RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 CHL1O00533 1208 aa21.23■□□□□ 0.99
PCDH1-201ENST00000287008 KIF5CO60282 957 aa21.23■□□□□ 0.99
PCDH1-201ENST00000287008 EIF3JO75822 258 aaKnown RBP21.23■□□□□ 0.99
PCDH1-201ENST00000287008 VTI1AQ96AJ9 217 aa21.23■□□□□ 0.99
PCDH1-201ENST00000287008 EXOC1Q9NV70 894 aa21.23■□□□□ 0.99
PCDH1-201ENST00000287008 GGA1Q9UJY5 639 aa21.23■□□□□ 0.99
PCDH1-201ENST00000287008 TNNQ9UQP3 1299 aa21.23■□□□□ 0.99
PCDH1-201ENST00000287008 RTL9Q8NET4 1388 aa21.23■□□□□ 0.99
PCDH1-201ENST00000287008 SPDYE4A6NLX3 237 aa21.23■□□□□ 0.99
PCDH1-201ENST00000287008 GJA3Q9Y6H8 435 aa21.23■□□□□ 0.99
PCDH1-201ENST00000287008 CAVIN2O95810 425 aa21.22■□□□□ 0.99
PCDH1-201ENST00000287008 ZSCAN22P10073 491 aaPredicted RBP21.22■□□□□ 0.99
PCDH1-201ENST00000287008 RRP36Q96EU6 259 aaKnown RBP21.22■□□□□ 0.99
PCDH1-201ENST00000287008 ZNF496Q96IT1 587 aaPredicted RBP21.22■□□□□ 0.99
PCDH1-201ENST00000287008 RMND1Q9NWS8 449 aa21.22■□□□□ 0.99
PCDH1-201ENST00000287008 KIF21AQ7Z4S6 1674 aa21.22■□□□□ 0.99
PCDH1-201ENST00000287008 CEP170Q5SW79 1584 aa21.22■□□□□ 0.99
PCDH1-201ENST00000287008 TRIM75PA6NK02 468 aa21.22■□□□□ 0.99
PCDH1-201ENST00000287008 PUM3Q15397 648 aaKnown RBP21.22■□□□□ 0.99
PCDH1-201ENST00000287008 TSPYL1Q9H0U9 437 aa21.22■□□□□ 0.99
PCDH1-201ENST00000287008 ESPNB1AK53 854 aa21.21■□□□□ 0.99
PCDH1-201ENST00000287008 H0YIN7 160 aa21.21■□□□□ 0.99
PCDH1-201ENST00000287008 USP37Q86T82 979 aa21.21■□□□□ 0.99
PCDH1-201ENST00000287008 MACROD2A1Z1Q3 448 aa21.21■□□□□ 0.99
PCDH1-201ENST00000287008 KIF4BQ2VIQ3 1234 aa21.21■□□□□ 0.99
PCDH1-201ENST00000287008 TRIM47Q96LD4 638 aa21.21■□□□□ 0.99
PCDH1-201ENST00000287008 CLIP2Q9UDT6 1046 aa21.21■□□□□ 0.99
PCDH1-201ENST00000287008 SH2D4AQ9H788 454 aa21.21■□□□□ 0.99
PCDH1-201ENST00000287008 RAD50Q92878 1312 aa21.21■□□□□ 0.99
PCDH1-201ENST00000287008 NPC1L1Q9UHC9 1359 aa21.21■□□□□ 0.99
PCDH1-201ENST00000287008 APBA3O96018 575 aa21.21■□□□□ 0.99
PCDH1-201ENST00000287008 PTPN14Q15678 1187 aa21.21■□□□□ 0.99
PCDH1-201ENST00000287008 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.21■□□□□ 0.99
PCDH1-201ENST00000287008 MBD4O95243 580 aa21.2■□□□□ 0.98
PCDH1-201ENST00000287008 STAT6P42226 847 aa21.2■□□□□ 0.98
PCDH1-201ENST00000287008 CCDC171Q6TFL3 1326 aa21.2■□□□□ 0.98
PCDH1-201ENST00000287008 PZPP20742 1482 aa21.2■□□□□ 0.98
PCDH1-201ENST00000287008 GNA11P29992 359 aa21.2■□□□□ 0.98
PCDH1-201ENST00000287008 DRC1Q96MC2 740 aa21.2■□□□□ 0.98
PCDH1-201ENST00000287008 DHX32Q7L7V1 743 aaKnown RBP21.2■□□□□ 0.98
PCDH1-201ENST00000287008 SMC5Q8IY18 1101 aa21.2■□□□□ 0.98
PCDH1-201ENST00000287008 PAFAH1B1P43034 410 aa21.19■□□□□ 0.98
PCDH1-201ENST00000287008 LARGE2Q8N3Y3 721 aa21.19■□□□□ 0.98
PCDH1-201ENST00000287008 DPP8Q6V1X1 898 aaPredicted RBP21.19■□□□□ 0.98
PCDH1-201ENST00000287008 USP25Q9UHP3 1055 aa21.19■□□□□ 0.98
PCDH1-201ENST00000287008 ISM2Q6H9L7 571 aa21.18■□□□□ 0.98
PCDH1-201ENST00000287008 TCHPQ9BT92 498 aa21.18■□□□□ 0.98
PCDH1-201ENST00000287008 CWC15Q9P013 229 aaKnown RBP21.18■□□□□ 0.98
PCDH1-201ENST00000287008 N4BP3O15049 544 aa21.18■□□□□ 0.98
PCDH1-201ENST00000287008 EZRP15311 586 aaKnown RBP21.18■□□□□ 0.98
PCDH1-201ENST00000287008 WDR66Q8TBY9 1149 aa21.18■□□□□ 0.98
PCDH1-201ENST00000287008 MAST3O60307 1309 aa21.17■□□□□ 0.98
PCDH1-201ENST00000287008 CREB3L3Q68CJ9 461 aa21.17■□□□□ 0.98
PCDH1-201ENST00000287008 FERMT2Q96AC1 680 aa21.17■□□□□ 0.98
PCDH1-201ENST00000287008 ERVV-2B6SEH9 535 aa21.17■□□□□ 0.98
PCDH1-201ENST00000287008 CHST3Q7LGC8 479 aa21.17■□□□□ 0.98
PCDH1-201ENST00000287008 PUF60Q9UHX1 559 aaKnown RBP21.17■□□□□ 0.98
PCDH1-201ENST00000287008 GBP2P32456 591 aaPredicted RBP21.17■□□□□ 0.98
PCDH1-201ENST00000287008 KRT79Q5XKE5 535 aa21.17■□□□□ 0.98
PCDH1-201ENST00000287008 AFMP43652 599 aa21.17■□□□□ 0.98
PCDH1-201ENST00000287008 LUZP1Q86V48 1076 aa21.17■□□□□ 0.98
PCDH1-201ENST00000287008 DNA2P51530 1060 aa21.16■□□□□ 0.98
PCDH1-201ENST00000287008 ZSCAN30Q86W11 494 aa21.16■□□□□ 0.98
PCDH1-201ENST00000287008 LEKR1Q6ZMV7 388 aa21.16■□□□□ 0.98
PCDH1-201ENST00000287008 MRPS27Q92552 414 aaKnown RBP21.16■□□□□ 0.98
PCDH1-201ENST00000287008 MAST1Q9Y2H9 1570 aa21.16■□□□□ 0.98
PCDH1-201ENST00000287008 ADGRL2O95490 1459 aa21.16■□□□□ 0.98
PCDH1-201ENST00000287008 CTNNA2P26232 953 aa21.16■□□□□ 0.98
PCDH1-201ENST00000287008 EIF6P56537 245 aaKnown RBP21.16■□□□□ 0.98
PCDH1-201ENST00000287008 GSDMDP57764 484 aa21.16■□□□□ 0.98
PCDH1-201ENST00000287008 KIF18AQ8NI77 898 aa21.16■□□□□ 0.98
PCDH1-201ENST00000287008 SPAG5Q96R06 1193 aa21.16■□□□□ 0.98
PCDH1-201ENST00000287008 DBNDD2Q9BQY9 259 aa21.16■□□□□ 0.98
PCDH1-201ENST00000287008 TNNI3KQ59H18 835 aa21.15■□□□□ 0.98
PCDH1-201ENST00000287008 CTNNBL1Q8WYA6 563 aaPredicted RBP21.15■□□□□ 0.98
PCDH1-201ENST00000287008 FPGT-TNNI3KV9GXZ4 949 aa21.15■□□□□ 0.98
PCDH1-201ENST00000287008 GSTTP1A0A1W2PQM5 241 aa21.15■□□□□ 0.98
PCDH1-201ENST00000287008 PDE6BP35913 854 aa21.15■□□□□ 0.98
PCDH1-201ENST00000287008 RRAGBQ5VZM2 374 aa21.15■□□□□ 0.98
PCDH1-201ENST00000287008 PLEKHM2Q8IWE5 1019 aa21.15■□□□□ 0.98
PCDH1-201ENST00000287008 GBP3Q9H0R5 595 aa21.15■□□□□ 0.98
PCDH1-201ENST00000287008 NEMFO60524 1076 aa21.15■□□□□ 0.98
PCDH1-201ENST00000287008 ASIC1P78348 528 aa21.15■□□□□ 0.98
PCDH1-201ENST00000287008 HELLSQ9NRZ9 838 aa21.15■□□□□ 0.98
PCDH1-201ENST00000287008 URI1O94763 535 aaPredicted RBP21.15■□□□□ 0.98
PCDH1-201ENST00000287008 CHMLP26374 656 aa21.15■□□□□ 0.98
PCDH1-201ENST00000287008 FAM193AP78312 1265 aa21.15■□□□□ 0.98
PCDH1-201ENST00000287008 TAF3Q5VWG9 929 aa21.14■□□□□ 0.98
PCDH1-201ENST00000287008 PSMA7O14818 248 aa21.14■□□□□ 0.97
PCDH1-201ENST00000287008 ZBTB7BO15156 539 aaPredicted RBP21.14■□□□□ 0.97
PCDH1-201ENST00000287008 KRT13P13646 458 aa21.14■□□□□ 0.97
PCDH1-201ENST00000287008 SPAG1Q07617 926 aa21.14■□□□□ 0.97
PCDH1-201ENST00000287008 SUPT20HQ8NEM7 779 aa21.14■□□□□ 0.97
PCDH1-201ENST00000287008 DNMT1P26358 1616 aaKnown RBP21.14■□□□□ 0.97
PCDH1-201ENST00000287008 CCDC172P0C7W6 258 aa21.14■□□□□ 0.97
PCDH1-201ENST00000287008 MARCKSP29966 332 aaPredicted RBP21.14■□□□□ 0.97
PCDH1-201ENST00000287008 GCKRQ14397 625 aa21.14■□□□□ 0.97
PCDH1-201ENST00000287008 TMC6Q7Z403 805 aa21.14■□□□□ 0.97
PCDH1-201ENST00000287008 ZFYVE16Q7Z3T8 1539 aa21.14■□□□□ 0.97
PCDH1-201ENST00000287008 APOBRQ0VD83 1088 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms