RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 IQGAP1P46940 1657 aa16.99■□□□□ 0.31
TCOF1-201ENST00000323668 QRICH2Q9H0J4 1663 aa16.99■□□□□ 0.31
TCOF1-201ENST00000323668 SLC5A1P13866 664 aa16.99■□□□□ 0.31
TCOF1-201ENST00000323668 EDC3Q96F86 508 aaKnown RBP16.99■□□□□ 0.31
TCOF1-201ENST00000323668 GBP3Q9H0R5 595 aa16.99■□□□□ 0.31
TCOF1-201ENST00000323668 ATP5JP18859 108 aa16.99■□□□□ 0.31
TCOF1-201ENST00000323668 MAP4K1Q92918 833 aa16.99■□□□□ 0.31
TCOF1-201ENST00000323668 DCAF5Q96JK2 942 aa16.99■□□□□ 0.31
TCOF1-201ENST00000323668 NAA16Q6N069 864 aaPredicted RBP16.98■□□□□ 0.31
TCOF1-201ENST00000323668 TEX13AQ9BXU3 409 aaPredicted RBP16.98■□□□□ 0.31
TCOF1-201ENST00000323668 NCOA5Q9HCD5 579 aaKnown RBP16.98■□□□□ 0.31
TCOF1-201ENST00000323668 SLC9C2Q5TAH2 1124 aa16.98■□□□□ 0.31
TCOF1-201ENST00000323668 MFSD6Q6ZSS7 791 aa16.98■□□□□ 0.31
TCOF1-201ENST00000323668 GTF3C6Q969F1 213 aa16.98■□□□□ 0.31
TCOF1-201ENST00000323668 OGFRQ9NZT2 677 aa16.98■□□□□ 0.31
TCOF1-201ENST00000323668 TULP4Q9NRJ4 1543 aa16.98■□□□□ 0.31
TCOF1-201ENST00000323668 AXDND1Q5T1B0 1012 aaPredicted RBP16.98■□□□□ 0.31
TCOF1-201ENST00000323668 JAKMIP3Q5VZ66 844 aa16.98■□□□□ 0.31
TCOF1-201ENST00000323668 CCDC102AQ96A19 550 aa16.98■□□□□ 0.31
TCOF1-201ENST00000323668 PDLIM2Q96JY6 352 aa16.98■□□□□ 0.31
TCOF1-201ENST00000323668 TMX1Q9H3N1 280 aa16.98■□□□□ 0.31
TCOF1-201ENST00000323668 NDUFB9Q9Y6M9 179 aa16.98■□□□□ 0.31
TCOF1-201ENST00000323668 CDK5RAP3Q96JB5 506 aa16.98■□□□□ 0.31
TCOF1-201ENST00000323668 CALCOCO1Q9P1Z2 691 aa16.98■□□□□ 0.31
TCOF1-201ENST00000323668 CYP2E1P05181 493 aaPredicted RBP16.97■□□□□ 0.31
TCOF1-201ENST00000323668 IQCA1Q86XH1 822 aa16.97■□□□□ 0.31
TCOF1-201ENST00000323668 BCL2L12Q9HB09 334 aa16.97■□□□□ 0.31
TCOF1-201ENST00000323668 LRRC7Q96NW7 1537 aa16.97■□□□□ 0.31
TCOF1-201ENST00000323668 USP6P35125 1406 aa16.97■□□□□ 0.31
TCOF1-201ENST00000323668 EIF5P55010 431 aaKnown RBP16.97■□□□□ 0.31
TCOF1-201ENST00000323668 CEP89Q96ST8 783 aa16.97■□□□□ 0.31
TCOF1-201ENST00000323668 HSP90AA4PQ58FG1 418 aa16.96■□□□□ 0.31
TCOF1-201ENST00000323668 UQCRFS1P1P0C7P4 283 aa16.96■□□□□ 0.31
TCOF1-201ENST00000323668 NR1I2O75469 434 aa16.96■□□□□ 0.31
TCOF1-201ENST00000323668 SYT10Q6XYQ8 523 aa16.96■□□□□ 0.31
TCOF1-201ENST00000323668 CTCFLQ8NI51 663 aaPredicted RBP16.96■□□□□ 0.31
TCOF1-201ENST00000323668 SRRTQ9BXP5 876 aaKnown RBP16.96■□□□□ 0.31
TCOF1-201ENST00000323668 DEF6Q9H4E7 631 aa16.96■□□□□ 0.31
TCOF1-201ENST00000323668 RANBP6O60518 1105 aaKnown RBP16.96■□□□□ 0.31
TCOF1-201ENST00000323668 EYA2O00167 538 aa16.95■□□□□ 0.3
TCOF1-201ENST00000323668 ROBO2Q9HCK4 1378 aa16.95■□□□□ 0.3
TCOF1-201ENST00000323668 IGSF3O75054 1194 aa16.95■□□□□ 0.3
TCOF1-201ENST00000323668 EPS15P42566 896 aa16.95■□□□□ 0.3
TCOF1-201ENST00000323668 PI4K2BQ8TCG2 481 aa16.95■□□□□ 0.3
TCOF1-201ENST00000323668 KDRP35968 1356 aa16.95■□□□□ 0.3
TCOF1-201ENST00000323668 KIAA1328Q86T90 577 aa16.95■□□□□ 0.3
TCOF1-201ENST00000323668 CCDC148Q8NFR7 591 aa16.95■□□□□ 0.3
TCOF1-201ENST00000323668 PLBD2Q8NHP8 589 aa16.95■□□□□ 0.3
TCOF1-201ENST00000323668 CCDC12Q8WUD4 166 aaPredicted RBP16.95■□□□□ 0.3
TCOF1-201ENST00000323668 ERO1AQ96HE7 468 aa16.95■□□□□ 0.3
TCOF1-201ENST00000323668 A0A1B0GUL7 405 aa16.95■□□□□ 0.3
TCOF1-201ENST00000323668 NEURL1BA8MQ27 555 aa16.95■□□□□ 0.3
TCOF1-201ENST00000323668 U2AF2P26368 475 aaKnown RBP eCLIP16.95■□□□□ 0.3
TCOF1-201ENST00000323668 DDIT3P35638 169 aa16.95■□□□□ 0.3
TCOF1-201ENST00000323668 POLA2Q14181 598 aa16.95■□□□□ 0.3
TCOF1-201ENST00000323668 ZCRB1Q8TBF4 217 aaKnown RBP16.95■□□□□ 0.3
TCOF1-201ENST00000323668 LMTK2Q8IWU2 1503 aa16.94■□□□□ 0.3
TCOF1-201ENST00000323668 CEP152O94986 1710 aa16.94■□□□□ 0.3
TCOF1-201ENST00000323668 LRMPQ12912 555 aa16.94■□□□□ 0.3
TCOF1-201ENST00000323668 WTAPQ15007 396 aa16.94■□□□□ 0.3
TCOF1-201ENST00000323668 CATIPQ7Z7H3 387 aa16.94■□□□□ 0.3
TCOF1-201ENST00000323668 TMEM87AQ8NBN3 555 aa16.94■□□□□ 0.3
TCOF1-201ENST00000323668 ELP1O95163 1332 aa16.93■□□□□ 0.3
TCOF1-201ENST00000323668 NUP88Q99567 741 aaPredicted RBP16.93■□□□□ 0.3
TCOF1-201ENST00000323668 TMTC2Q8N394 836 aa16.93■□□□□ 0.3
TCOF1-201ENST00000323668 ZNF496Q96IT1 587 aaPredicted RBP16.93■□□□□ 0.3
TCOF1-201ENST00000323668 KRT23Q9C075 422 aa16.93■□□□□ 0.3
TCOF1-201ENST00000323668 ZSWIM4Q9H7M6 989 aa16.93■□□□□ 0.3
TCOF1-201ENST00000323668 MYL5Q02045 173 aa16.93■□□□□ 0.3
TCOF1-201ENST00000323668 SKIDA1Q1XH10 827 aa16.93■□□□□ 0.3
TCOF1-201ENST00000323668 OTUD7BQ6GQQ9 843 aa16.93■□□□□ 0.3
TCOF1-201ENST00000323668 CNNM2Q9H8M5 875 aa16.93■□□□□ 0.3
TCOF1-201ENST00000323668 SLC52A2Q9HAB3 445 aa16.93■□□□□ 0.3
TCOF1-201ENST00000323668 PYCARDQ9ULZ3 195 aa16.93■□□□□ 0.3
TCOF1-201ENST00000323668 GTF2F1P35269 517 aaKnown RBP eCLIP16.93■□□□□ 0.3
TCOF1-201ENST00000323668 SOGA3Q5TF21 947 aa16.93■□□□□ 0.3
TCOF1-201ENST00000323668 CCDC181Q5TID7 509 aa16.93■□□□□ 0.3
TCOF1-201ENST00000323668 ANO1Q5XXA6 986 aa16.92■□□□□ 0.3
TCOF1-201ENST00000323668 IQCEQ6IPM2 695 aa16.92■□□□□ 0.3
TCOF1-201ENST00000323668 ARFGAP3Q9NP61 516 aa16.92■□□□□ 0.3
TCOF1-201ENST00000323668 KIAA1210Q9ULL0 1709 aa16.92■□□□□ 0.3
TCOF1-201ENST00000323668 RTN1Q16799 776 aa16.92■□□□□ 0.3
TCOF1-201ENST00000323668 KLHL34Q8N239 644 aa16.92■□□□□ 0.3
TCOF1-201ENST00000323668 TAF5LO75529 589 aa16.92■□□□□ 0.3
TCOF1-201ENST00000323668 LARGE1O95461 756 aa16.92■□□□□ 0.3
TCOF1-201ENST00000323668 LUC7LQ9NQ29 371 aaKnown RBP16.92■□□□□ 0.3
TCOF1-201ENST00000323668 CAVIN4Q5BKX8 364 aa16.91■□□□□ 0.3
TCOF1-201ENST00000323668 KIAA1524Q8TCG1 905 aa16.91■□□□□ 0.3
TCOF1-201ENST00000323668 MRVI1Q9Y6F6 885 aa16.91■□□□□ 0.3
TCOF1-201ENST00000323668 POTEB2H3BUK9 544 aa16.91■□□□□ 0.3
TCOF1-201ENST00000323668 YEATS4O95619 227 aa16.91■□□□□ 0.3
TCOF1-201ENST00000323668 NLRP5P59047 1200 aa16.91■□□□□ 0.3
TCOF1-201ENST00000323668 DSCC1Q9BVC3 393 aa16.91■□□□□ 0.3
TCOF1-201ENST00000323668 USP28Q96RU2 1077 aa16.91■□□□□ 0.3
TCOF1-201ENST00000323668 IMPACTQ9P2X3 320 aa16.91■□□□□ 0.3
TCOF1-201ENST00000323668 N4BP3O15049 544 aa16.9■□□□□ 0.3
TCOF1-201ENST00000323668 SEC62Q99442 399 aaKnown RBP16.9■□□□□ 0.3
TCOF1-201ENST00000323668 NCOA3Q9Y6Q9 1424 aa16.9■□□□□ 0.3
TCOF1-201ENST00000323668 PROSER3Q2NL68 480 aa16.9■□□□□ 0.3
TCOF1-201ENST00000323668 UTP14AQ9BVJ6 771 aaKnown RBP16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms