RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 IGSF3O75054 1194 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 CCDC174Q6PII3 467 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 LCA5Q86VQ0 697 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 ZBTB9Q96C00 473 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 CCDC51Q96ER9 411 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 MEIS3Q99687 375 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 C1orf115Q9H7X2 142 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 PHAXQ9H814 394 aaKnown RBP7.33□□□□□ -1.24
VPS35-201ENST00000299138 RIOK3O14730 519 aaKnown RBP7.32□□□□□ -1.24
VPS35-201ENST00000299138 SKILP12757 684 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 KCNH5Q8NCM2 988 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 CCDC148Q8NFR7 591 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 EFCAB8A8MWE9 144 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 CASQ1P31415 396 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 PSME1Q06323 249 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 PRPF31Q8WWY3 499 aaKnown RBP7.32□□□□□ -1.24
VPS35-201ENST00000299138 MRPS27Q92552 414 aaKnown RBP7.32□□□□□ -1.24
VPS35-201ENST00000299138 TTC14Q96N46 770 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 C9orf78Q9NZ63 289 aaPredicted RBP7.32□□□□□ -1.24
VPS35-201ENST00000299138 ANKRD26Q9UPS8 1709 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 ARHGAP6O43182 974 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 CASTP20810 708 aaKnown RBP7.32□□□□□ -1.24
VPS35-201ENST00000299138 SAFBQ15424 915 aaKnown RBP eCLIP7.32□□□□□ -1.24
VPS35-201ENST00000299138 CEP112Q8N8E3 955 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 MYO1AQ9UBC5 1043 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 ELL2O00472 640 aaPredicted RBP7.32□□□□□ -1.24
VPS35-201ENST00000299138 KIF5BP33176 963 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 ZSCAN25Q6NSZ9 544 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 LINS1Q8NG48 757 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 MTA3Q9BTC8 594 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 TANGO6Q9C0B7 1094 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 BRMS1Q9HCU9 246 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 RAI14Q9P0K7 980 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 ANKARQ7Z5J8 1434 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 WDR19Q8NEZ3 1342 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 PPLO60437 1756 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 SRGAP3O43295 1099 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 TMEM132AQ24JP5 1023 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 SPECC1LQ69YQ0 1117 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 SNX14Q9Y5W7 946 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 MAP3K15Q6ZN16 1313 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 CHMP2AO43633 222 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 HMOX1P09601 288 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 ATP2B1P20020 1258 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 EXOC4Q96A65 974 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 RSRC1Q96IZ7 334 aaKnown RBP7.32□□□□□ -1.24
VPS35-201ENST00000299138 PSMD1Q99460 953 aa7.32□□□□□ -1.24
VPS35-201ENST00000299138 RBM27Q9P2N5 1060 aaKnown RBP7.32□□□□□ -1.24
VPS35-201ENST00000299138 URI1O94763 535 aaPredicted RBP7.31□□□□□ -1.24
VPS35-201ENST00000299138 AK2P54819 239 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 MXRA7P84157 204 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 GPR161Q8N6U8 529 aaKnown RBP7.31□□□□□ -1.24
VPS35-201ENST00000299138 FUCA2Q9BTY2 467 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 GPR108Q9NPR9 543 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 LIG1P18858 919 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 GRIPAP1Q4V328 841 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 CFAP58Q5T655 872 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 LRCH2Q5VUJ6 765 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 TRIML1Q8N9V2 468 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 FSD1Q9BTV5 496 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 SPATA31D1Q6ZQQ2 1576 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 TERF2Q15554 542 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 NUTM2GQ5VZR2 741 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 RUBCNQ92622 972 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 CTAGE1Q96RT6 745 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 L2HGDHQ9H9P8 463 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 ARFGAP3Q9NP61 516 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 RCOR1Q9UKL0 485 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 GCOM1H8Y6P7 765 aaPredicted RBP7.31□□□□□ -1.24
VPS35-201ENST00000299138 CD2BP2O95400 341 aaKnown RBP7.31□□□□□ -1.24
VPS35-201ENST00000299138 MYZAPP0CAP1 466 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 ETF1P62495 437 aaKnown RBP7.31□□□□□ -1.24
VPS35-201ENST00000299138 STK38Q15208 465 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 SPECC1Q5M775 1068 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 LARP1Q6PKG0 1096 aaKnown RBP7.31□□□□□ -1.24
VPS35-201ENST00000299138 IGSF1Q8N6C5 1336 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 PPP2R5BQ15173 497 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 CCDC158Q5M9N0 1113 aa7.31□□□□□ -1.24
VPS35-201ENST00000299138 TTC12Q9H892 705 aaPredicted RBP7.31□□□□□ -1.24
VPS35-201ENST00000299138 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.31□□□□□ -1.24
VPS35-201ENST00000299138 DNA2P51530 1060 aa7.3□□□□□ -1.24
VPS35-201ENST00000299138 PLA2G4DQ86XP0 818 aa7.3□□□□□ -1.24
VPS35-201ENST00000299138 MAP4K1Q92918 833 aa7.3□□□□□ -1.24
VPS35-201ENST00000299138 LUC7LQ9NQ29 371 aaKnown RBP7.3□□□□□ -1.24
VPS35-201ENST00000299138 MTMR7Q9Y216 660 aa7.3□□□□□ -1.24
VPS35-201ENST00000299138 BRD2P25440 801 aaKnown RBP7.3□□□□□ -1.24
VPS35-201ENST00000299138 RABGGTAQ92696 567 aa7.3□□□□□ -1.24
VPS35-201ENST00000299138 TAF4BQ92750 862 aa7.3□□□□□ -1.24
VPS35-201ENST00000299138 LSG1Q9H089 658 aaKnown RBP7.3□□□□□ -1.24
VPS35-201ENST00000299138 CWC25Q9NXE8 425 aaPredicted RBP7.3□□□□□ -1.24
VPS35-201ENST00000299138 EMILIN1Q9Y6C2 1016 aa7.3□□□□□ -1.24
VPS35-201ENST00000299138 A0A1B0GUL7 405 aa7.3□□□□□ -1.24
VPS35-201ENST00000299138 SSBP05455 408 aaKnown RBP eCLIP7.3□□□□□ -1.24
VPS35-201ENST00000299138 CEBPAP49715 358 aaPredicted RBP7.3□□□□□ -1.24
VPS35-201ENST00000299138 CLNS1AP54105 237 aaKnown RBP7.3□□□□□ -1.24
VPS35-201ENST00000299138 TRIM14Q14142 442 aa7.3□□□□□ -1.24
VPS35-201ENST00000299138 TSPYL6Q8N831 410 aa7.3□□□□□ -1.24
VPS35-201ENST00000299138 DACT1Q9NYF0 836 aa7.3□□□□□ -1.24
VPS35-201ENST00000299138 ABCC12Q96J65 1359 aa7.3□□□□□ -1.24
VPS35-201ENST00000299138 GSTTP1A0A1W2PQM5 241 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms