RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 CCDC12Q8WUD4 166 aaPredicted RBP8.92□□□□□ -0.98
SCN9A-201ENST00000303354 LIMCH1Q9UPQ0 1083 aa8.92□□□□□ -0.98
SCN9A-201ENST00000303354 CCP110O43303 1012 aa8.92□□□□□ -0.98
SCN9A-201ENST00000303354 FAM13AO94988 1023 aa8.92□□□□□ -0.98
SCN9A-201ENST00000303354 PIK3R4Q99570 1358 aa8.92□□□□□ -0.98
SCN9A-201ENST00000303354 EZRP15311 586 aaKnown RBP8.92□□□□□ -0.98
SCN9A-201ENST00000303354 MCM5P33992 734 aa8.92□□□□□ -0.98
SCN9A-201ENST00000303354 NCBP1Q09161 790 aaKnown RBP8.92□□□□□ -0.98
SCN9A-201ENST00000303354 CCDC50Q8IVM0 306 aa8.92□□□□□ -0.98
SCN9A-201ENST00000303354 GGA1Q9UJY5 639 aa8.92□□□□□ -0.98
SCN9A-201ENST00000303354 MAPK8IP1Q9UQF2 711 aa8.92□□□□□ -0.98
SCN9A-201ENST00000303354 UQCRHLA0A096LP55 91 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 CLRN2A0PK11 232 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 UQCRHP07919 91 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 KCNA4P22459 653 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 HIBADHP31937 336 aaKnown RBP8.91□□□□□ -0.98
SCN9A-201ENST00000303354 TBC1D10BQ4KMP7 808 aaPredicted RBP8.91□□□□□ -0.98
SCN9A-201ENST00000303354 SSX2IPQ9Y2D8 614 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 AMPD3Q01432 767 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 CEP135Q66GS9 1140 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 SMCR8Q8TEV9 937 aaPredicted RBP8.91□□□□□ -0.98
SCN9A-201ENST00000303354 ESR2Q92731 530 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 EYA3Q99504 573 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 MYL10Q9BUA6 226 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 PRDM10Q9NQV6 1147 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 TGFBRAP1Q8WUH2 860 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 BACH2Q9BYV9 841 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 ASIC1P78348 528 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 B4E1Z4 1266 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 Q3C1V9 767 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 CLSTN2Q9H4D0 955 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 IVNS1ABPQ9Y6Y0 642 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 HMGB1P09429 215 aaKnown RBP8.91□□□□□ -0.98
SCN9A-201ENST00000303354 NOP9Q86U38 636 aaKnown RBP8.91□□□□□ -0.98
SCN9A-201ENST00000303354 RSPH6AQ9H0K4 717 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 RASA3Q14644 834 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 DNAJC10Q8IXB1 793 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 CCDC87Q9NVE4 849 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 ANO10Q9NW15 660 aa8.91□□□□□ -0.98
SCN9A-201ENST00000303354 MCMDC2Q4G0Z9 681 aa8.9□□□□□ -0.98
SCN9A-201ENST00000303354 ZGPATQ8N5A5 531 aaKnown RBP8.9□□□□□ -0.98
SCN9A-201ENST00000303354 JADE2Q9NQC1 790 aa8.9□□□□□ -0.98
SCN9A-201ENST00000303354 CNPY2Q9Y2B0 182 aa8.9□□□□□ -0.98
SCN9A-201ENST00000303354 TCIRG1Q13488 830 aa8.9□□□□□ -0.98
SCN9A-201ENST00000303354 FRMPD2Q68DX3 1309 aaPredicted RBP8.9□□□□□ -0.98
SCN9A-201ENST00000303354 IGBP1P78318 339 aa8.9□□□□□ -0.98
SCN9A-201ENST00000303354 NSMFQ6X4W1 530 aa8.9□□□□□ -0.98
SCN9A-201ENST00000303354 NOP56O00567 594 aaKnown RBP8.9□□□□□ -0.98
SCN9A-201ENST00000303354 CETN1Q12798 172 aa8.9□□□□□ -0.98
SCN9A-201ENST00000303354 PPP1R16BQ96T49 567 aa8.9□□□□□ -0.98
SCN9A-201ENST00000303354 RIMS2Q9UQ26 1411 aa8.9□□□□□ -0.98
SCN9A-201ENST00000303354 SDSP20132 328 aa8.9□□□□□ -0.98
SCN9A-201ENST00000303354 KSR2Q6VAB6 950 aa8.9□□□□□ -0.98
SCN9A-201ENST00000303354 GSTA5Q7RTV2 222 aa8.9□□□□□ -0.98
SCN9A-201ENST00000303354 ALDH1L2Q3SY69 923 aa8.9□□□□□ -0.99
SCN9A-201ENST00000303354 C6orf50Q9HD87 102 aa8.9□□□□□ -0.99
SCN9A-201ENST00000303354 PTPRCP08575 1304 aa8.9□□□□□ -0.99
SCN9A-201ENST00000303354 KRT13P13646 458 aa8.9□□□□□ -0.99
SCN9A-201ENST00000303354 PHACTR3Q96KR7 559 aa8.9□□□□□ -0.99
SCN9A-201ENST00000303354 GRIPAP1Q4V328 841 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 NCAPH2Q6IBW4 605 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 C2CD5Q86YS7 1000 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 KIAA0825Q8IV33 1275 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 CCDC63Q8NA47 563 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 KRT23Q9C075 422 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 PLCB3Q01970 1234 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 RAPGEF1Q13905 1077 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 VPS36Q86VN1 386 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 NIM1KQ8IY84 436 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 TRIM6Q9C030 488 aaPredicted RBP8.89□□□□□ -0.99
SCN9A-201ENST00000303354 FAM107BQ9H098 131 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 KIF5CO60282 957 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 KRT19P08727 400 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 NKX1-1Q15270 411 aaPredicted RBP8.89□□□□□ -0.99
SCN9A-201ENST00000303354 KIAA0754O94854 1291 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 YEATS4O95619 227 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 CFBP00751 764 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 UTP14CQ5TAP6 766 aaKnown RBP8.89□□□□□ -0.99
SCN9A-201ENST00000303354 CCDC91Q7Z6B0 441 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 SESTD1Q86VW0 696 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 RDH13Q8NBN7 331 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 H7C1D1 291 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 HMGB2P26583 209 aaKnown RBP8.89□□□□□ -0.99
SCN9A-201ENST00000303354 NCAPG2Q86XI2 1143 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 CCNT1O60563 726 aaKnown RBP8.89□□□□□ -0.99
SCN9A-201ENST00000303354 BIRC2Q13490 618 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 POLKQ9UBT6 870 aa8.89□□□□□ -0.99
SCN9A-201ENST00000303354 METTL13Q8N6R0 699 aa8.88□□□□□ -0.99
SCN9A-201ENST00000303354 ABT1Q9ULW3 272 aaKnown RBP8.88□□□□□ -0.99
SCN9A-201ENST00000303354 FGFR1OPO95684 399 aaKnown RBP8.88□□□□□ -0.99
SCN9A-201ENST00000303354 RNASE9P60153 205 aaKnown RBP8.88□□□□□ -0.99
SCN9A-201ENST00000303354 STXBP4Q6ZWJ1 553 aa8.88□□□□□ -0.99
SCN9A-201ENST00000303354 TTLL3Q9Y4R7 772 aa8.88□□□□□ -0.99
SCN9A-201ENST00000303354 GPR101Q96P66 508 aaPredicted RBP8.88□□□□□ -0.99
SCN9A-201ENST00000303354 PARP1P09874 1014 aaKnown RBP8.88□□□□□ -0.99
SCN9A-201ENST00000303354 MCM4P33991 863 aa8.88□□□□□ -0.99
SCN9A-201ENST00000303354 RNF187Q5TA31 235 aaPredicted RBP8.88□□□□□ -0.99
SCN9A-201ENST00000303354 MAATS1Q7Z4T9 603 aa8.88□□□□□ -0.99
SCN9A-201ENST00000303354 C16orf45Q96MC5 204 aaPredicted RBP8.88□□□□□ -0.99
SCN9A-201ENST00000303354 N4BP3O15049 544 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms