RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 FBXO3Q9UK99 471 aa20.33■□□□□ 0.84
SHOX-201ENST00000334060 ZNF804BA4D1E1 1349 aa20.33■□□□□ 0.84
SHOX-201ENST00000334060 PHKA1P46020 1223 aa20.32■□□□□ 0.84
SHOX-201ENST00000334060 PUM3Q15397 648 aaKnown RBP20.32■□□□□ 0.84
SHOX-201ENST00000334060 JAG2Q9Y219 1238 aa20.32■□□□□ 0.84
SHOX-201ENST00000334060 XDHP47989 1333 aa20.32■□□□□ 0.84
SHOX-201ENST00000334060 MAP4K4O95819 1239 aaPredicted RBP20.32■□□□□ 0.84
SHOX-201ENST00000334060 CLASRPQ8N2M8 674 aaKnown RBP20.32■□□□□ 0.84
SHOX-201ENST00000334060 MPNDQ8N594 471 aa20.32■□□□□ 0.84
SHOX-201ENST00000334060 EDC3Q96F86 508 aaKnown RBP20.32■□□□□ 0.84
SHOX-201ENST00000334060 C6orf229H3BNL8 230 aa20.31■□□□□ 0.84
SHOX-201ENST00000334060 NFKBIEO00221 500 aa20.31■□□□□ 0.84
SHOX-201ENST00000334060 DPP8Q6V1X1 898 aaPredicted RBP20.31■□□□□ 0.84
SHOX-201ENST00000334060 ZNF277Q9NRM2 450 aaPredicted RBP20.3■□□□□ 0.84
SHOX-201ENST00000334060 COL1A1P02452 1464 aaPredicted RBP20.3■□□□□ 0.84
SHOX-201ENST00000334060 ARAP2Q8WZ64 1704 aa20.3■□□□□ 0.84
SHOX-201ENST00000334060 PODXL2Q9NZ53 605 aa20.3■□□□□ 0.84
SHOX-201ENST00000334060 GGA1Q9UJY5 639 aa20.3■□□□□ 0.84
SHOX-201ENST00000334060 IFIT2P09913 472 aaKnown RBP20.29■□□□□ 0.84
SHOX-201ENST00000334060 KCNJ4P48050 445 aa20.29■□□□□ 0.84
SHOX-201ENST00000334060 LPIN2Q92539 896 aa20.29■□□□□ 0.84
SHOX-201ENST00000334060 FAM84BQ96KN1 310 aaPredicted RBP20.29■□□□□ 0.84
SHOX-201ENST00000334060 KCNQ5Q9NR82 932 aa20.29■□□□□ 0.84
SHOX-201ENST00000334060 SNRKQ9NRH2 765 aa20.29■□□□□ 0.84
SHOX-201ENST00000334060 CHGBP05060 677 aa20.28■□□□□ 0.84
SHOX-201ENST00000334060 PDE1AP54750 535 aa20.28■□□□□ 0.84
SHOX-201ENST00000334060 AOC3Q16853 763 aa20.28■□□□□ 0.84
SHOX-201ENST00000334060 DOK7Q18PE1 504 aa20.28■□□□□ 0.84
SHOX-201ENST00000334060 PI4K2BQ8TCG2 481 aa20.28■□□□□ 0.84
SHOX-201ENST00000334060 ANKRD2Q9GZV1 360 aa20.28■□□□□ 0.84
SHOX-201ENST00000334060 GSPT1P15170 499 aaKnown RBP20.28■□□□□ 0.84
SHOX-201ENST00000334060 MX1P20591 662 aa20.28■□□□□ 0.84
SHOX-201ENST00000334060 CCDC102BQ68D86 513 aa20.28■□□□□ 0.84
SHOX-201ENST00000334060 UBE4AQ14139 1066 aa20.27■□□□□ 0.84
SHOX-201ENST00000334060 GPR108Q9NPR9 543 aa20.27■□□□□ 0.84
SHOX-201ENST00000334060 CCDC93Q567U6 631 aa20.26■□□□□ 0.83
SHOX-201ENST00000334060 BOLA2Q9H3K6 86 aa20.26■□□□□ 0.83
SHOX-201ENST00000334060 FER1L6Q2WGJ9 1857 aa20.26■□□□□ 0.83
SHOX-201ENST00000334060 CHD4Q14839 1912 aa20.26■□□□□ 0.83
SHOX-201ENST00000334060 SLC5A1P13866 664 aa20.26■□□□□ 0.83
SHOX-201ENST00000334060 DBNDD1Q9H9R9 158 aa20.26■□□□□ 0.83
SHOX-201ENST00000334060 ARFGEF1Q9Y6D6 1849 aa20.26■□□□□ 0.83
SHOX-201ENST00000334060 MCAMP43121 646 aa20.25■□□□□ 0.83
SHOX-201ENST00000334060 TMC4Q7Z404 712 aa20.25■□□□□ 0.83
SHOX-201ENST00000334060 ANTXR1Q9H6X2 564 aa20.25■□□□□ 0.83
SHOX-201ENST00000334060 AKAP2Q9Y2D5 859 aa20.25■□□□□ 0.83
SHOX-201ENST00000334060 ATP2B4P23634 1241 aa20.25■□□□□ 0.83
SHOX-201ENST00000334060 SLFNL1Q499Z3 407 aa20.25■□□□□ 0.83
SHOX-201ENST00000334060 LEMD3Q9Y2U8 911 aa20.25■□□□□ 0.83
SHOX-201ENST00000334060 IFIT1P09914 478 aaKnown RBP20.24■□□□□ 0.83
SHOX-201ENST00000334060 RASGRF1Q13972 1273 aa20.24■□□□□ 0.83
SHOX-201ENST00000334060 MXD3Q9BW11 206 aa20.24■□□□□ 0.83
SHOX-201ENST00000334060 RTFDC1Q9BY42 306 aaPredicted RBP20.24■□□□□ 0.83
SHOX-201ENST00000334060 WASHC4Q2M389 1173 aa20.23■□□□□ 0.83
SHOX-201ENST00000334060 FBXO33Q7Z6M2 555 aa20.23■□□□□ 0.83
SHOX-201ENST00000334060 ZBTB47Q9UFB7 747 aaPredicted RBP20.23■□□□□ 0.83
SHOX-201ENST00000334060 TBC1D9Q6ZT07 1266 aa20.23■□□□□ 0.83
SHOX-201ENST00000334060 ECHDC1Q9NTX5 307 aa20.23■□□□□ 0.83
SHOX-201ENST00000334060 SCN9AQ15858 1988 aa20.23■□□□□ 0.83
SHOX-201ENST00000334060 AKAP11Q9UKA4 1901 aa20.22■□□□□ 0.83
SHOX-201ENST00000334060 YDJCA8MPS7 323 aa20.22■□□□□ 0.83
SHOX-201ENST00000334060 GRIK5Q16478 980 aa20.22■□□□□ 0.83
SHOX-201ENST00000334060 GORABQ5T7V8 394 aa20.22■□□□□ 0.83
SHOX-201ENST00000334060 ARHGAP27Q6ZUM4 889 aa20.22■□□□□ 0.83
SHOX-201ENST00000334060 STAP2Q9UGK3 403 aa20.22■□□□□ 0.83
SHOX-201ENST00000334060 MED23Q9ULK4 1368 aa20.22■□□□□ 0.83
SHOX-201ENST00000334060 ZAP70P43403 619 aa20.21■□□□□ 0.83
SHOX-201ENST00000334060 FKBP4Q02790 459 aaKnown RBP eCLIP20.21■□□□□ 0.83
SHOX-201ENST00000334060 TTC39AQ5SRH9 613 aa20.21■□□□□ 0.83
SHOX-201ENST00000334060 DNAJC2Q99543 621 aaKnown RBP20.21■□□□□ 0.83
SHOX-201ENST00000334060 HMG20BQ9P0W2 317 aa20.21■□□□□ 0.83
SHOX-201ENST00000334060 PPIP5K2O43314 1243 aa20.21■□□□□ 0.83
SHOX-201ENST00000334060 CD209Q9NNX6 404 aa20.21■□□□□ 0.83
SHOX-201ENST00000334060 MYO5AQ9Y4I1 1855 aaKnown RBP20.2■□□□□ 0.82
SHOX-201ENST00000334060 HIBADHP31937 336 aaKnown RBP20.2■□□□□ 0.82
SHOX-201ENST00000334060 TAOK3Q9H2K8 898 aa20.2■□□□□ 0.82
SHOX-201ENST00000334060 CHAF1AQ13111 956 aaPredicted RBP20.19■□□□□ 0.82
SHOX-201ENST00000334060 TTC22Q5TAA0 569 aa20.19■□□□□ 0.82
SHOX-201ENST00000334060 RTKN2Q8IZC4 609 aa20.19■□□□□ 0.82
SHOX-201ENST00000334060 PSMD1Q99460 953 aa20.19■□□□□ 0.82
SHOX-201ENST00000334060 ARID4AP29374 1257 aaPredicted RBP20.19■□□□□ 0.82
SHOX-201ENST00000334060 KIAA2012Q0VF49 1180 aa20.19■□□□□ 0.82
SHOX-201ENST00000334060 ZC3H12CQ9C0D7 883 aaKnown RBP20.19■□□□□ 0.82
SHOX-201ENST00000334060 TMX4Q9H1E5 349 aaPredicted RBP20.19■□□□□ 0.82
SHOX-201ENST00000334060 ATP5JP18859 108 aa20.18■□□□□ 0.82
SHOX-201ENST00000334060 GPR162Q16538 588 aa20.18■□□□□ 0.82
SHOX-201ENST00000334060 VPS37DQ86XT2 251 aa20.18■□□□□ 0.82
SHOX-201ENST00000334060 OSBPL3Q9H4L5 887 aa20.18■□□□□ 0.82
SHOX-201ENST00000334060 CCDC88AQ3V6T2 1871 aa20.18■□□□□ 0.82
SHOX-201ENST00000334060 ECE2O60344 883 aa20.17■□□□□ 0.82
SHOX-201ENST00000334060 CYP2E1P05181 493 aaPredicted RBP20.17■□□□□ 0.82
SHOX-201ENST00000334060 C15orf52Q6ZUT6 534 aaKnown RBP20.17■□□□□ 0.82
SHOX-201ENST00000334060 PIH1D3Q9NQM4 214 aaKnown RBP20.17■□□□□ 0.82
SHOX-201ENST00000334060 GOLIM4O00461 696 aa20.17■□□□□ 0.82
SHOX-201ENST00000334060 CAVIN4Q5BKX8 364 aa20.17■□□□□ 0.82
SHOX-201ENST00000334060 CCDC158Q5M9N0 1113 aa20.17■□□□□ 0.82
SHOX-201ENST00000334060 CC2D2BQ6DHV5 1058 aa20.17■□□□□ 0.82
SHOX-201ENST00000334060 TDRD7Q8NHU6 1098 aaKnown RBP20.17■□□□□ 0.82
SHOX-201ENST00000334060 ZNF646O15015 1829 aaPredicted RBP20.16■□□□□ 0.82
SHOX-201ENST00000334060 IARSP41252 1262 aaKnown RBP20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms