RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 TRAF1Q13077 416 aa10.84□□□□□ -0.67
PTPRE-202ENST00000306042 SKOR2Q2VWA4 1001 aaPredicted RBP10.84□□□□□ -0.67
PTPRE-202ENST00000306042 ERFEQ4G0M1 354 aa10.84□□□□□ -0.67
PTPRE-202ENST00000306042 CCDC93Q567U6 631 aa10.84□□□□□ -0.67
PTPRE-202ENST00000306042 HMG20BQ9P0W2 317 aa10.84□□□□□ -0.67
PTPRE-202ENST00000306042 PIM2Q9P1W9 311 aa10.84□□□□□ -0.67
PTPRE-202ENST00000306042 NARFQ9UHQ1 456 aa10.84□□□□□ -0.67
PTPRE-202ENST00000306042 MST1RQ04912 1400 aa10.84□□□□□ -0.67
PTPRE-202ENST00000306042 TPM1P09493 284 aa10.84□□□□□ -0.67
PTPRE-202ENST00000306042 DBNDD2Q9BQY9 259 aa10.84□□□□□ -0.67
PTPRE-202ENST00000306042 DOK7Q18PE1 504 aa10.83□□□□□ -0.68
PTPRE-202ENST00000306042 MFSD14BQ5SR56 506 aa10.83□□□□□ -0.68
PTPRE-202ENST00000306042 CERS3Q8IU89 383 aa10.83□□□□□ -0.68
PTPRE-202ENST00000306042 MARCH10Q8NA82 808 aaPredicted RBP10.83□□□□□ -0.68
PTPRE-202ENST00000306042 GRIN3BO60391 1043 aa10.83□□□□□ -0.68
PTPRE-202ENST00000306042 CC2D2BQ6DHV5 1058 aa10.83□□□□□ -0.68
PTPRE-202ENST00000306042 CCDC12Q8WUD4 166 aaPredicted RBP10.83□□□□□ -0.68
PTPRE-202ENST00000306042 PNPLA6Q8IY17 1366 aa10.83□□□□□ -0.68
PTPRE-202ENST00000306042 NRXN1Q9ULB1 1477 aa10.83□□□□□ -0.68
PTPRE-202ENST00000306042 TNFAIP1Q13829 316 aa10.83□□□□□ -0.68
PTPRE-202ENST00000306042 PRKG1Q13976 671 aa10.83□□□□□ -0.68
PTPRE-202ENST00000306042 ZHX3Q9H4I2 956 aa10.83□□□□□ -0.68
PTPRE-202ENST00000306042 NPR1P16066 1061 aa10.83□□□□□ -0.68
PTPRE-202ENST00000306042 SSFA2P28290 1259 aa10.83□□□□□ -0.68
PTPRE-202ENST00000306042 WTAPQ15007 396 aa10.83□□□□□ -0.68
PTPRE-202ENST00000306042 MCM5P33992 734 aa10.82□□□□□ -0.68
PTPRE-202ENST00000306042 TTF2Q9UNY4 1162 aaKnown RBP10.82□□□□□ -0.68
PTPRE-202ENST00000306042 SLIT1O75093 1534 aa10.82□□□□□ -0.68
PTPRE-202ENST00000306042 XDHP47989 1333 aa10.82□□□□□ -0.68
PTPRE-202ENST00000306042 SSBP05455 408 aaKnown RBP eCLIP10.82□□□□□ -0.68
PTPRE-202ENST00000306042 TTLL5Q6EMB2 1281 aa10.82□□□□□ -0.68
PTPRE-202ENST00000306042 MICU3Q86XE3 530 aa10.82□□□□□ -0.68
PTPRE-202ENST00000306042 ZNF526Q8TF50 670 aaPredicted RBP10.82□□□□□ -0.68
PTPRE-202ENST00000306042 NEK1Q96PY6 1258 aa10.82□□□□□ -0.68
PTPRE-202ENST00000306042 SH2D4AQ9H788 454 aa10.82□□□□□ -0.68
PTPRE-202ENST00000306042 MBD4O95243 580 aa10.82□□□□□ -0.68
PTPRE-202ENST00000306042 BEND3Q5T5X7 828 aa10.82□□□□□ -0.68
PTPRE-202ENST00000306042 IFIT1BQ5T764 474 aaKnown RBP10.82□□□□□ -0.68
PTPRE-202ENST00000306042 NLRP10Q86W26 655 aa10.82□□□□□ -0.68
PTPRE-202ENST00000306042 ARHGEF1Q92888 912 aaKnown RBP10.82□□□□□ -0.68
PTPRE-202ENST00000306042 K7ELQ4 463 aaPredicted RBP10.82□□□□□ -0.68
PTPRE-202ENST00000306042 SDSP20132 328 aa10.82□□□□□ -0.68
PTPRE-202ENST00000306042 SSRP1Q08945 709 aaKnown RBP10.82□□□□□ -0.68
PTPRE-202ENST00000306042 PLS1Q14651 629 aa10.82□□□□□ -0.68
PTPRE-202ENST00000306042 TMTC2Q8N394 836 aa10.82□□□□□ -0.68
PTPRE-202ENST00000306042 TEKT1Q969V4 418 aa10.82□□□□□ -0.68
PTPRE-202ENST00000306042 MASTLQ96GX5 879 aa10.82□□□□□ -0.68
PTPRE-202ENST00000306042 GREM2Q9H772 168 aa10.82□□□□□ -0.68
PTPRE-202ENST00000306042 SASS6Q6UVJ0 657 aa10.81□□□□□ -0.68
PTPRE-202ENST00000306042 HOMER1Q86YM7 354 aa10.81□□□□□ -0.68
PTPRE-202ENST00000306042 TMEM131LA2VDJ0 1609 aa10.81□□□□□ -0.68
PTPRE-202ENST00000306042 COL15A1P39059 1388 aa10.81□□□□□ -0.68
PTPRE-202ENST00000306042 TPM3P06753 285 aa10.81□□□□□ -0.68
PTPRE-202ENST00000306042 NLRP5P59047 1200 aa10.81□□□□□ -0.68
PTPRE-202ENST00000306042 CHRNDQ07001 517 aa10.81□□□□□ -0.68
PTPRE-202ENST00000306042 SULF1Q8IWU6 871 aa10.81□□□□□ -0.68
PTPRE-202ENST00000306042 DCPSQ96C86 337 aaKnown RBP10.81□□□□□ -0.68
PTPRE-202ENST00000306042 BMP2KQ9NSY1 1161 aaPredicted RBP10.81□□□□□ -0.68
PTPRE-202ENST00000306042 SAP30BPQ9UHR5 308 aaKnown RBP10.81□□□□□ -0.68
PTPRE-202ENST00000306042 CCDC194A0A1B0GVG4 234 aa10.81□□□□□ -0.68
PTPRE-202ENST00000306042 KINO60870 393 aaKnown RBP10.81□□□□□ -0.68
PTPRE-202ENST00000306042 RTKN2Q8IZC4 609 aa10.81□□□□□ -0.68
PTPRE-202ENST00000306042 ZNF710Q8N1W2 664 aa10.81□□□□□ -0.68
PTPRE-202ENST00000306042 SPATA5Q8NB90 893 aa10.81□□□□□ -0.68
PTPRE-202ENST00000306042 KIAA0825Q8IV33 1275 aa10.8□□□□□ -0.68
PTPRE-202ENST00000306042 USP44Q9H0E7 712 aa10.8□□□□□ -0.68
PTPRE-202ENST00000306042 MYO3AQ8NEV4 1616 aa10.8□□□□□ -0.68
PTPRE-202ENST00000306042 ZNF804BA4D1E1 1349 aa10.8□□□□□ -0.68
PTPRE-202ENST00000306042 NMIQ13287 307 aaPredicted RBP10.8□□□□□ -0.68
PTPRE-202ENST00000306042 RAB3GAP1Q15042 981 aa10.8□□□□□ -0.68
PTPRE-202ENST00000306042 TBC1D9Q6ZT07 1266 aa10.8□□□□□ -0.68
PTPRE-202ENST00000306042 CCDC83Q8IWF9 413 aa10.8□□□□□ -0.68
PTPRE-202ENST00000306042 CCDC144CPQ8IYA2 1237 aa10.8□□□□□ -0.68
PTPRE-202ENST00000306042 SCLT1Q96NL6 688 aa10.8□□□□□ -0.68
PTPRE-202ENST00000306042 LEMD3Q9Y2U8 911 aa10.8□□□□□ -0.68
PTPRE-202ENST00000306042 FIBPO43427 364 aa10.8□□□□□ -0.68
PTPRE-202ENST00000306042 ECM2O94769 699 aaPredicted RBP10.8□□□□□ -0.68
PTPRE-202ENST00000306042 EPS15P42566 896 aa10.8□□□□□ -0.68
PTPRE-202ENST00000306042 ME1P48163 572 aa10.8□□□□□ -0.68
PTPRE-202ENST00000306042 TMOD4Q9NZQ9 345 aa10.8□□□□□ -0.68
PTPRE-202ENST00000306042 BCORL1Q5H9F3 1711 aa10.8□□□□□ -0.68
PTPRE-202ENST00000306042 WDR33Q9C0J8 1336 aaKnown RBP10.8□□□□□ -0.68
PTPRE-202ENST00000306042 CYP19A1P11511 503 aaPredicted RBP10.8□□□□□ -0.68
PTPRE-202ENST00000306042 GYG1P46976 350 aa10.8□□□□□ -0.68
PTPRE-202ENST00000306042 TCP10Q12799 353 aa10.8□□□□□ -0.68
PTPRE-202ENST00000306042 SH2B1Q9NRF2 756 aaPredicted RBP10.8□□□□□ -0.68
PTPRE-202ENST00000306042 PNMA6EA0A0J9YXQ4 647 aa10.79□□□□□ -0.68
PTPRE-202ENST00000306042 IARSP41252 1262 aaKnown RBP10.79□□□□□ -0.68
PTPRE-202ENST00000306042 METAP2P50579 478 aaKnown RBP eCLIP10.79□□□□□ -0.68
PTPRE-202ENST00000306042 CCT2P78371 535 aaKnown RBP10.79□□□□□ -0.68
PTPRE-202ENST00000306042 OLFM4Q6UX06 510 aa10.79□□□□□ -0.68
PTPRE-202ENST00000306042 AATFQ9NY61 560 aaKnown RBP eCLIP10.79□□□□□ -0.68
PTPRE-202ENST00000306042 ARHGAP23Q9P227 1491 aa10.79□□□□□ -0.68
PTPRE-202ENST00000306042 IBSPP21815 317 aaPredicted RBP10.79□□□□□ -0.68
PTPRE-202ENST00000306042 GNAQP50148 359 aa10.79□□□□□ -0.68
PTPRE-202ENST00000306042 C8orf76Q96K31 380 aa10.79□□□□□ -0.68
PTPRE-202ENST00000306042 FAM13BQ9NYF5 915 aa10.79□□□□□ -0.68
PTPRE-202ENST00000306042 PDIA4P13667 645 aaKnown RBP10.79□□□□□ -0.68
PTPRE-202ENST00000306042 BACH2Q9BYV9 841 aa10.79□□□□□ -0.68
PTPRE-202ENST00000306042 TAOK3Q9H2K8 898 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms