RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 FAM200AQ8TCP9 573 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 MAP3K1Q13233 1512 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 PRIM1P49642 420 aaKnown RBP13.06□□□□□ -0.32
USP53-201ENST00000274030 PLS1Q14651 629 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 C8orf34Q49A92 452 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 LRRC27Q9C0I9 530 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 SERPINA10Q9UK55 444 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 MSH6P52701 1360 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 TRIM75PA6NK02 468 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 CREB3L3Q68CJ9 461 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 TCHPQ9BT92 498 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 MRVI1Q9Y6F6 885 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 UBAP1LF5GYI3 381 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 XRCC6P12956 609 aaKnown RBP eCLIP13.06□□□□□ -0.32
USP53-201ENST00000274030 MCM7P33993 719 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 DTNBO60941 627 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 SYT1P21579 422 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 DPH6Q7L8W6 267 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 EYA1Q99502 592 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 ZBTB21Q9ULJ3 1066 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 NPHP3Q7Z494 1330 aa13.05□□□□□ -0.32
USP53-201ENST00000274030 CAVIN2O95810 425 aa13.05□□□□□ -0.32
USP53-201ENST00000274030 TICAM2Q86XR7 235 aa13.05□□□□□ -0.32
USP53-201ENST00000274030 PSMA7O14818 248 aa13.05□□□□□ -0.32
USP53-201ENST00000274030 RNF113AO15541 343 aaKnown RBP13.05□□□□□ -0.32
USP53-201ENST00000274030 ACTN2P35609 894 aa13.05□□□□□ -0.32
USP53-201ENST00000274030 TBC1D5Q92609 795 aa13.05□□□□□ -0.32
USP53-201ENST00000274030 BICC1Q9H694 974 aaKnown RBP13.05□□□□□ -0.32
USP53-201ENST00000274030 KDM5BQ9UGL1 1544 aa13.05□□□□□ -0.32
USP53-201ENST00000274030 MCM6Q14566 821 aa13.05□□□□□ -0.32
USP53-201ENST00000274030 NOLC1Q14978 699 aaKnown RBP eCLIP13.05□□□□□ -0.32
USP53-201ENST00000274030 RTL1A6NKG5 1358 aa13.05□□□□□ -0.32
USP53-201ENST00000274030 SEC24BO95487 1268 aa13.05□□□□□ -0.32
USP53-201ENST00000274030 SP4Q02446 784 aa13.05□□□□□ -0.32
USP53-201ENST00000274030 ZC3H12CQ9C0D7 883 aaKnown RBP13.05□□□□□ -0.32
USP53-201ENST00000274030 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.05□□□□□ -0.32
USP53-201ENST00000274030 FAM212AQ96EL1 285 aa13.04□□□□□ -0.32
USP53-201ENST00000274030 POTEB2H3BUK9 544 aa13.04□□□□□ -0.32
USP53-201ENST00000274030 IL2RBP14784 551 aa13.04□□□□□ -0.32
USP53-201ENST00000274030 CYLC1P35663 651 aaPredicted RBP13.04□□□□□ -0.32
USP53-201ENST00000274030 RALGAPBQ86X10 1494 aa13.04□□□□□ -0.32
USP53-201ENST00000274030 PTPDC1A2A3K4 754 aa13.04□□□□□ -0.32
USP53-201ENST00000274030 TMEM110-MUSTN1A8MSY1 372 aa13.04□□□□□ -0.32
USP53-201ENST00000274030 CA8P35219 290 aa13.04□□□□□ -0.32
USP53-201ENST00000274030 GNAQP50148 359 aa13.04□□□□□ -0.32
USP53-201ENST00000274030 DCTPP1Q9H773 170 aa13.04□□□□□ -0.32
USP53-201ENST00000274030 KRT13P13646 458 aa13.04□□□□□ -0.32
USP53-201ENST00000274030 ZNF804AQ7Z570 1209 aa13.04□□□□□ -0.32
USP53-201ENST00000274030 ZHX1Q9UKY1 873 aaPredicted RBP13.04□□□□□ -0.32
USP53-201ENST00000274030 NF2P35240 595 aa13.04□□□□□ -0.32
USP53-201ENST00000274030 TIMM10P62072 90 aa13.04□□□□□ -0.32
USP53-201ENST00000274030 GIMAP7Q8NHV1 300 aa13.04□□□□□ -0.32
USP53-201ENST00000274030 BMP15O95972 392 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 TYRO3Q06418 890 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.03□□□□□ -0.32
USP53-201ENST00000274030 CCDC129Q6ZRS4 1044 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 G2E3Q7L622 706 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 PLEKHM2Q8IWE5 1019 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 VTI1AQ96AJ9 217 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 FAM89AQ96GI7 184 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 CTAGE1Q96RT6 745 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 PAIP2Q9BPZ3 127 aaKnown RBP13.03□□□□□ -0.32
USP53-201ENST00000274030 HDAC9Q9UKV0 1011 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 ASXL1Q8IXJ9 1541 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 KARSQ15046 597 aaKnown RBP13.03□□□□□ -0.32
USP53-201ENST00000274030 TPTE2Q6XPS3 522 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 KLHDC4Q8TBB5 520 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 PAXBP1Q9Y5B6 917 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 CAPZA3Q96KX2 299 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 C6orf50Q9HD87 102 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 BMS1Q14692 1282 aaKnown RBP13.03□□□□□ -0.32
USP53-201ENST00000274030 ZNF354CQ86Y25 554 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 CARD14Q9BXL6 1004 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 TFCP2L1Q9NZI6 479 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 CLEC11AQ9Y240 323 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 IKBKGQ9Y6K9 419 aa13.03□□□□□ -0.32
USP53-201ENST00000274030 THOC2Q8NI27 1593 aaKnown RBP13.03□□□□□ -0.32
USP53-201ENST00000274030 ZNF608Q9ULD9 1512 aaPredicted RBP13.02□□□□□ -0.32
USP53-201ENST00000274030 CTAGE15A4D2H0 777 aa13.02□□□□□ -0.32
USP53-201ENST00000274030 SPDYE3A6NKU9 549 aa13.02□□□□□ -0.32
USP53-201ENST00000274030 STAMBPO95630 424 aa13.02□□□□□ -0.32
USP53-201ENST00000274030 CTAGE8P0CG41 777 aa13.02□□□□□ -0.32
USP53-201ENST00000274030 CTAGE6Q86UF2 777 aa13.02□□□□□ -0.32
USP53-201ENST00000274030 CTAGE4Q8IX94 777 aa13.02□□□□□ -0.32
USP53-201ENST00000274030 GCP02774 474 aa13.02□□□□□ -0.32
USP53-201ENST00000274030 CEP112Q8N8E3 955 aa13.02□□□□□ -0.32
USP53-201ENST00000274030 EHBP1Q8NDI1 1231 aa13.02□□□□□ -0.32
USP53-201ENST00000274030 LZTFL1Q9NQ48 299 aa13.02□□□□□ -0.33
USP53-201ENST00000274030 HSF2BPO75031 334 aa13.02□□□□□ -0.33
USP53-201ENST00000274030 CHMLP26374 656 aa13.02□□□□□ -0.33
USP53-201ENST00000274030 HSPA2P54652 639 aa13.02□□□□□ -0.33
USP53-201ENST00000274030 IFI16Q16666 785 aaKnown RBP13.02□□□□□ -0.33
USP53-201ENST00000274030 KRT79Q5XKE5 535 aa13.02□□□□□ -0.33
USP53-201ENST00000274030 PPP1R14CQ8TAE6 165 aa13.02□□□□□ -0.33
USP53-201ENST00000274030 OTUD7AQ8TE49 926 aaPredicted RBP13.02□□□□□ -0.33
USP53-201ENST00000274030 SRRTQ9BXP5 876 aaKnown RBP13.02□□□□□ -0.33
USP53-201ENST00000274030 CCDC171Q6TFL3 1326 aa13.02□□□□□ -0.33
USP53-201ENST00000274030 MICALCLQ6ZW33 695 aa13.01□□□□□ -0.33
USP53-201ENST00000274030 RRP36Q96EU6 259 aaKnown RBP13.01□□□□□ -0.33
USP53-201ENST00000274030 ZBTB40Q9NUA8 1239 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms