 306 aaPredicted RBP18.24■□□□□ 0.51
UPF3B-202ENST00000345865 GPHNQ9NQX3 736 aaPredicted RBP18.24■□□□□ 0.51
UPF3B-202ENST00000345865 NUP98P52948 1817 aa18.24■□□□□ 0.51
UPF3B-202ENST00000345865 WASHC4Q2M389 1173 aa18.24■□□□□ 0.51
UPF3B-202ENST00000345865 SYTL4Q96C24 671 aaPredicted RBP18.24■□□□□ 0.51
UPF3B-202ENST00000345865 PGBD1Q96JS3 809 aa18.24■□□□□ 0.51
UPF3B-202ENST00000345865 CCDC39Q9UFE4 941 aa18.24■□□□□ 0.51
UPF3B-202ENST00000345865 ANKRD36CQ5JPF3 1778 aa18.24■□□□□ 0.51
UPF3B-202ENST00000345865 MCAMP43121 646 aa18.23■□□□□ 0.51
UPF3B-202ENST00000345865 CTSWP56202 376 aa18.23■□□□□ 0.51
UPF3B-202ENST00000345865 HAND2P61296 217 aa18.23■□□□□ 0.51
UPF3B-202ENST00000345865 ATP2B3Q16720 1220 aa18.23■□□□□ 0.51
UPF3B-202ENST00000345865 METTL24Q5JXM2 366 aa18.23■□□□□ 0.51
UPF3B-202ENST00000345865 LLPHQ9BRT6 129 aaKnown RBP18.23■□□□□ 0.51
UPF3B-202ENST00000345865 MYH3P11055 1940 aa18.23■□□□□ 0.51
UPF3B-202ENST00000345865 IRS4O14654 1257 aaPredicted RBP18.23■□□□□ 0.51
UPF3B-202ENST00000345865 ZNF500O60304 480 aaPredicted RBP18.23■□□□□ 0.51
UPF3B-202ENST00000345865 PDIA3P30101 505 aaKnown RBP18.23■□□□□ 0.51
UPF3B-202ENST00000345865 CAMK4Q16566 473 aa18.23■□□□□ 0.51
UPF3B-202ENST00000345865 VGLL2Q8N8G2 317 aa18.23■□□□□ 0.51
UPF3B-202ENST00000345865 TBC1D2BQ9UPU7 963 aa18.23■□□□□ 0.51
UPF3B-202ENST00000345865 UBN2Q6ZU65 1347 aa18.23■□□□□ 0.51
UPF3B-202ENST00000345865 COL14A1Q05707 1796 aaKnown RBP18.23■□□□□ 0.51
UPF3B-202ENST00000345865 PTPDC1A2A3K4 754 aa18.22■□□□□ 0.51
UPF3B-202ENST00000345865 FGAP02671 866 aa18.22■□□□□ 0.51
UPF3B-202ENST00000345865 FOSBP53539 338 aa18.22■□□□□ 0.51
UPF3B-202ENST00000345865 MPNDQ8N594 471 aa18.22■□□□□ 0.51
UPF3B-202ENST00000345865 DACT1Q9NYF0 836 aa18.22■□□□□ 0.51
UPF3B-202ENST00000345865 SALL1Q9NSC2 1324 aa18.22■□□□□ 0.51
UPF3B-202ENST00000345865 MYO5AQ9Y4I1 1855 aaKnown RBP18.22■□□□□ 0.51
UPF3B-202ENST00000345865 MYH7P12883 1935 aa18.22■□□□□ 0.51
UPF3B-202ENST00000345865 H3BQV1 296 aa18.22■□□□□ 0.51
UPF3B-202ENST00000345865 AP5Z1O43299 807 aa18.22■□□□□ 0.51
UPF3B-202ENST00000345865 ADD1P35611 737 aaKnown RBP18.22■□□□□ 0.51
UPF3B-202ENST00000345865 IFFO2Q5TF58 517 aa18.22■□□□□ 0.51
UPF3B-202ENST00000345865 TRMT112Q9UI30 125 aaKnown RBP18.22■□□□□ 0.51
UPF3B-202ENST00000345865 SLIT2O94813 1529 aa18.22■□□□□ 0.51
UPF3B-202ENST00000345865 COL16A1Q07092 1604 aaPredicted RBP18.21■□□□□ 0.51
UPF3B-202ENST00000345865 EXOC5O00471 708 aa18.21■□□□□ 0.51
UPF3B-202ENST00000345865 ADCY5O95622 1261 aa18.21■□□□□ 0.51
UPF3B-202ENST00000345865 ZFYP08048 801 aaPredicted RBP18.21■□□□□ 0.51
UPF3B-202ENST00000345865 OFD1O75665 1012 aa18.21■□□□□ 0.51
UPF3B-202ENST00000345865 APPBP2Q92624 585 aa18.21■□□□□ 0.51
UPF3B-202ENST00000345865 ANKRD18BA2A2Z9 1011 aa18.2■□□□□ 0.5
UPF3B-202ENST00000345865 KDM4AO75164 1064 aa18.2■□□□□ 0.5
UPF3B-202ENST00000345865 NUP62CLQ9H1M0 184 aa18.2■□□□□ 0.5
UPF3B-202ENST00000345865 CNNM1Q9NRU3 951 aa18.2■□□□□ 0.5
UPF3B-202ENST00000345865 NAP1L2Q9ULW6 460 aaPredicted RBP18.2■□□□□ 0.5
UPF3B-202ENST00000345865 NR1I2O75469 434 aa18.2■□□□□ 0.5
UPF3B-202ENST00000345865 DZIP3Q86Y13 1208 aaKnown RBP18.2■□□□□ 0.5
UPF3B-202ENST00000345865 KLHL34Q8N239 644 aa18.2■□□□□ 0.5
UPF3B-202ENST00000345865 ZNF274Q96GC6 653 aaPredicted RBP18.2■□□□□ 0.5
UPF3B-202ENST00000345865 FTOQ9C0B1 505 aaKnown RBP eCLIP18.2■□□□□ 0.5
UPF3B-202ENST00000345865 ZSCAN16Q9H4T2 348 aaPredicted RBP18.2■□□□□ 0.5
UPF3B-202ENST00000345865 MYH15Q9Y2K3 1946 aa18.19■□□□□ 0.5
UPF3B-202ENST00000345865 GPAA1O43292 621 aa18.19■□□□□ 0.5
UPF3B-202ENST00000345865 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.19■□□□□ 0.5
UPF3B-202ENST00000345865 PLCH1Q4KWH8 1693 aa18.19■□□□□ 0.5
UPF3B-202ENST00000345865 FDPSP14324 419 aaKnown RBP18.18■□□□□ 0.5
UPF3B-202ENST00000345865 MAP3K11Q16584 847 aa18.18■□□□□ 0.5
UPF3B-202ENST00000345865 LRRFIP1Q32MZ4 808 aaKnown RBP18.18■□□□□ 0.5
UPF3B-202ENST00000345865 NAA16Q6N069 864 aaPredicted RBP18.18■□□□□ 0.5
UPF3B-202ENST00000345865 CKAP2LQ8IYA6 745 aa18.18■□□□□ 0.5
UPF3B-202ENST00000345865 FBXL16Q8N461 479 aa18.18■□□□□ 0.5
UPF3B-202ENST00000345865 ABCC12Q96J65 1359 aa18.18■□□□□ 0.5
UPF3B-202ENST00000345865 GOLGA6L4A6NEF3 574 aa18.18■□□□□ 0.5
UPF3B-202ENST00000345865 PDE8AO60658 829 aa18.18■□□□□ 0.5
UPF3B-202ENST00000345865 PDE8BO95263 885 aa18.18■□□□□ 0.5
UPF3B-202ENST00000345865 PTMAP06454 111 aaKnown RBP18.18■□□□□ 0.5
UPF3B-202ENST00000345865 CCDC192P0DO97 292 aa18.18■□□□□ 0.5
UPF3B-202ENST00000345865 MCM5P33992 734 aa18.18■□□□□ 0.5
UPF3B-202ENST00000345865 EVCP57679 992 aa18.18■□□□□ 0.5
UPF3B-202ENST00000345865 CEBPZQ03701 1054 aaKnown RBP18.18■□□□□ 0.5
UPF3B-202ENST00000345865 IMMTQ16891 758 aaKnown RBP18.18■□□□□ 0.5
UPF3B-202ENST00000345865 ZNF34Q8IZ26 560 aa18.18■□□□□ 0.5
UPF3B-202ENST00000345865 NKX2-3Q8TAU0 364 aa18.18■□□□□ 0.5
UPF3B-202ENST00000345865 CTNNA3Q9UI47 895 aa18.18■□□□□ 0.5
UPF3B-202ENST00000345865 MRVI1Q9Y6F6 885 aa18.18■□□□□ 0.5
UPF3B-202ENST00000345865 ERVV-1B6SEH8 477 aa18.17■□□□□ 0.5
UPF3B-202ENST00000345865 IL6STP40189 918 aaPredicted RBP18.17■□□□□ 0.5
UPF3B-202ENST00000345865 ANTXR2P58335 489 aa18.17■□□□□ 0.5
UPF3B-202ENST00000345865 HMGN5P82970 282 aaKnown RBP18.17■□□□□ 0.5
UPF3B-202ENST00000345865 GUCY1B3Q02153 619 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 108.3 ms