RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 GOLGA1Q92805 767 aa11.23□□□□□ -0.61
COL6A3-201ENST00000295550 SLC12A7Q9Y666 1083 aa11.23□□□□□ -0.61
COL6A3-201ENST00000295550 IFI16Q16666 785 aaKnown RBP11.22□□□□□ -0.61
COL6A3-201ENST00000295550 OTUD6BQ8N6M0 293 aa11.22□□□□□ -0.61
COL6A3-201ENST00000295550 FERMT2Q96AC1 680 aa11.22□□□□□ -0.61
COL6A3-201ENST00000295550 ZFYP08048 801 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-201ENST00000295550 IGHMBP2P38935 993 aaKnown RBP11.22□□□□□ -0.61
COL6A3-201ENST00000295550 RAB3IL1Q8TBN0 382 aa11.22□□□□□ -0.61
COL6A3-201ENST00000295550 KIF5BP33176 963 aa11.22□□□□□ -0.61
COL6A3-201ENST00000295550 IL13P35225 146 aa11.22□□□□□ -0.61
COL6A3-201ENST00000295550 NOLC1Q14978 699 aaKnown RBP eCLIP11.22□□□□□ -0.61
COL6A3-201ENST00000295550 FAM135BQ49AJ0 1406 aa11.22□□□□□ -0.61
COL6A3-201ENST00000295550 CCDC114Q96M63 670 aa11.22□□□□□ -0.61
COL6A3-201ENST00000295550 BABAM1Q9NWV8 329 aa11.22□□□□□ -0.61
COL6A3-201ENST00000295550 A0A087WZG4 1122 aa11.22□□□□□ -0.61
COL6A3-201ENST00000295550 ZGPATQ8N5A5 531 aaKnown RBP11.22□□□□□ -0.61
COL6A3-201ENST00000295550 KIAA0753Q2KHM9 967 aa11.22□□□□□ -0.61
COL6A3-201ENST00000295550 ANO6Q4KMQ2 910 aa11.22□□□□□ -0.61
COL6A3-201ENST00000295550 MYO1BO43795 1136 aa11.22□□□□□ -0.61
COL6A3-201ENST00000295550 GIMAP6Q6P9H5 292 aa11.22□□□□□ -0.61
COL6A3-201ENST00000295550 DRC1Q96MC2 740 aa11.22□□□□□ -0.61
COL6A3-201ENST00000295550 FERMT1Q9BQL6 677 aa11.22□□□□□ -0.61
COL6A3-201ENST00000295550 LRP2BPQ9P2M1 347 aa11.22□□□□□ -0.61
COL6A3-201ENST00000295550 PPM1FP49593 454 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-201ENST00000295550 SARNPP82979 210 aaKnown RBP11.22□□□□□ -0.61
COL6A3-201ENST00000295550 CCDC129Q6ZRS4 1044 aa11.22□□□□□ -0.61
COL6A3-201ENST00000295550 UBE3BQ7Z3V4 1068 aa11.22□□□□□ -0.61
COL6A3-201ENST00000295550 RPUSD2Q8IZ73 545 aaKnown RBP11.22□□□□□ -0.61
COL6A3-201ENST00000295550 CWC25Q9NXE8 425 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-201ENST00000295550 PABPN1LA6NDY0 278 aaKnown RBP11.21□□□□□ -0.61
COL6A3-201ENST00000295550 CCDC40Q4G0X9 1142 aa11.21□□□□□ -0.61
COL6A3-201ENST00000295550 NAPBQ9H115 298 aa11.21□□□□□ -0.61
COL6A3-201ENST00000295550 RNF41Q9H4P4 317 aaPredicted RBP11.21□□□□□ -0.61
COL6A3-201ENST00000295550 VPS18Q9P253 973 aa11.21□□□□□ -0.61
COL6A3-201ENST00000295550 PSMC4P43686 418 aa11.21□□□□□ -0.61
COL6A3-201ENST00000295550 C16orf71Q8IYS4 520 aaPredicted RBP11.21□□□□□ -0.61
COL6A3-201ENST00000295550 MTHFSDQ2M296 383 aaKnown RBP11.21□□□□□ -0.62
COL6A3-201ENST00000295550 RASSF4Q9H2L5 321 aa11.21□□□□□ -0.62
COL6A3-201ENST00000295550 TMOD3Q9NYL9 352 aa11.21□□□□□ -0.62
COL6A3-201ENST00000295550 RBM8AQ9Y5S9 174 aaKnown RBP11.21□□□□□ -0.62
COL6A3-201ENST00000295550 GOLIM4O00461 696 aa11.21□□□□□ -0.62
COL6A3-201ENST00000295550 SSRP1Q08945 709 aaKnown RBP11.21□□□□□ -0.62
COL6A3-201ENST00000295550 KCNG4Q8TDN1 519 aa11.21□□□□□ -0.62
COL6A3-201ENST00000295550 LARP6Q9BRS8 491 aaKnown RBP11.21□□□□□ -0.62
COL6A3-201ENST00000295550 KSR2Q6VAB6 950 aa11.21□□□□□ -0.62
COL6A3-201ENST00000295550 ACTN2P35609 894 aa11.21□□□□□ -0.62
COL6A3-201ENST00000295550 ZNF445P59923 1031 aa11.21□□□□□ -0.62
COL6A3-201ENST00000295550 STIM2Q9P246 746 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 PLVAPQ9BX97 442 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 GRM8O00222 908 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 PLA2R1Q13018 1463 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 CDK12Q9NYV4 1490 aaPredicted RBP11.2□□□□□ -0.62
COL6A3-201ENST00000295550 TUBB4AP04350 444 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 SLC5A1P13866 664 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 MAP3K12Q12852 859 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 RUFY3Q7L099 469 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 CTAGE15A4D2H0 777 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 CTAGE8P0CG41 777 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 AK2P54819 239 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 CTAGE6Q86UF2 777 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 CTAGE4Q8IX94 777 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 CCT2P78371 535 aaKnown RBP11.2□□□□□ -0.62
COL6A3-201ENST00000295550 LACTBP83111 547 aaPredicted RBP11.2□□□□□ -0.62
COL6A3-201ENST00000295550 TYRO3Q06418 890 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 C10orf67Q8IYJ2 551 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 NCOA7Q8NI08 942 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 TBC1D5Q92609 795 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 NPHP3Q7Z494 1330 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 ZNF213O14771 459 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 SKILP12757 684 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 PIP4K2BP78356 416 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 DNM1Q05193 864 aaKnown RBP11.2□□□□□ -0.62
COL6A3-201ENST00000295550 AKAP4Q5JQC9 854 aa11.2□□□□□ -0.62
COL6A3-201ENST00000295550 SNRPA1P09661 255 aaKnown RBP11.19□□□□□ -0.62
COL6A3-201ENST00000295550 NMIQ13287 307 aaPredicted RBP11.19□□□□□ -0.62
COL6A3-201ENST00000295550 ZEB2O60315 1214 aa11.19□□□□□ -0.62
COL6A3-201ENST00000295550 SELENOOQ9BVL4 669 aa11.19□□□□□ -0.62
COL6A3-201ENST00000295550 PLCD3Q8N3E9 789 aa11.19□□□□□ -0.62
COL6A3-201ENST00000295550 SELENOSQ9BQE4 189 aa11.19□□□□□ -0.62
COL6A3-201ENST00000295550 ZNF287Q9HBT7 754 aa11.19□□□□□ -0.62
COL6A3-201ENST00000295550 SAMD15Q9P1V8 674 aa11.19□□□□□ -0.62
COL6A3-201ENST00000295550 TSPOAP1O95153 1857 aa11.19□□□□□ -0.62
COL6A3-201ENST00000295550 ANKRD24Q8TF21 1146 aa11.19□□□□□ -0.62
COL6A3-201ENST00000295550 ZC3H13Q5T200 1668 aaKnown RBP11.19□□□□□ -0.62
COL6A3-201ENST00000295550 A0A1B0GUL7 405 aa11.19□□□□□ -0.62
COL6A3-201ENST00000295550 MAP7D1Q3KQU3 841 aa11.19□□□□□ -0.62
COL6A3-201ENST00000295550 MRPS27Q92552 414 aaKnown RBP11.19□□□□□ -0.62
COL6A3-201ENST00000295550 PYM1Q9BRP8 204 aaKnown RBP11.19□□□□□ -0.62
COL6A3-201ENST00000295550 GOLGA8AA7E2F4 631 aa11.19□□□□□ -0.62
COL6A3-201ENST00000295550 KIF20AO95235 890 aa11.19□□□□□ -0.62
COL6A3-201ENST00000295550 TPD52P55327 224 aaPredicted RBP11.19□□□□□ -0.62
COL6A3-201ENST00000295550 ZC3H6P61129 1189 aaKnown RBP11.19□□□□□ -0.62
COL6A3-201ENST00000295550 FAM76AQ8TAV0 307 aa11.19□□□□□ -0.62
COL6A3-201ENST00000295550 ABCC3O15438 1527 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 SSX2IPQ9Y2D8 614 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 A0A1B0GUA9 196 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 MRPS9P82933 396 aaKnown RBP11.18□□□□□ -0.62
COL6A3-201ENST00000295550 DNAJC21Q5F1R6 531 aaKnown RBP11.18□□□□□ -0.62
COL6A3-201ENST00000295550 NBPF11Q86T75 865 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 PUF60Q9UHX1 559 aaKnown RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms