RNA–Protein interactions for RNA: ENST00000295701.9

CNOT9-202, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

TSL 1 (best) BASIC

Gene CNOT9, Length 1,126 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-202ENST00000295701 DUOX1Q9NRD9 1551 aa12.13□□□□□ -0.47
CNOT9-202ENST00000295701 SH3TC1Q8TE82 1336 aa12.13□□□□□ -0.47
CNOT9-202ENST00000295701 CELF1Q92879 486 aaKnown RBP12.13□□□□□ -0.47
CNOT9-202ENST00000295701 BCL2L13Q9BXK5 485 aa12.13□□□□□ -0.47
CNOT9-202ENST00000295701 KCNQ5Q9NR82 932 aa12.13□□□□□ -0.47
CNOT9-202ENST00000295701 CNOT7Q9UIV1 285 aaKnown RBP12.13□□□□□ -0.47
CNOT9-202ENST00000295701 LMOD3Q0VAK6 560 aa12.12□□□□□ -0.47
CNOT9-202ENST00000295701 SAPCD2Q86UD0 394 aa12.12□□□□□ -0.47
CNOT9-202ENST00000295701 ABHD8Q96I13 439 aa12.12□□□□□ -0.47
CNOT9-202ENST00000295701 ISCA1Q9BUE6 129 aa12.12□□□□□ -0.47
CNOT9-202ENST00000295701 ZNF408Q9H9D4 720 aa12.12□□□□□ -0.47
CNOT9-202ENST00000295701 PGAP2Q9UHJ9 254 aa12.12□□□□□ -0.47
CNOT9-202ENST00000295701 THSD7BQ9C0I4 1608 aa12.11□□□□□ -0.47
CNOT9-202ENST00000295701 EGFRP00533 1210 aa12.11□□□□□ -0.47
CNOT9-202ENST00000295701 ECE1P42892 770 aa12.11□□□□□ -0.47
CNOT9-202ENST00000295701 GPSM2P81274 684 aa12.11□□□□□ -0.47
CNOT9-202ENST00000295701 HDGFL1Q5TGJ6 251 aa12.11□□□□□ -0.47
CNOT9-202ENST00000295701 ANKRD13DQ6ZTN6 518 aa12.11□□□□□ -0.47
CNOT9-202ENST00000295701 USP48Q86UV5 1035 aa12.11□□□□□ -0.47
CNOT9-202ENST00000295701 PLBD2Q8NHP8 589 aa12.11□□□□□ -0.47
CNOT9-202ENST00000295701 PTCD2Q8WV60 388 aaKnown RBP12.11□□□□□ -0.47
CNOT9-202ENST00000295701 RUNDC1Q96C34 613 aa12.11□□□□□ -0.47
CNOT9-202ENST00000295701 ZIC5Q96T25 663 aa12.11□□□□□ -0.47
CNOT9-202ENST00000295701 DBNDD1Q9H9R9 158 aa12.11□□□□□ -0.47
CNOT9-202ENST00000295701 POLLQ9UGP5 575 aa12.11□□□□□ -0.47
CNOT9-202ENST00000295701 ADAMTS8Q9UP79 889 aa12.11□□□□□ -0.47
CNOT9-202ENST00000295701 LHX6Q9UPM6 363 aa12.11□□□□□ -0.47
CNOT9-202ENST00000295701 PSMD14O00487 310 aa12.1□□□□□ -0.47
CNOT9-202ENST00000295701 TNIP1Q15025 636 aa12.1□□□□□ -0.47
CNOT9-202ENST00000295701 SAMD7Q7Z3H4 446 aa12.1□□□□□ -0.47
CNOT9-202ENST00000295701 JARID2Q92833 1246 aaPredicted RBP12.1□□□□□ -0.47
CNOT9-202ENST00000295701 CRISPLD2Q9H0B8 497 aa12.1□□□□□ -0.47
CNOT9-202ENST00000295701 NSFL1CQ9UNZ2 370 aaKnown RBP12.1□□□□□ -0.47
CNOT9-202ENST00000295701 LRRC37AA6NMS7 1700 aa12.1□□□□□ -0.47
CNOT9-202ENST00000295701 SCN9AQ15858 1988 aa12.1□□□□□ -0.47
CNOT9-202ENST00000295701 MYBBP1AQ9BQG0 1328 aaKnown RBP12.1□□□□□ -0.47
CNOT9-202ENST00000295701 C6orf229H3BNL8 230 aa12.09□□□□□ -0.47
CNOT9-202ENST00000295701 SF3B3Q15393 1217 aaKnown RBP12.09□□□□□ -0.47
CNOT9-202ENST00000295701 WASHC4Q2M389 1173 aa12.09□□□□□ -0.47
CNOT9-202ENST00000295701 TBC1D10BQ4KMP7 808 aaPredicted RBP12.09□□□□□ -0.47
CNOT9-202ENST00000295701 RBM26Q5T8P6 1007 aaKnown RBP12.09□□□□□ -0.47
CNOT9-202ENST00000295701 DUSP27Q5VZP5 1158 aa12.09□□□□□ -0.47
CNOT9-202ENST00000295701 H7C1D1 291 aa12.08□□□□□ -0.48
CNOT9-202ENST00000295701 ELL2O00472 640 aaPredicted RBP12.08□□□□□ -0.48
CNOT9-202ENST00000295701 IRS4O14654 1257 aaPredicted RBP12.08□□□□□ -0.48
CNOT9-202ENST00000295701 MAP2K2P36507 400 aa12.08□□□□□ -0.48
CNOT9-202ENST00000295701 WDR43Q15061 677 aaKnown RBP eCLIP12.08□□□□□ -0.48
CNOT9-202ENST00000295701 CDC37L1Q7L3B6 337 aa12.08□□□□□ -0.48
CNOT9-202ENST00000295701 BEGAINQ9BUH8 593 aa12.08□□□□□ -0.48
CNOT9-202ENST00000295701 PHAXQ9H814 394 aaKnown RBP12.08□□□□□ -0.48
CNOT9-202ENST00000295701 SEC31BQ9NQW1 1179 aa12.08□□□□□ -0.48
CNOT9-202ENST00000295701 MBIPQ9NS73 344 aa12.08□□□□□ -0.48
CNOT9-202ENST00000295701 DBF4Q9UBU7 674 aaPredicted RBP12.08□□□□□ -0.48
CNOT9-202ENST00000295701 RTL9Q8NET4 1388 aa12.07□□□□□ -0.48
CNOT9-202ENST00000295701 CCDC85CA6NKD9 419 aa12.07□□□□□ -0.48
CNOT9-202ENST00000295701 ECE2O60344 883 aa12.07□□□□□ -0.48
CNOT9-202ENST00000295701 ZC3H15Q8WU90 426 aaKnown RBP12.07□□□□□ -0.48
CNOT9-202ENST00000295701 CFAP44Q96MT7 982 aa12.07□□□□□ -0.48
CNOT9-202ENST00000295701 ASTN2O75129 1339 aaPredicted RBP12.07□□□□□ -0.48
CNOT9-202ENST00000295701 CDHR2Q9BYE9 1310 aa12.07□□□□□ -0.48
CNOT9-202ENST00000295701 ADM5C9JUS6 153 aa12.06□□□□□ -0.48
CNOT9-202ENST00000295701 RPS8P62241 208 aaKnown RBP12.06□□□□□ -0.48
CNOT9-202ENST00000295701 FAM161AQ3B820 660 aa12.06□□□□□ -0.48
CNOT9-202ENST00000295701 TMC4Q7Z404 712 aa12.06□□□□□ -0.48
CNOT9-202ENST00000295701 TBC1D16Q8TBP0 767 aa12.06□□□□□ -0.48
CNOT9-202ENST00000295701 CCDC85AQ96PX6 553 aaPredicted RBP12.06□□□□□ -0.48
CNOT9-202ENST00000295701 HYPKQ9NX55 129 aa12.06□□□□□ -0.48
CNOT9-202ENST00000295701 TBC1D12O60347 775 aa12.05□□□□□ -0.48
CNOT9-202ENST00000295701 HOXB7P09629 217 aa12.05□□□□□ -0.48
CNOT9-202ENST00000295701 ZNF853P0CG23 659 aa12.05□□□□□ -0.48
CNOT9-202ENST00000295701 PDE4AP27815 886 aa12.05□□□□□ -0.48
CNOT9-202ENST00000295701 HUNKP57058 714 aa12.05□□□□□ -0.48
CNOT9-202ENST00000295701 TRIM28Q13263 835 aaKnown RBP12.05□□□□□ -0.48
CNOT9-202ENST00000295701 RIC3Q7Z5B4 369 aa12.05□□□□□ -0.48
CNOT9-202ENST00000295701 DPF2Q92785 391 aa12.05□□□□□ -0.48
CNOT9-202ENST00000295701 MYD88Q99836 296 aa12.05□□□□□ -0.48
CNOT9-202ENST00000295701 WTIPA6NIX2 430 aaPredicted RBP12.04□□□□□ -0.48
CNOT9-202ENST00000295701 APAF1O14727 1248 aa12.04□□□□□ -0.48
CNOT9-202ENST00000295701 KRT26Q7Z3Y9 468 aa12.04□□□□□ -0.48
CNOT9-202ENST00000295701 ZBTB38Q8NAP3 1195 aaPredicted RBP12.04□□□□□ -0.48
CNOT9-202ENST00000295701 C8orf58Q8NAV2 365 aa12.04□□□□□ -0.48
CNOT9-202ENST00000295701 HHIPL1Q96JK4 782 aa12.04□□□□□ -0.48
CNOT9-202ENST00000295701 MCOLN1Q9GZU1 580 aa12.04□□□□□ -0.48
CNOT9-202ENST00000295701 FAM155AB1AL88 458 aaPredicted RBP12.03□□□□□ -0.48
CNOT9-202ENST00000295701 UFL1O94874 794 aa12.03□□□□□ -0.48
CNOT9-202ENST00000295701 VIL1P09327 827 aaKnown RBP12.03□□□□□ -0.48
CNOT9-202ENST00000295701 BRPF1P55201 1214 aaPredicted RBP12.03□□□□□ -0.48
CNOT9-202ENST00000295701 PPP1R15BQ5SWA1 713 aa12.03□□□□□ -0.48
CNOT9-202ENST00000295701 ZC3H12CQ9C0D7 883 aaKnown RBP12.03□□□□□ -0.48
CNOT9-202ENST00000295701 AKAP11Q9UKA4 1901 aa12.02□□□□□ -0.49
CNOT9-202ENST00000295701 RGMBQ6NW40 437 aa12.02□□□□□ -0.49
CNOT9-202ENST00000295701 EYA3Q99504 573 aa12.02□□□□□ -0.49
CNOT9-202ENST00000295701 GBA2Q9HCG7 927 aaPredicted RBP12.02□□□□□ -0.49
CNOT9-202ENST00000295701 PODXL2Q9NZ53 605 aa12.02□□□□□ -0.49
CNOT9-202ENST00000295701 ANKIB1Q9P2G1 1089 aa12.02□□□□□ -0.49
CNOT9-202ENST00000295701 SCAF8Q9UPN6 1271 aaKnown RBP12.02□□□□□ -0.49
CNOT9-202ENST00000295701 SPEF2Q9C093 1822 aa12.02□□□□□ -0.49
CNOT9-202ENST00000295701 PDE8AO60658 829 aa12.01□□□□□ -0.49
CNOT9-202ENST00000295701 RPS12P25398 132 aaKnown RBP12.01□□□□□ -0.49
CNOT9-202ENST00000295701 PBX2P40425 430 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms