RNA–Protein interactions for RNA: ENST00000273062.6

CTDSP1-201, Transcript of CTD small phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDSP1, Length 2,638 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSP1-201ENST00000273062 HOMER1Q86YM7 354 aa18.28■□□□□ 0.52
CTDSP1-201ENST00000273062 LIMCH1Q9UPQ0 1083 aa18.28■□□□□ 0.52
CTDSP1-201ENST00000273062 STRCP1A6NGW2 1772 aa18.28■□□□□ 0.52
CTDSP1-201ENST00000273062 PHRF1Q9P1Y6 1649 aaKnown RBP18.27■□□□□ 0.52
CTDSP1-201ENST00000273062 ATP6V1AP38606 617 aa18.27■□□□□ 0.52
CTDSP1-201ENST00000273062 RNF217Q8TC41 542 aa18.27■□□□□ 0.52
CTDSP1-201ENST00000273062 IL17RAQ96F46 866 aa18.27■□□□□ 0.52
CTDSP1-201ENST00000273062 CHPF2Q9P2E5 772 aa18.27■□□□□ 0.52
CTDSP1-201ENST00000273062 MED1Q15648 1581 aaPredicted RBP18.27■□□□□ 0.51
CTDSP1-201ENST00000273062 BTBD11A6QL63 1104 aa18.27■□□□□ 0.51
CTDSP1-201ENST00000273062 AKAP4Q5JQC9 854 aa18.27■□□□□ 0.51
CTDSP1-201ENST00000273062 ARMCX5Q6P1M9 558 aa18.27■□□□□ 0.51
CTDSP1-201ENST00000273062 SNX14Q9Y5W7 946 aa18.27■□□□□ 0.51
CTDSP1-201ENST00000273062 IRF6O14896 467 aa18.26■□□□□ 0.51
CTDSP1-201ENST00000273062 KRT85P78386 507 aa18.26■□□□□ 0.51
CTDSP1-201ENST00000273062 SKIDA1Q1XH10 827 aa18.26■□□□□ 0.51
CTDSP1-201ENST00000273062 SGSM3Q96HU1 749 aa18.26■□□□□ 0.51
CTDSP1-201ENST00000273062 PDE11AQ9HCR9 933 aa18.26■□□□□ 0.51
CTDSP1-201ENST00000273062 PRAMEF22A3QJZ6 481 aa18.26■□□□□ 0.51
CTDSP1-201ENST00000273062 GNAI2P04899 355 aa18.26■□□□□ 0.51
CTDSP1-201ENST00000273062 TEFQ10587 303 aa18.26■□□□□ 0.51
CTDSP1-201ENST00000273062 ARFGAP3Q9NP61 516 aa18.26■□□□□ 0.51
CTDSP1-201ENST00000273062 RGPD5Q99666 1765 aa18.26■□□□□ 0.51
CTDSP1-201ENST00000273062 ATF3P18847 181 aa18.25■□□□□ 0.51
CTDSP1-201ENST00000273062 GNL2Q13823 731 aaKnown RBP18.25■□□□□ 0.51
CTDSP1-201ENST00000273062 NECAB1Q8N987 351 aa18.25■□□□□ 0.51
CTDSP1-201ENST00000273062 FBXW7Q969H0 707 aa18.25■□□□□ 0.51
CTDSP1-201ENST00000273062 PARD6BQ9BYG5 372 aa18.25■□□□□ 0.51
CTDSP1-201ENST00000273062 AKAP2Q9Y2D5 859 aa18.25■□□□□ 0.51
CTDSP1-201ENST00000273062 MST1RQ04912 1400 aa18.25■□□□□ 0.51
CTDSP1-201ENST00000273062 EFCAB8A8MWE9 144 aa18.25■□□□□ 0.51
CTDSP1-201ENST00000273062 RNMTO43148 476 aaKnown RBP18.25■□□□□ 0.51
CTDSP1-201ENST00000273062 KIF1CO43896 1103 aaKnown RBP18.25■□□□□ 0.51
CTDSP1-201ENST00000273062 ETF1P62495 437 aaKnown RBP18.25■□□□□ 0.51
CTDSP1-201ENST00000273062 LRRC31Q6UY01 552 aa18.25■□□□□ 0.51
CTDSP1-201ENST00000273062 DDX54Q8TDD1 881 aaKnown RBP18.25■□□□□ 0.51
CTDSP1-201ENST00000273062 BABAM1Q9NWV8 329 aa18.25■□□□□ 0.51
CTDSP1-201ENST00000273062 PARP3Q9Y6F1 533 aa18.25■□□□□ 0.51
CTDSP1-201ENST00000273062 TRIM65Q6PJ69 517 aa18.24■□□□□ 0.51
CTDSP1-201ENST00000273062 DHX40Q8IX18 779 aaKnown RBP18.24■□□□□ 0.51
CTDSP1-201ENST00000273062 PGBD1Q96JS3 809 aa18.24■□□□□ 0.51
CTDSP1-201ENST00000273062 CEP89Q96ST8 783 aa18.24■□□□□ 0.51
CTDSP1-201ENST00000273062 DDX19AQ9NUU7 478 aaKnown RBP18.24■□□□□ 0.51
CTDSP1-201ENST00000273062 GOLGA6L4A6NEF3 574 aa18.24■□□□□ 0.51
CTDSP1-201ENST00000273062 CPP00450 1065 aa18.24■□□□□ 0.51
CTDSP1-201ENST00000273062 SCP2P22307 547 aa18.24■□□□□ 0.51
CTDSP1-201ENST00000273062 LONRF2Q1L5Z9 754 aa18.24■□□□□ 0.51
CTDSP1-201ENST00000273062 MICALL1Q8N3F8 863 aa18.24■□□□□ 0.51
CTDSP1-201ENST00000273062 USP44Q9H0E7 712 aa18.24■□□□□ 0.51
CTDSP1-201ENST00000273062 C1orf141Q5JVX7 400 aa18.23■□□□□ 0.51
CTDSP1-201ENST00000273062 TADA2BQ86TJ2 420 aa18.23■□□□□ 0.51
CTDSP1-201ENST00000273062 ERCC4Q92889 916 aaPredicted RBP18.23■□□□□ 0.51
CTDSP1-201ENST00000273062 SRRTQ9BXP5 876 aaKnown RBP18.23■□□□□ 0.51
CTDSP1-201ENST00000273062 FAN1Q9Y2M0 1017 aa18.23■□□□□ 0.51
CTDSP1-201ENST00000273062 SALL3Q9BXA9 1300 aa18.23■□□□□ 0.51
CTDSP1-201ENST00000273062 LMO7Q8WWI1 1683 aa18.23■□□□□ 0.51
CTDSP1-201ENST00000273062 MCM6Q14566 821 aa18.23■□□□□ 0.51
CTDSP1-201ENST00000273062 PPP2R5AQ15172 486 aa18.23■□□□□ 0.51
CTDSP1-201ENST00000273062 ISM2Q6H9L7 571 aa18.23■□□□□ 0.51
CTDSP1-201ENST00000273062 MAP4K4O95819 1239 aaPredicted RBP18.22■□□□□ 0.51
CTDSP1-201ENST00000273062 FAM177A1Q8N128 213 aaPredicted RBP18.22■□□□□ 0.51
CTDSP1-201ENST00000273062 BICD2Q8TD16 824 aa18.22■□□□□ 0.51
CTDSP1-201ENST00000273062 SPATA32Q96LK8 384 aa18.22■□□□□ 0.51
CTDSP1-201ENST00000273062 KDM3BQ7LBC6 1761 aa18.22■□□□□ 0.51
CTDSP1-201ENST00000273062 HMMRO75330 724 aa18.22■□□□□ 0.51
CTDSP1-201ENST00000273062 CHRNA2Q15822 529 aa18.22■□□□□ 0.51
CTDSP1-201ENST00000273062 KCNV1Q6PIU1 500 aa18.22■□□□□ 0.51
CTDSP1-201ENST00000273062 SUGCTQ9HAC7 445 aa18.22■□□□□ 0.51
CTDSP1-201ENST00000273062 HYPKQ9NX55 129 aa18.22■□□□□ 0.51
CTDSP1-201ENST00000273062 NCAPD2Q15021 1401 aa18.22■□□□□ 0.51
CTDSP1-201ENST00000273062 RPS6KA5O75582 802 aa18.21■□□□□ 0.51
CTDSP1-201ENST00000273062 SMC2O95347 1197 aa18.21■□□□□ 0.51
CTDSP1-201ENST00000273062 PROSER3Q2NL68 480 aa18.21■□□□□ 0.51
CTDSP1-201ENST00000273062 AMOTQ4VCS5 1084 aa18.21■□□□□ 0.51
CTDSP1-201ENST00000273062 WWC2Q6AWC2 1192 aa18.21■□□□□ 0.51
CTDSP1-201ENST00000273062 FAM43BQ6ZT52 329 aaPredicted RBP18.21■□□□□ 0.51
CTDSP1-201ENST00000273062 LEO1Q8WVC0 666 aaPredicted RBP18.21■□□□□ 0.51
CTDSP1-201ENST00000273062 PSDA5PKW4 1024 aaPredicted RBP18.21■□□□□ 0.51
CTDSP1-201ENST00000273062 BECN2A8MW95 431 aa18.21■□□□□ 0.51
CTDSP1-201ENST00000273062 MNAT1P51948 309 aa18.21■□□□□ 0.51
CTDSP1-201ENST00000273062 LRRFIP1Q32MZ4 808 aaKnown RBP18.21■□□□□ 0.51
CTDSP1-201ENST00000273062 DNAAF4Q8WXU2 420 aa18.21■□□□□ 0.51
CTDSP1-201ENST00000273062 NLRP2Q9NX02 1062 aa18.21■□□□□ 0.51
CTDSP1-201ENST00000273062 KIF1AQ12756 1690 aa18.21■□□□□ 0.51
CTDSP1-201ENST00000273062 ALS2Q96Q42 1657 aa18.21■□□□□ 0.51
CTDSP1-201ENST00000273062 GOLIM4O00461 696 aa18.2■□□□□ 0.5
CTDSP1-201ENST00000273062 MAP2K7O14733 419 aa18.2■□□□□ 0.5
CTDSP1-201ENST00000273062 PHACTR2O75167 634 aa18.2■□□□□ 0.5
CTDSP1-201ENST00000273062 APOBRQ0VD83 1088 aa18.2■□□□□ 0.5
CTDSP1-201ENST00000273062 OSBPL5Q9H0X9 879 aaPredicted RBP18.2■□□□□ 0.5
CTDSP1-201ENST00000273062 PHLPP2Q6ZVD8 1323 aa18.2■□□□□ 0.5
CTDSP1-201ENST00000273062 PI4KAP2A4QPH2 592 aa18.2■□□□□ 0.5
CTDSP1-201ENST00000273062 COL9A3Q14050 684 aaPredicted RBP18.2■□□□□ 0.5
CTDSP1-201ENST00000273062 FBXW10Q5XX13 1052 aa18.2■□□□□ 0.5
CTDSP1-201ENST00000273062 PI4KAP1Q8N8J0 262 aa18.2■□□□□ 0.5
CTDSP1-201ENST00000273062 BICC1Q9H694 974 aaKnown RBP18.2■□□□□ 0.5
CTDSP1-201ENST00000273062 NPHP3Q7Z494 1330 aa18.2■□□□□ 0.5
CTDSP1-201ENST00000273062 LARP1BQ659C4 914 aaKnown RBP18.19■□□□□ 0.5
CTDSP1-201ENST00000273062 TMC6Q7Z403 805 aa18.19■□□□□ 0.5
CTDSP1-201ENST00000273062 EFCAB13Q8IY85 973 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms