RNA–Protein interactions for RNA: ENST00000294816.6

LMX1A-201, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LMX1A, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-201ENST00000294816 RAB11FIP4Q86YS3 637 aa11.91□□□□□ -0.5
LMX1A-201ENST00000294816 ESF1Q9H501 851 aaKnown RBP11.91□□□□□ -0.5
LMX1A-201ENST00000294816 RSPH14Q9UHP6 348 aa11.91□□□□□ -0.5
LMX1A-201ENST00000294816 PEAK1Q9H792 1746 aa11.91□□□□□ -0.5
LMX1A-201ENST00000294816 USP6P35125 1406 aa11.9□□□□□ -0.5
LMX1A-201ENST00000294816 BTBD11A6QL63 1104 aa11.9□□□□□ -0.5
LMX1A-201ENST00000294816 ZSCAN26Q16670 478 aa11.9□□□□□ -0.5
LMX1A-201ENST00000294816 CCP110O43303 1012 aa11.9□□□□□ -0.5
LMX1A-201ENST00000294816 UBASH3AP57075 661 aa11.9□□□□□ -0.5
LMX1A-201ENST00000294816 NAA16Q6N069 864 aaPredicted RBP11.9□□□□□ -0.5
LMX1A-201ENST00000294816 MPRIPQ6WCQ1 1025 aa11.9□□□□□ -0.5
LMX1A-201ENST00000294816 A2ML1A8K2U0 1454 aa11.9□□□□□ -0.5
LMX1A-201ENST00000294816 TRIM66O15016 1216 aa11.9□□□□□ -0.51
LMX1A-201ENST00000294816 TADA3O75528 432 aa11.9□□□□□ -0.51
LMX1A-201ENST00000294816 ZRANB2O95218 330 aaKnown RBP eCLIP11.9□□□□□ -0.51
LMX1A-201ENST00000294816 RASSF4Q9H2L5 321 aa11.9□□□□□ -0.51
LMX1A-201ENST00000294816 HDAC5Q9UQL6 1122 aa11.9□□□□□ -0.51
LMX1A-201ENST00000294816 U3KPZ7 1027 aaPredicted RBP11.9□□□□□ -0.51
LMX1A-201ENST00000294816 KDRP35968 1356 aa11.89□□□□□ -0.51
LMX1A-201ENST00000294816 SASH3O75995 380 aa11.89□□□□□ -0.51
LMX1A-201ENST00000294816 CASQ1P31415 396 aa11.89□□□□□ -0.51
LMX1A-201ENST00000294816 FMR1NBQ8N0W7 255 aaPredicted RBP11.89□□□□□ -0.51
LMX1A-201ENST00000294816 ARFGAP3Q9NP61 516 aa11.89□□□□□ -0.51
LMX1A-201ENST00000294816 CLIC4Q9Y696 253 aa11.89□□□□□ -0.51
LMX1A-201ENST00000294816 C3P01024 1663 aa11.89□□□□□ -0.51
LMX1A-201ENST00000294816 FAM208AQ9UK61 1670 aaKnown RBP11.89□□□□□ -0.51
LMX1A-201ENST00000294816 ROBO2Q9HCK4 1378 aa11.89□□□□□ -0.51
LMX1A-201ENST00000294816 MED23Q9ULK4 1368 aa11.89□□□□□ -0.51
LMX1A-201ENST00000294816 PLEKHG3A1L390 1219 aa11.89□□□□□ -0.51
LMX1A-201ENST00000294816 GRM8O00222 908 aa11.89□□□□□ -0.51
LMX1A-201ENST00000294816 HOXC9P31274 260 aa11.89□□□□□ -0.51
LMX1A-201ENST00000294816 LRRFIP1Q32MZ4 808 aaKnown RBP11.89□□□□□ -0.51
LMX1A-201ENST00000294816 AK7Q96M32 723 aa11.89□□□□□ -0.51
LMX1A-201ENST00000294816 ALDH8A1Q9H2A2 487 aaPredicted RBP11.89□□□□□ -0.51
LMX1A-201ENST00000294816 DBF4Q9UBU7 674 aaPredicted RBP11.89□□□□□ -0.51
LMX1A-201ENST00000294816 ITSN1Q15811 1721 aa11.89□□□□□ -0.51
LMX1A-201ENST00000294816 MON2Q7Z3U7 1717 aa11.89□□□□□ -0.51
LMX1A-201ENST00000294816 PFKFB2O60825 505 aa11.88□□□□□ -0.51
LMX1A-201ENST00000294816 TOP1P11387 765 aaKnown RBP11.88□□□□□ -0.51
LMX1A-201ENST00000294816 MTX1Q13505 466 aa11.88□□□□□ -0.51
LMX1A-201ENST00000294816 CTDNEP1O95476 244 aa11.88□□□□□ -0.51
LMX1A-201ENST00000294816 MARCKSP29966 332 aaPredicted RBP11.88□□□□□ -0.51
LMX1A-201ENST00000294816 STOX1Q6ZVD7 989 aa11.88□□□□□ -0.51
LMX1A-201ENST00000294816 DPF2Q92785 391 aa11.88□□□□□ -0.51
LMX1A-201ENST00000294816 SLC26A8Q96RN1 970 aa11.88□□□□□ -0.51
LMX1A-201ENST00000294816 CWC15Q9P013 229 aaKnown RBP11.88□□□□□ -0.51
LMX1A-201ENST00000294816 PHLPP2Q6ZVD8 1323 aa11.88□□□□□ -0.51
LMX1A-201ENST00000294816 PRAMEF22A3QJZ6 481 aa11.88□□□□□ -0.51
LMX1A-201ENST00000294816 EFCAB8A8MWE9 144 aa11.88□□□□□ -0.51
LMX1A-201ENST00000294816 ALDH1L1O75891 902 aa11.88□□□□□ -0.51
LMX1A-201ENST00000294816 TPM1P09493 284 aa11.88□□□□□ -0.51
LMX1A-201ENST00000294816 CC2D1AQ6P1N0 951 aaPredicted RBP11.88□□□□□ -0.51
LMX1A-201ENST00000294816 KSR2Q6VAB6 950 aa11.88□□□□□ -0.51
LMX1A-201ENST00000294816 SYNE3Q6ZMZ3 975 aa11.88□□□□□ -0.51
LMX1A-201ENST00000294816 SMARCC2Q8TAQ2 1214 aa11.88□□□□□ -0.51
LMX1A-201ENST00000294816 ZNF202O95125 648 aa11.87□□□□□ -0.51
LMX1A-201ENST00000294816 TBC1D8O95759 1140 aa11.87□□□□□ -0.51
LMX1A-201ENST00000294816 PPP2R3AQ06190 1150 aa11.87□□□□□ -0.51
LMX1A-201ENST00000294816 KARSQ15046 597 aaKnown RBP11.87□□□□□ -0.51
LMX1A-201ENST00000294816 CCDC158Q5M9N0 1113 aa11.87□□□□□ -0.51
LMX1A-201ENST00000294816 DHX32Q7L7V1 743 aaKnown RBP11.87□□□□□ -0.51
LMX1A-201ENST00000294816 RIC3Q7Z5B4 369 aa11.87□□□□□ -0.51
LMX1A-201ENST00000294816 LLPHQ9BRT6 129 aaKnown RBP11.87□□□□□ -0.51
LMX1A-201ENST00000294816 SRRTQ9BXP5 876 aaKnown RBP11.87□□□□□ -0.51
LMX1A-201ENST00000294816 KCND1Q9NSA2 647 aa11.87□□□□□ -0.51
LMX1A-201ENST00000294816 LCMT1Q9UIC8 334 aa11.87□□□□□ -0.51
LMX1A-201ENST00000294816 USP31Q70CQ4 1352 aa11.87□□□□□ -0.51
LMX1A-201ENST00000294816 HDGFP51858 240 aaKnown RBP11.87□□□□□ -0.51
LMX1A-201ENST00000294816 NLRP12P59046 1061 aa11.87□□□□□ -0.51
LMX1A-201ENST00000294816 MCM6Q14566 821 aa11.87□□□□□ -0.51
LMX1A-201ENST00000294816 ADALQ6DHV7 355 aa11.87□□□□□ -0.51
LMX1A-201ENST00000294816 ZNF530Q6P9A1 599 aaPredicted RBP11.87□□□□□ -0.51
LMX1A-201ENST00000294816 GJB4Q9NTQ9 266 aa11.87□□□□□ -0.51
LMX1A-201ENST00000294816 TMEM232C9JQI7 657 aa11.87□□□□□ -0.51
LMX1A-201ENST00000294816 SPTLC2O15270 562 aa11.87□□□□□ -0.51
LMX1A-201ENST00000294816 ZSCAN12O43309 604 aa11.87□□□□□ -0.51
LMX1A-201ENST00000294816 SLC20A2Q08357 652 aa11.87□□□□□ -0.51
LMX1A-201ENST00000294816 MCMDC2Q4G0Z9 681 aa11.87□□□□□ -0.51
LMX1A-201ENST00000294816 MYO1CO00159 1063 aa11.86□□□□□ -0.51
LMX1A-201ENST00000294816 TUBB4AP04350 444 aa11.86□□□□□ -0.51
LMX1A-201ENST00000294816 TSGA10IPQ3SY00 556 aa11.86□□□□□ -0.51
LMX1A-201ENST00000294816 TRIM65Q6PJ69 517 aa11.86□□□□□ -0.51
LMX1A-201ENST00000294816 C8orf76Q96K31 380 aa11.86□□□□□ -0.51
LMX1A-201ENST00000294816 PARP3Q9Y6F1 533 aa11.86□□□□□ -0.51
LMX1A-201ENST00000294816 A0A0G2JLW4 131 aa11.86□□□□□ -0.51
LMX1A-201ENST00000294816 ILDR1Q86SU0 546 aaPredicted RBP11.86□□□□□ -0.51
LMX1A-201ENST00000294816 ABTB2Q8N961 1025 aa11.86□□□□□ -0.51
LMX1A-201ENST00000294816 WDR24Q96S15 920 aa11.86□□□□□ -0.51
LMX1A-201ENST00000294816 PARD6BQ9BYG5 372 aa11.86□□□□□ -0.51
LMX1A-201ENST00000294816 BABAM1Q9NWV8 329 aa11.86□□□□□ -0.51
LMX1A-201ENST00000294816 COL15A1P39059 1388 aa11.86□□□□□ -0.51
LMX1A-201ENST00000294816 CBFA2T2O43439 604 aa11.85□□□□□ -0.51
LMX1A-201ENST00000294816 MYL6BP14649 208 aa11.85□□□□□ -0.51
LMX1A-201ENST00000294816 TFCP2Q12800 502 aa11.85□□□□□ -0.51
LMX1A-201ENST00000294816 LEKR1Q6ZMV7 388 aa11.85□□□□□ -0.51
LMX1A-201ENST00000294816 NEUROD6Q96NK8 337 aa11.85□□□□□ -0.51
LMX1A-201ENST00000294816 GPHNQ9NQX3 736 aaPredicted RBP11.85□□□□□ -0.51
LMX1A-201ENST00000294816 VPS18Q9P253 973 aa11.85□□□□□ -0.51
LMX1A-201ENST00000294816 PPP2R2CQ9Y2T4 447 aa11.85□□□□□ -0.51
LMX1A-201ENST00000294816 FANCGO15287 622 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms