RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 MARCKSP29966 332 aaPredicted RBP17.11■□□□□ 0.33
PTPN9-201ENST00000306726 BRPF1P55201 1214 aaPredicted RBP17.11■□□□□ 0.33
PTPN9-201ENST00000306726 RNMTO43148 476 aaKnown RBP17.11■□□□□ 0.33
PTPN9-201ENST00000306726 LMOD1P29536 600 aaPredicted RBP17.11■□□□□ 0.33
PTPN9-201ENST00000306726 STK38Q15208 465 aa17.11■□□□□ 0.33
PTPN9-201ENST00000306726 PI4K2BQ8TCG2 481 aa17.11■□□□□ 0.33
PTPN9-201ENST00000306726 USP27XA6NNY8 438 aa17.1■□□□□ 0.33
PTPN9-201ENST00000306726 SLC27A2O14975 620 aa17.1■□□□□ 0.33
PTPN9-201ENST00000306726 PDCP20941 246 aa17.1■□□□□ 0.33
PTPN9-201ENST00000306726 TIMM10P62072 90 aa17.1■□□□□ 0.33
PTPN9-201ENST00000306726 TAF7LQ5H9L4 462 aa17.1■□□□□ 0.33
PTPN9-201ENST00000306726 PRIMPOLQ96LW4 560 aa17.1■□□□□ 0.33
PTPN9-201ENST00000306726 CEP135Q66GS9 1140 aa17.1■□□□□ 0.33
PTPN9-201ENST00000306726 TMC6Q7Z403 805 aa17.1■□□□□ 0.33
PTPN9-201ENST00000306726 CACTINQ8WUQ7 758 aaKnown RBP17.1■□□□□ 0.33
PTPN9-201ENST00000306726 IBTKQ9P2D0 1353 aaPredicted RBP17.1■□□□□ 0.33
PTPN9-201ENST00000306726 SCN11AQ9UI33 1791 aa17.1■□□□□ 0.33
PTPN9-201ENST00000306726 CCDC171Q6TFL3 1326 aa17.1■□□□□ 0.33
PTPN9-201ENST00000306726 CLEC17AQ6ZS10 378 aa17.1■□□□□ 0.33
PTPN9-201ENST00000306726 SUCLG2Q96I99 432 aa17.1■□□□□ 0.33
PTPN9-201ENST00000306726 ST7Q9NRC1 585 aa17.1■□□□□ 0.33
PTPN9-201ENST00000306726 GPHNQ9NQX3 736 aaPredicted RBP17.09■□□□□ 0.33
PTPN9-201ENST00000306726 ELF2Q15723 593 aa17.09■□□□□ 0.33
PTPN9-201ENST00000306726 MRVI1Q9Y6F6 885 aa17.09■□□□□ 0.33
PTPN9-201ENST00000306726 ONECUT3O60422 494 aaPredicted RBP17.09■□□□□ 0.33
PTPN9-201ENST00000306726 KAT6BQ8WYB5 2073 aa17.09■□□□□ 0.33
PTPN9-201ENST00000306726 LEO1Q8WVC0 666 aaPredicted RBP17.08■□□□□ 0.33
PTPN9-201ENST00000306726 BCL9O00512 1426 aa17.08■□□□□ 0.32
PTPN9-201ENST00000306726 PES1O00541 588 aaKnown RBP17.08■□□□□ 0.32
PTPN9-201ENST00000306726 HMGB2P26583 209 aaKnown RBP17.08■□□□□ 0.32
PTPN9-201ENST00000306726 RBM6P78332 1123 aaKnown RBP17.08■□□□□ 0.32
PTPN9-201ENST00000306726 COPS6Q7L5N1 327 aa17.08■□□□□ 0.32
PTPN9-201ENST00000306726 KIAA1524Q8TCG1 905 aa17.08■□□□□ 0.32
PTPN9-201ENST00000306726 SHANK3Q9BYB0 1731 aa17.08■□□□□ 0.32
PTPN9-201ENST00000306726 CCDC144BQ3MJ40 725 aa17.08■□□□□ 0.32
PTPN9-201ENST00000306726 QTRT2Q9H974 415 aaKnown RBP17.08■□□□□ 0.32
PTPN9-201ENST00000306726 GLI3P10071 1580 aa17.07■□□□□ 0.32
PTPN9-201ENST00000306726 UVSSAQ2YD98 709 aa17.07■□□□□ 0.32
PTPN9-201ENST00000306726 ZSCAN31Q96LW9 406 aaPredicted RBP17.07■□□□□ 0.32
PTPN9-201ENST00000306726 C11orf57Q6ZUT1 292 aaPredicted RBP17.07■□□□□ 0.32
PTPN9-201ENST00000306726 SSH3Q8TE77 659 aa17.07■□□□□ 0.32
PTPN9-201ENST00000306726 NEK1Q96PY6 1258 aa17.07■□□□□ 0.32
PTPN9-201ENST00000306726 ZNF215Q9UL58 517 aaPredicted RBP17.07■□□□□ 0.32
PTPN9-201ENST00000306726 CCDC69A6NI79 296 aa17.07■□□□□ 0.32
PTPN9-201ENST00000306726 TFCP2Q12800 502 aa17.07■□□□□ 0.32
PTPN9-201ENST00000306726 RRP12Q5JTH9 1297 aaKnown RBP17.07■□□□□ 0.32
PTPN9-201ENST00000306726 SPECC1Q5M775 1068 aa17.07■□□□□ 0.32
PTPN9-201ENST00000306726 XAGE3Q8WTP9 111 aa17.07■□□□□ 0.32
PTPN9-201ENST00000306726 EVI5LQ96CN4 794 aa17.07■□□□□ 0.32
PTPN9-201ENST00000306726 DBNDD2Q9BQY9 259 aa17.06■□□□□ 0.32
PTPN9-201ENST00000306726 OSBPL3Q9H4L5 887 aa17.06■□□□□ 0.32
PTPN9-201ENST00000306726 RPAP1Q9BWH6 1393 aaPredicted RBP17.06■□□□□ 0.32
PTPN9-201ENST00000306726 A0A0G2JLW4 131 aa17.06■□□□□ 0.32
PTPN9-201ENST00000306726 CYP27B1O15528 508 aa17.06■□□□□ 0.32
PTPN9-201ENST00000306726 SCAND2PQ9GZW5 306 aaPredicted RBP17.06■□□□□ 0.32
PTPN9-201ENST00000306726 MTMR7Q9Y216 660 aa17.06■□□□□ 0.32
PTPN9-201ENST00000306726 URI1O94763 535 aaPredicted RBP17.06■□□□□ 0.32
PTPN9-201ENST00000306726 ZSCAN25Q6NSZ9 544 aa17.06■□□□□ 0.32
PTPN9-201ENST00000306726 SYT10Q6XYQ8 523 aa17.06■□□□□ 0.32
PTPN9-201ENST00000306726 TTC5Q8N0Z6 440 aa17.06■□□□□ 0.32
PTPN9-201ENST00000306726 CPLX3Q8WVH0 158 aa17.06■□□□□ 0.32
PTPN9-201ENST00000306726 ZNF594Q96JF6 807 aaPredicted RBP17.06■□□□□ 0.32
PTPN9-201ENST00000306726 ZBTB3Q9H5J0 574 aa17.06■□□□□ 0.32
PTPN9-201ENST00000306726 SYNE3Q6ZMZ3 975 aa17.05■□□□□ 0.32
PTPN9-201ENST00000306726 SH2B1Q9NRF2 756 aaPredicted RBP17.05■□□□□ 0.32
PTPN9-201ENST00000306726 DDX58O95786 925 aaKnown RBP17.05■□□□□ 0.32
PTPN9-201ENST00000306726 SERPINC1P01008 464 aa17.05■□□□□ 0.32
PTPN9-201ENST00000306726 SLC52A2Q9HAB3 445 aa17.05■□□□□ 0.32
PTPN9-201ENST00000306726 A0A087WZG4 1122 aa17.05■□□□□ 0.32
PTPN9-201ENST00000306726 HOXB7P09629 217 aa17.05■□□□□ 0.32
PTPN9-201ENST00000306726 MNS1Q8NEH6 495 aa17.05■□□□□ 0.32
PTPN9-201ENST00000306726 GTF2F1P35269 517 aaKnown RBP eCLIP17.04■□□□□ 0.32
PTPN9-201ENST00000306726 ZNF75DP51815 510 aa17.04■□□□□ 0.32
PTPN9-201ENST00000306726 CABP4P57796 275 aa17.04■□□□□ 0.32
PTPN9-201ENST00000306726 RGS12O14924 1447 aa17.04■□□□□ 0.32
PTPN9-201ENST00000306726 KDM6AO15550 1401 aaPredicted RBP17.04■□□□□ 0.32
PTPN9-201ENST00000306726 VPS53Q5VIR6 699 aa17.04■□□□□ 0.32
PTPN9-201ENST00000306726 EPC1Q9H2F5 836 aa17.04■□□□□ 0.32
PTPN9-201ENST00000306726 DBF4Q9UBU7 674 aaPredicted RBP17.04■□□□□ 0.32
PTPN9-201ENST00000306726 NRDCO43847 1150 aa17.04■□□□□ 0.32
PTPN9-201ENST00000306726 PLCD3Q8N3E9 789 aa17.04■□□□□ 0.32
PTPN9-201ENST00000306726 RNF216Q9NWF9 866 aaPredicted RBP17.04■□□□□ 0.32
PTPN9-201ENST00000306726 SIPA1L3O60292 1781 aaPredicted RBP17.04■□□□□ 0.32
PTPN9-201ENST00000306726 GRM8O00222 908 aa17.03■□□□□ 0.32
PTPN9-201ENST00000306726 FAM98CQ17RN3 349 aaKnown RBP17.03■□□□□ 0.32
PTPN9-201ENST00000306726 CFAP100Q494V2 611 aa17.03■□□□□ 0.32
PTPN9-201ENST00000306726 SMAP1Q8IYB5 467 aaPredicted RBP17.03■□□□□ 0.32
PTPN9-201ENST00000306726 NFATC2IPQ8NCF5 419 aa17.03■□□□□ 0.32
PTPN9-201ENST00000306726 IFNKQ9P0W0 207 aa17.03■□□□□ 0.32
PTPN9-201ENST00000306726 BEND3Q5T5X7 828 aa17.02■□□□□ 0.32
PTPN9-201ENST00000306726 NFXL1Q6ZNB6 911 aa17.02■□□□□ 0.32
PTPN9-201ENST00000306726 DNAI1Q9UI46 699 aa17.02■□□□□ 0.32
PTPN9-201ENST00000306726 VIRMAQ69YN4 1812 aaKnown RBP17.02■□□□□ 0.32
PTPN9-201ENST00000306726 KDM3BQ7LBC6 1761 aa17.02■□□□□ 0.32
PTPN9-201ENST00000306726 ERCC6LQ2NKX8 1250 aa17.02■□□□□ 0.31
PTPN9-201ENST00000306726 TTC14Q96N46 770 aa17.02■□□□□ 0.31
PTPN9-201ENST00000306726 TCHHQ07283 1943 aa17.02■□□□□ 0.31
PTPN9-201ENST00000306726 KLHL10Q6JEL2 608 aa17.01■□□□□ 0.31
PTPN9-201ENST00000306726 PGBD1Q96JS3 809 aa17.01■□□□□ 0.31
PTPN9-201ENST00000306726 USP28Q96RU2 1077 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms