RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 PARP3Q9Y6F1 533 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 REC8O95072 547 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 SLC12A2P55011 1212 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 PSMC1P62191 440 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 CCDC14Q49A88 953 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 METTL24Q5JXM2 366 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 HAUS8Q9BT25 410 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 TLDC2A0PJX2 215 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 FAM13AO94988 1023 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 FOSL1P15407 271 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 ADCK1Q86TW2 530 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 MAP7D3Q8IWC1 876 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 NUP88Q99567 741 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 MIS18AQ9NYP9 233 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 BAIAP2L1Q9UHR4 511 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 EIF4G1Q04637 1599 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 PEX14O75381 377 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 CEP78Q5JTW2 689 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 RFWD2Q8NHY2 731 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 ASCC2Q9H1I8 757 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 KIF7Q2M1P5 1343 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 RIOK3O14730 519 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 PDE6BP35913 854 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 WASHC5Q12768 1159 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 RASA3Q14644 834 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 KRT13P13646 458 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 PHBP35232 272 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 CCDC57Q2TAC2 916 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 NOP9Q86U38 636 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 JMYQ8N9B5 988 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 KIF2CQ99661 725 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 TRAF5O00463 557 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 TPD52L2O43399 206 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 STXBP4Q6ZWJ1 553 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 VPS36Q86VN1 386 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 SH2D4AQ9H788 454 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 MYO1BO43795 1136 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 SLC12A1Q13621 1099 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 SUZ12Q15022 739 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 CAMK4Q16566 473 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 CIZ1Q9ULV3 898 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 FAM169AQ9Y6X4 670 aa8.6□□□□□ -1.03
LIMCH1-201ENST00000313860 LRRD1A4D1F6 860 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 KLHL18O94889 574 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 ATF7IPQ6VMQ6 1270 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 TXNDC16Q9P2K2 825 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 RIPOR2Q9Y4F9 1068 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 TMEM191CA6NGB0 347 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 POTECB2RU33 542 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 TMEM191BP0C7N4 346 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 INPP5BP32019 993 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 HAND2P61296 217 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 TMEM259Q4ZIN3 620 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 STAG1Q8WVM7 1258 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 SYNCQ9H7C4 482 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 UTP6Q9NYH9 597 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 DYNC1I2Q13409 638 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 CCDC25Q86WR0 208 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 KRT82Q9NSB4 513 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 PNMA2Q9UL42 364 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 DAPK3O43293 454 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 CREB3O43889 395 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 TRPA1O75762 1119 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 EIF2S3P41091 472 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 TRAF1Q13077 416 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 SAFB2Q14151 953 aaKnown RBP eCLIP8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 ZC3H12BQ5HYM0 836 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 LTV1Q96GA3 475 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 DRC3Q9H069 523 aa8.59□□□□□ -1.03
LIMCH1-201ENST00000313860 KRT3P12035 628 aa8.59□□□□□ -1.04
LIMCH1-201ENST00000313860 TMTC4Q5T4D3 741 aa8.59□□□□□ -1.04
LIMCH1-201ENST00000313860 ZBED2Q9BTP6 218 aa8.59□□□□□ -1.04
LIMCH1-201ENST00000313860 TMEM110-MUSTN1A8MSY1 372 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 CNGA1P29973 690 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 NOP14P78316 857 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 KRT17Q04695 432 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 CCDC150Q8NCX0 1101 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 UBE2OQ9C0C9 1292 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 G3BP2Q9UN86 482 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 ATP8A1Q9Y2Q0 1164 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 SPAG9O60271 1321 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 HCLS1P14317 486 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 ISM2Q6H9L7 571 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 TRAF7Q6Q0C0 670 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 NDE1Q9NXR1 346 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 DSEQ9UL01 958 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 ATP2A1O14983 1001 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 MTRF1O75570 445 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 KRT8P05787 483 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 DMPKQ09013 629 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 FYB2Q5VWT5 728 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 CCDC62Q6P9F0 684 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 CCDC138Q96M89 665 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 CCDC77Q9BR77 488 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 HDAC9Q9UKV0 1011 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 TSPAN9O75954 239 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 S100A9P06702 114 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 CAPN1P07384 714 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms