RNA–Protein interactions for RNA: ENST00000296051.6

HPS3-201, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS3, Length 4,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-201ENST00000296051 ZNF408Q9H9D4 720 aa15.44■□□□□ 0.06
HPS3-201ENST00000296051 NRBP1Q9UHY1 535 aa15.44■□□□□ 0.06
HPS3-201ENST00000296051 GRM8O00222 908 aa15.44■□□□□ 0.06
HPS3-201ENST00000296051 KIF5CO60282 957 aa15.44■□□□□ 0.06
HPS3-201ENST00000296051 NBPF7P0C2Y1 421 aaPredicted RBP15.44■□□□□ 0.06
HPS3-201ENST00000296051 YTHDC2Q9H6S0 1430 aaKnown RBP15.43■□□□□ 0.06
HPS3-201ENST00000296051 NF2P35240 595 aa15.43■□□□□ 0.06
HPS3-201ENST00000296051 RNF41Q9H4P4 317 aaPredicted RBP15.43■□□□□ 0.06
HPS3-201ENST00000296051 ZSCAN16Q9H4T2 348 aaPredicted RBP15.43■□□□□ 0.06
HPS3-201ENST00000296051 DACH1Q9UI36 760 aa15.43■□□□□ 0.06
HPS3-201ENST00000296051 EIF2AK4Q9P2K8 1649 aaKnown RBP15.43■□□□□ 0.06
HPS3-201ENST00000296051 A0A087WWV3 80 aa15.43■□□□□ 0.06
HPS3-201ENST00000296051 FAM182BQ5T319 152 aa15.43■□□□□ 0.06
HPS3-201ENST00000296051 OTUD7BQ6GQQ9 843 aa15.43■□□□□ 0.06
HPS3-201ENST00000296051 CCDC129Q6ZRS4 1044 aa15.43■□□□□ 0.06
HPS3-201ENST00000296051 MRPS27Q92552 414 aaKnown RBP15.43■□□□□ 0.06
HPS3-201ENST00000296051 JAK2O60674 1132 aa15.43■□□□□ 0.06
HPS3-201ENST00000296051 CYP7A1P22680 504 aa15.43■□□□□ 0.06
HPS3-201ENST00000296051 KARSQ15046 597 aaKnown RBP15.43■□□□□ 0.06
HPS3-201ENST00000296051 FAM89AQ96GI7 184 aa15.43■□□□□ 0.06
HPS3-201ENST00000296051 PLEKHF1Q96S99 279 aa15.43■□□□□ 0.06
HPS3-201ENST00000296051 DNAJC5Q9H3Z4 198 aa15.43■□□□□ 0.06
HPS3-201ENST00000296051 MAGEC2Q9UBF1 373 aaPredicted RBP15.43■□□□□ 0.06
HPS3-201ENST00000296051 GPR162Q16538 588 aa15.42■□□□□ 0.06
HPS3-201ENST00000296051 ZNHIT6Q9NWK9 470 aaKnown RBP15.42■□□□□ 0.06
HPS3-201ENST00000296051 CRACR2AQ9BSW2 395 aa15.42■□□□□ 0.06
HPS3-201ENST00000296051 KLF18A0A0U1RQI7 1052 aa15.42■□□□□ 0.06
HPS3-201ENST00000296051 ZNF75DP51815 510 aa15.42■□□□□ 0.06
HPS3-201ENST00000296051 DEF6Q9H4E7 631 aa15.42■□□□□ 0.06
HPS3-201ENST00000296051 NCOA5Q9HCD5 579 aaKnown RBP15.42■□□□□ 0.06
HPS3-201ENST00000296051 ABCC4O15439 1325 aa15.42■□□□□ 0.06
HPS3-201ENST00000296051 CHL1O00533 1208 aa15.41■□□□□ 0.06
HPS3-201ENST00000296051 RNMTO43148 476 aaKnown RBP15.41■□□□□ 0.06
HPS3-201ENST00000296051 CAVIN2O95810 425 aa15.41■□□□□ 0.06
HPS3-201ENST00000296051 SYKP43405 635 aa15.41■□□□□ 0.06
HPS3-201ENST00000296051 TNIP1Q15025 636 aa15.41■□□□□ 0.06
HPS3-201ENST00000296051 TTF1Q15361 905 aaPredicted RBP15.41■□□□□ 0.06
HPS3-201ENST00000296051 RASEFQ8IZ41 740 aa15.41■□□□□ 0.06
HPS3-201ENST00000296051 TANGO6Q9C0B7 1094 aa15.41■□□□□ 0.06
HPS3-201ENST00000296051 ARFGAP3Q9NP61 516 aa15.41■□□□□ 0.06
HPS3-201ENST00000296051 SYCP1Q15431 976 aa15.41■□□□□ 0.06
HPS3-201ENST00000296051 SLC12A7Q9Y666 1083 aa15.41■□□□□ 0.06
HPS3-201ENST00000296051 CCDC181Q5TID7 509 aa15.41■□□□□ 0.06
HPS3-201ENST00000296051 KIAA1328Q86T90 577 aa15.41■□□□□ 0.06
HPS3-201ENST00000296051 EDC3Q96F86 508 aaKnown RBP15.41■□□□□ 0.06
HPS3-201ENST00000296051 TMEM94Q12767 1356 aa15.41■□□□□ 0.06
HPS3-201ENST00000296051 CCDC196A0A1B0GTZ2 297 aa15.41■□□□□ 0.06
HPS3-201ENST00000296051 KIF20AO95235 890 aa15.41■□□□□ 0.06
HPS3-201ENST00000296051 A1BGP04217 495 aa15.41■□□□□ 0.06
HPS3-201ENST00000296051 PDE4BQ07343 736 aa15.41■□□□□ 0.06
HPS3-201ENST00000296051 MSL1Q68DK7 614 aa15.41■□□□□ 0.06
HPS3-201ENST00000296051 C10orf67Q8IYJ2 551 aa15.41■□□□□ 0.06
HPS3-201ENST00000296051 TMEM2Q9UHN6 1383 aa15.4■□□□□ 0.06
HPS3-201ENST00000296051 UQCRFS1P1P0C7P4 283 aa15.4■□□□□ 0.06
HPS3-201ENST00000296051 HSPA4P34932 840 aa15.4■□□□□ 0.06
HPS3-201ENST00000296051 EIF5P55010 431 aaKnown RBP15.4■□□□□ 0.06
HPS3-201ENST00000296051 CUL5Q93034 780 aa15.4■□□□□ 0.06
HPS3-201ENST00000296051 ZNF215Q9UL58 517 aaPredicted RBP15.4■□□□□ 0.06
HPS3-201ENST00000296051 ME3Q16798 604 aa15.4■□□□□ 0.06
HPS3-201ENST00000296051 LINS1Q8NG48 757 aa15.4■□□□□ 0.06
HPS3-201ENST00000296051 LEO1Q8WVC0 666 aaPredicted RBP15.4■□□□□ 0.06
HPS3-201ENST00000296051 HMGB1P09429 215 aaKnown RBP15.4■□□□□ 0.06
HPS3-201ENST00000296051 RXRAP19793 462 aa15.4■□□□□ 0.06
HPS3-201ENST00000296051 TTC6Q86TZ1 520 aa15.4■□□□□ 0.06
HPS3-201ENST00000296051 CCDC150Q8NCX0 1101 aa15.4■□□□□ 0.06
HPS3-201ENST00000296051 CRNKL1Q9BZJ0 848 aaKnown RBP15.4■□□□□ 0.06
HPS3-201ENST00000296051 RAD50Q92878 1312 aa15.4■□□□□ 0.06
HPS3-201ENST00000296051 SHANK2Q9UPX8 1470 aa15.4■□□□□ 0.06
HPS3-201ENST00000296051 DNAJC10Q8IXB1 793 aa15.4■□□□□ 0.06
HPS3-201ENST00000296051 WASF1Q92558 559 aa15.4■□□□□ 0.06
HPS3-201ENST00000296051 PUF60Q9UHX1 559 aaKnown RBP15.4■□□□□ 0.06
HPS3-201ENST00000296051 RTL1A6NKG5 1358 aa15.39■□□□□ 0.05
HPS3-201ENST00000296051 PTPDC1A2A3K4 754 aa15.39■□□□□ 0.05
HPS3-201ENST00000296051 RDXP35241 583 aaKnown RBP15.39■□□□□ 0.05
HPS3-201ENST00000296051 SAMD9Q5K651 1589 aa15.39■□□□□ 0.05
HPS3-201ENST00000296051 NAA16Q6N069 864 aaPredicted RBP15.39■□□□□ 0.05
HPS3-201ENST00000296051 LZTFL1Q9NQ48 299 aa15.39■□□□□ 0.05
HPS3-201ENST00000296051 YEATS2Q9ULM3 1422 aa15.39■□□□□ 0.05
HPS3-201ENST00000296051 PTH1RQ03431 593 aa15.39■□□□□ 0.05
HPS3-201ENST00000296051 IPO4Q8TEX9 1081 aaKnown RBP15.39■□□□□ 0.05
HPS3-201ENST00000296051 HMG20BQ9P0W2 317 aa15.39■□□□□ 0.05
HPS3-201ENST00000296051 TARBP1Q13395 1621 aaKnown RBP15.39■□□□□ 0.05
HPS3-201ENST00000296051 ZNF790Q6PG37 636 aa15.39■□□□□ 0.05
HPS3-201ENST00000296051 ZNF804AQ7Z570 1209 aa15.38■□□□□ 0.05
HPS3-201ENST00000296051 TMEM87AQ8NBN3 555 aa15.38■□□□□ 0.05
HPS3-201ENST00000296051 VTI1AQ96AJ9 217 aa15.38■□□□□ 0.05
HPS3-201ENST00000296051 NUP88Q99567 741 aaPredicted RBP15.38■□□□□ 0.05
HPS3-201ENST00000296051 RSPH14Q9UHP6 348 aa15.38■□□□□ 0.05
HPS3-201ENST00000296051 TRPM2O94759 1503 aa15.38■□□□□ 0.05
HPS3-201ENST00000296051 KIAA0754O94854 1291 aa15.38■□□□□ 0.05
HPS3-201ENST00000296051 CCDC102BQ68D86 513 aa15.38■□□□□ 0.05
HPS3-201ENST00000296051 CATIPQ7Z7H3 387 aa15.38■□□□□ 0.05
HPS3-201ENST00000296051 NR1I2O75469 434 aa15.38■□□□□ 0.05
HPS3-201ENST00000296051 EYA3Q99504 573 aa15.38■□□□□ 0.05
HPS3-201ENST00000296051 STIM1Q13586 685 aa15.38■□□□□ 0.05
HPS3-201ENST00000296051 GPATCH11Q8N954 259 aa15.38■□□□□ 0.05
HPS3-201ENST00000296051 LGR6Q9HBX8 967 aa15.38■□□□□ 0.05
HPS3-201ENST00000296051 MTMR6Q9Y217 621 aa15.38■□□□□ 0.05
HPS3-201ENST00000296051 AFMP43652 599 aa15.37■□□□□ 0.05
HPS3-201ENST00000296051 ENOX2Q16206 610 aaKnown RBP15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms