RNA–Protein interactions for RNA: ENST00000297423.8

SPIDR-201, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SPIDR, Length 3,988 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-201ENST00000297423 SOS2Q07890 1332 aaPredicted RBP17.27■□□□□ 0.36
SPIDR-201ENST00000297423 EDC3Q96F86 508 aaKnown RBP17.27■□□□□ 0.35
SPIDR-201ENST00000297423 SOS1Q07889 1333 aaPredicted RBP17.27■□□□□ 0.35
SPIDR-201ENST00000297423 CABP4P57796 275 aa17.26■□□□□ 0.35
SPIDR-201ENST00000297423 TDRD7Q8NHU6 1098 aaKnown RBP17.26■□□□□ 0.35
SPIDR-201ENST00000297423 XPO4Q9C0E2 1151 aaKnown RBP17.26■□□□□ 0.35
SPIDR-201ENST00000297423 RGPD1P0DJD0 1748 aa17.26■□□□□ 0.35
SPIDR-201ENST00000297423 PI4KAP2A4QPH2 592 aa17.26■□□□□ 0.35
SPIDR-201ENST00000297423 PIP4K2BP78356 416 aa17.26■□□□□ 0.35
SPIDR-201ENST00000297423 OTUD7BQ6GQQ9 843 aa17.26■□□□□ 0.35
SPIDR-201ENST00000297423 PI4KAP1Q8N8J0 262 aa17.26■□□□□ 0.35
SPIDR-201ENST00000297423 PGBD1Q96JS3 809 aa17.26■□□□□ 0.35
SPIDR-201ENST00000297423 VPS18Q9P253 973 aa17.26■□□□□ 0.35
SPIDR-201ENST00000297423 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.26■□□□□ 0.352e-6■■■■□ 25.9
SPIDR-201ENST00000297423 ATP10DQ9P241 1426 aa17.25■□□□□ 0.35
SPIDR-201ENST00000297423 KARSQ15046 597 aaKnown RBP17.25■□□□□ 0.35
SPIDR-201ENST00000297423 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.25■□□□□ 0.35
SPIDR-201ENST00000297423 TXLNBQ8N3L3 684 aa17.25■□□□□ 0.35
SPIDR-201ENST00000297423 PLA2G4DQ86XP0 818 aa17.25■□□□□ 0.35
SPIDR-201ENST00000297423 TTC14Q96N46 770 aa17.25■□□□□ 0.35
SPIDR-201ENST00000297423 SMARCE1Q969G3 411 aa17.25■□□□□ 0.35
SPIDR-201ENST00000297423 DRC1Q96MC2 740 aa17.25■□□□□ 0.35
SPIDR-201ENST00000297423 PLEKHA4Q9H4M7 779 aa17.25■□□□□ 0.35
SPIDR-201ENST00000297423 RABEP2Q9H5N1 569 aa17.25■□□□□ 0.35
SPIDR-201ENST00000297423 STRCP1A6NGW2 1772 aa17.25■□□□□ 0.35
SPIDR-201ENST00000297423 KIF2AO00139 706 aaPredicted RBP17.24■□□□□ 0.35
SPIDR-201ENST00000297423 EIF4A1P60842 406 aaKnown RBP17.24■□□□□ 0.35
SPIDR-201ENST00000297423 USP44Q9H0E7 712 aa17.24■□□□□ 0.35
SPIDR-201ENST00000297423 ECHDC1Q9NTX5 307 aa17.24■□□□□ 0.35
SPIDR-201ENST00000297423 PUF60Q9UHX1 559 aaKnown RBP17.24■□□□□ 0.35
SPIDR-201ENST00000297423 KCNQ3O43525 872 aa17.24■□□□□ 0.35
SPIDR-201ENST00000297423 APPP05067 770 aa17.24■□□□□ 0.35
SPIDR-201ENST00000297423 CPLX3Q8WVH0 158 aa17.24■□□□□ 0.35
SPIDR-201ENST00000297423 FAM193AP78312 1265 aa17.24■□□□□ 0.35
SPIDR-201ENST00000297423 COL9A3Q14050 684 aaPredicted RBP17.24■□□□□ 0.35
SPIDR-201ENST00000297423 HSP90B2PQ58FF3 399 aa17.24■□□□□ 0.35
SPIDR-201ENST00000297423 ZNF330Q9Y3S2 320 aaPredicted RBP17.24■□□□□ 0.35
SPIDR-201ENST00000297423 ATP2B1P20020 1258 aa17.23■□□□□ 0.35
SPIDR-201ENST00000297423 GSDMDP57764 484 aa17.23■□□□□ 0.35
SPIDR-201ENST00000297423 DHX37Q8IY37 1157 aaKnown RBP17.23■□□□□ 0.35
SPIDR-201ENST00000297423 TSPYL1Q9H0U9 437 aa17.23■□□□□ 0.35
SPIDR-201ENST00000297423 NCOA5Q9HCD5 579 aaKnown RBP17.23■□□□□ 0.35
SPIDR-201ENST00000297423 ARFGAP3Q9NP61 516 aa17.23■□□□□ 0.35
SPIDR-201ENST00000297423 SMC1AQ14683 1233 aaKnown RBP17.23■□□□□ 0.35
SPIDR-201ENST00000297423 ANKRD1Q15327 319 aa17.23■□□□□ 0.35
SPIDR-201ENST00000297423 HSP90AB4PQ58FF6 505 aa17.23■□□□□ 0.35
SPIDR-201ENST00000297423 Q6ZUG5 572 aa17.23■□□□□ 0.35
SPIDR-201ENST00000297423 NFATC2IPQ8NCF5 419 aa17.23■□□□□ 0.35
SPIDR-201ENST00000297423 ZCRB1Q8TBF4 217 aaKnown RBP17.23■□□□□ 0.35
SPIDR-201ENST00000297423 NOM1Q5C9Z4 860 aaKnown RBP17.22■□□□□ 0.35
SPIDR-201ENST00000297423 SYNE3Q6ZMZ3 975 aa17.22■□□□□ 0.35
SPIDR-201ENST00000297423 PPP1R13BQ96KQ4 1090 aa17.22■□□□□ 0.35
SPIDR-201ENST00000297423 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.22■□□□□ 0.357e-7■■■■□ 21.8
SPIDR-201ENST00000297423 FEZ2Q9UHY8 353 aaPredicted RBP17.22■□□□□ 0.35
SPIDR-201ENST00000297423 TULP1O00294 542 aaPredicted RBP17.22■□□□□ 0.35
SPIDR-201ENST00000297423 PHKG2P15735 406 aa17.22■□□□□ 0.35
SPIDR-201ENST00000297423 CASQ1P31415 396 aa17.22■□□□□ 0.35
SPIDR-201ENST00000297423 SLC39A6Q13433 755 aa17.22■□□□□ 0.35
SPIDR-201ENST00000297423 CCDC129Q6ZRS4 1044 aa17.22■□□□□ 0.35
SPIDR-201ENST00000297423 ZNF446Q9NWS9 450 aa17.22■□□□□ 0.35
SPIDR-201ENST00000297423 DCAF5Q96JK2 942 aa17.22■□□□□ 0.35
SPIDR-201ENST00000297423 SYCP1Q15431 976 aa17.21■□□□□ 0.35
SPIDR-201ENST00000297423 KLHDC4Q8TBB5 520 aa17.21■□□□□ 0.35
SPIDR-201ENST00000297423 CHPF2Q9P2E5 772 aa17.21■□□□□ 0.35
SPIDR-201ENST00000297423 WDR17Q8IZU2 1322 aa17.21■□□□□ 0.35
SPIDR-201ENST00000297423 PXDNQ92626 1479 aa17.21■□□□□ 0.35
SPIDR-201ENST00000297423 SLC27A2O14975 620 aa17.21■□□□□ 0.35
SPIDR-201ENST00000297423 SRRTQ9BXP5 876 aaKnown RBP17.21■□□□□ 0.35
SPIDR-201ENST00000297423 IL2RBP14784 551 aa17.21■□□□□ 0.35
SPIDR-201ENST00000297423 DBF4Q9UBU7 674 aaPredicted RBP17.21■□□□□ 0.35
SPIDR-201ENST00000297423 TAF6LQ9Y6J9 622 aa17.21■□□□□ 0.35
SPIDR-201ENST00000297423 USP54Q70EL1 1684 aa17.21■□□□□ 0.34
SPIDR-201ENST00000297423 HOXB7P09629 217 aa17.21■□□□□ 0.34
SPIDR-201ENST00000297423 TOP1P11387 765 aaKnown RBP17.2■□□□□ 0.34
SPIDR-201ENST00000297423 MARCKSP29966 332 aaPredicted RBP17.2■□□□□ 0.34
SPIDR-201ENST00000297423 CCDC12Q8WUD4 166 aaPredicted RBP17.2■□□□□ 0.34
SPIDR-201ENST00000297423 ZNF396Q96N95 335 aaPredicted RBP17.2■□□□□ 0.34
SPIDR-201ENST00000297423 NEUROD6Q96NK8 337 aa17.2■□□□□ 0.34
SPIDR-201ENST00000297423 CPDO75976 1380 aa17.2■□□□□ 0.34
SPIDR-201ENST00000297423 CEMIPQ8WUJ3 1361 aa17.2■□□□□ 0.34
SPIDR-201ENST00000297423 STRCQ7RTU9 1775 aa17.2■□□□□ 0.34
SPIDR-201ENST00000297423 CPLX1O14810 134 aa17.2■□□□□ 0.34
SPIDR-201ENST00000297423 SLC3A2P08195 630 aaKnown RBP17.2■□□□□ 0.34
SPIDR-201ENST00000297423 CYP2C19P33261 490 aa17.2■□□□□ 0.34
SPIDR-201ENST00000297423 SEC62Q99442 399 aaKnown RBP17.2■□□□□ 0.34
SPIDR-201ENST00000297423 BTG4Q9NY30 223 aa17.2■□□□□ 0.34
SPIDR-201ENST00000297423 NUTM2BA6NNL0 878 aaPredicted RBP17.2■□□□□ 0.34
SPIDR-201ENST00000297423 NUTM2EB1AL46 878 aaPredicted RBP17.2■□□□□ 0.34
SPIDR-201ENST00000297423 DDX58O95786 925 aaKnown RBP17.2■□□□□ 0.34
SPIDR-201ENST00000297423 UBASH3AP57075 661 aa17.2■□□□□ 0.34
SPIDR-201ENST00000297423 NUTM2AQ8IVF1 878 aaPredicted RBP17.2■□□□□ 0.34
SPIDR-201ENST00000297423 SLC52A2Q9HAB3 445 aa17.2■□□□□ 0.34
SPIDR-201ENST00000297423 NCAPD2Q15021 1401 aa17.19■□□□□ 0.34
SPIDR-201ENST00000297423 USP28Q96RU2 1077 aa17.19■□□□□ 0.34
SPIDR-201ENST00000297423 MED1Q15648 1581 aaPredicted RBP17.19■□□□□ 0.34
SPIDR-201ENST00000297423 TRPM3Q9HCF6 1732 aaPredicted RBP17.19■□□□□ 0.34
SPIDR-201ENST00000297423 MYO1CO00159 1063 aa17.19■□□□□ 0.34
SPIDR-201ENST00000297423 TOM1O60784 492 aa17.19■□□□□ 0.34
SPIDR-201ENST00000297423 ADAMTS2O95450 1211 aa17.19■□□□□ 0.34
SPIDR-201ENST00000297423 TAF7LQ5H9L4 462 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms