RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 GBP6Q6ZN66 633 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 KCNH5Q8NCM2 988 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 CCDC42Q96M95 316 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 RAB3IPQ96QF0 476 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-201ENST00000302528 VPS18Q9P253 973 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 WTAPQ15007 396 aa11.73□□□□□ -0.53
CLIP1-201ENST00000302528 HEATR3Q7Z4Q2 680 aa11.73□□□□□ -0.53
CLIP1-201ENST00000302528 ZNF622Q969S3 477 aaKnown RBP eCLIP11.73□□□□□ -0.531e-6■■□□□ 14.2
CLIP1-201ENST00000302528 ZSCAN16Q9H4T2 348 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-201ENST00000302528 MTUS1Q9ULD2 1270 aa11.73□□□□□ -0.53
CLIP1-201ENST00000302528 SDCCAG8Q86SQ7 713 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-201ENST00000302528 CALM1P0DP23 149 aa11.73□□□□□ -0.53
CLIP1-201ENST00000302528 CALM2P0DP24 149 aa11.73□□□□□ -0.53
CLIP1-201ENST00000302528 CALM3P0DP25 149 aa11.73□□□□□ -0.53
CLIP1-201ENST00000302528 B4DLN1 442 aa11.73□□□□□ -0.53
CLIP1-201ENST00000302528 GIPC1O14908 333 aa11.73□□□□□ -0.53
CLIP1-201ENST00000302528 VAV2P52735 878 aa11.73□□□□□ -0.53
CLIP1-201ENST00000302528 MRPL12P52815 198 aaKnown RBP11.73□□□□□ -0.53
CLIP1-201ENST00000302528 ATP11AP98196 1134 aa11.73□□□□□ -0.53
CLIP1-201ENST00000302528 ATP2B3Q16720 1220 aa11.73□□□□□ -0.53
CLIP1-201ENST00000302528 LDHAL6AQ6ZMR3 332 aa11.73□□□□□ -0.53
CLIP1-201ENST00000302528 RSPH3Q86UC2 560 aa11.73□□□□□ -0.53
CLIP1-201ENST00000302528 CACYBPQ9HB71 228 aaKnown RBP11.73□□□□□ -0.53
CLIP1-201ENST00000302528 NESP48681 1621 aa11.73□□□□□ -0.53
CLIP1-201ENST00000302528 PCK1P35558 622 aa11.73□□□□□ -0.53
CLIP1-201ENST00000302528 IRX5P78411 483 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-201ENST00000302528 E7EVH7 732 aa11.72□□□□□ -0.53
CLIP1-201ENST00000302528 NEK11Q8NG66 645 aa11.72□□□□□ -0.53
CLIP1-201ENST00000302528 KIFC2Q96AC6 838 aa11.72□□□□□ -0.53
CLIP1-201ENST00000302528 FAM204AQ9H8W3 233 aa11.72□□□□□ -0.53
CLIP1-201ENST00000302528 HCLS1P14317 486 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-201ENST00000302528 TBC1D31Q96DN5 1066 aa11.72□□□□□ -0.53
CLIP1-201ENST00000302528 RBM27Q9P2N5 1060 aaKnown RBP11.72□□□□□ -0.53
CLIP1-201ENST00000302528 AFG3L2Q9Y4W6 797 aa11.72□□□□□ -0.53
CLIP1-201ENST00000302528 ARID4AP29374 1257 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-201ENST00000302528 TNNC1P63316 161 aa11.72□□□□□ -0.53
CLIP1-201ENST00000302528 GIMAP6Q6P9H5 292 aa11.72□□□□□ -0.53
CLIP1-201ENST00000302528 UBLCP1Q8WVY7 318 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-201ENST00000302528 IFT74Q96LB3 600 aa11.72□□□□□ -0.53
CLIP1-201ENST00000302528 TMPOP42166 694 aaKnown RBP11.72□□□□□ -0.53
CLIP1-201ENST00000302528 FAM160A1Q05DH4 1040 aa11.72□□□□□ -0.53
CLIP1-201ENST00000302528 FYB2Q5VWT5 728 aa11.72□□□□□ -0.53
CLIP1-201ENST00000302528 HS2ST1Q7LGA3 356 aa11.72□□□□□ -0.53
CLIP1-201ENST00000302528 LMNTD2Q8IXW0 634 aa11.72□□□□□ -0.53
CLIP1-201ENST00000302528 PPP1R12CQ9BZL4 782 aa11.72□□□□□ -0.53
CLIP1-201ENST00000302528 ECHDC1Q9NTX5 307 aa11.72□□□□□ -0.53
CLIP1-201ENST00000302528 EPRSP07814 1512 aaKnown RBP11.72□□□□□ -0.53
CLIP1-201ENST00000302528 IFIT1BQ5T764 474 aaKnown RBP11.71□□□□□ -0.53
CLIP1-201ENST00000302528 SEL1L2Q5TEA6 688 aa11.71□□□□□ -0.53
CLIP1-201ENST00000302528 GKAP1Q5VSY0 366 aaPredicted RBP11.71□□□□□ -0.53
CLIP1-201ENST00000302528 ANKLE2Q86XL3 938 aa11.71□□□□□ -0.53
CLIP1-201ENST00000302528 KLF18A0A0U1RQI7 1052 aa11.71□□□□□ -0.53
CLIP1-201ENST00000302528 VIMP08670 466 aaKnown RBP11.71□□□□□ -0.53
CLIP1-201ENST00000302528 ATP5DP30049 168 aa11.71□□□□□ -0.53
CLIP1-201ENST00000302528 MAP7Q14244 749 aa11.71□□□□□ -0.53
CLIP1-201ENST00000302528 GPR161Q8N6U8 529 aaKnown RBP11.71□□□□□ -0.53
CLIP1-201ENST00000302528 ZNF853P0CG23 659 aa11.71□□□□□ -0.53
CLIP1-201ENST00000302528 SYT1P21579 422 aa11.71□□□□□ -0.53
CLIP1-201ENST00000302528 ERCC5P28715 1186 aaPredicted RBP11.71□□□□□ -0.53
CLIP1-201ENST00000302528 PLS1Q14651 629 aa11.71□□□□□ -0.53
CLIP1-201ENST00000302528 CCDC170Q8IYT3 715 aa11.71□□□□□ -0.53
CLIP1-201ENST00000302528 DACT3Q96B18 629 aaPredicted RBP11.71□□□□□ -0.53
CLIP1-201ENST00000302528 ZBTB3Q9H5J0 574 aa11.71□□□□□ -0.53
CLIP1-201ENST00000302528 HMG20BQ9P0W2 317 aa11.71□□□□□ -0.53
CLIP1-201ENST00000302528 GUCA1BQ9UMX6 200 aa11.71□□□□□ -0.53
CLIP1-201ENST00000302528 CUL7Q14999 1698 aa11.71□□□□□ -0.53
CLIP1-201ENST00000302528 MGEA5O60502 916 aa11.71□□□□□ -0.54
CLIP1-201ENST00000302528 NAPAP54920 295 aa11.71□□□□□ -0.54
CLIP1-201ENST00000302528 PDE1CQ14123 709 aaPredicted RBP11.71□□□□□ -0.54
CLIP1-201ENST00000302528 AFAP1L2Q8N4X5 818 aa11.71□□□□□ -0.54
CLIP1-201ENST00000302528 KCNG4Q8TDN1 519 aa11.71□□□□□ -0.54
CLIP1-201ENST00000302528 WDR46O15213 610 aaKnown RBP11.71□□□□□ -0.54
CLIP1-201ENST00000302528 IRX3P78415 501 aaPredicted RBP11.71□□□□□ -0.54
CLIP1-201ENST00000302528 ANO6Q4KMQ2 910 aa11.71□□□□□ -0.54
CLIP1-201ENST00000302528 PROCA1Q8NCQ7 364 aaPredicted RBP11.71□□□□□ -0.54
CLIP1-201ENST00000302528 LEO1Q8WVC0 666 aaPredicted RBP11.71□□□□□ -0.54
CLIP1-201ENST00000302528 RNF34Q969K3 372 aa11.71□□□□□ -0.54
CLIP1-201ENST00000302528 ALG1Q9BT22 464 aa11.71□□□□□ -0.54
CLIP1-201ENST00000302528 KRT23Q9C075 422 aa11.71□□□□□ -0.54
CLIP1-201ENST00000302528 ZBTB43O43298 467 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 STMN1P16949 149 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 WHAMMQ8TF30 809 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 THUMPD2Q9BTF0 503 aaKnown RBP11.7□□□□□ -0.54
CLIP1-201ENST00000302528 HDAC9Q9UKV0 1011 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 AGTPBP1Q9UPW5 1226 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 CLEC11AQ9Y240 323 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 MCM7P33993 719 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 FAM76AQ8TAV0 307 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 RABGAP1Q9Y3P9 1069 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 GRIN2BQ13224 1484 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 A0A1B0GUA9 196 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 F6X3S4 739 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 ZBTB9Q96C00 473 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 RIOK3O14730 519 aaKnown RBP11.7□□□□□ -0.54
CLIP1-201ENST00000302528 GNAQP50148 359 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 AMOTQ4VCS5 1084 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 CCDC186Q7Z3E2 898 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 ZNF710Q8N1W2 664 aa11.7□□□□□ -0.54
CLIP1-201ENST00000302528 ZNF830Q96NB3 372 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-201ENST00000302528 NCAPGQ9BPX3 1015 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms