RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 FOXN1O15353 648 aa12.4□□□□□ -0.42
VPS41-201ENST00000265745 CELF2O95319 508 aaKnown RBP12.4□□□□□ -0.42
VPS41-201ENST00000265745 NBR1Q14596 966 aa12.4□□□□□ -0.42
VPS41-201ENST00000265745 TBC1D10BQ4KMP7 808 aaPredicted RBP12.4□□□□□ -0.42
VPS41-201ENST00000265745 ZNF521Q96K83 1311 aa12.39□□□□□ -0.43
VPS41-201ENST00000265745 F6X3S4 739 aa12.39□□□□□ -0.43
VPS41-201ENST00000265745 GTPBP6O43824 516 aaPredicted RBP12.39□□□□□ -0.43
VPS41-201ENST00000265745 PRR29P0C7W0 189 aa12.39□□□□□ -0.43
VPS41-201ENST00000265745 ITGA6P23229 1130 aa12.39□□□□□ -0.43
VPS41-201ENST00000265745 MNX1P50219 401 aaPredicted RBP12.39□□□□□ -0.43
VPS41-201ENST00000265745 BEND3Q5T5X7 828 aa12.39□□□□□ -0.43
VPS41-201ENST00000265745 RBM26Q5T8P6 1007 aaKnown RBP12.39□□□□□ -0.43
VPS41-201ENST00000265745 PODNQ7Z5L7 613 aa12.39□□□□□ -0.43
VPS41-201ENST00000265745 SAPCD2Q86UD0 394 aa12.39□□□□□ -0.43
VPS41-201ENST00000265745 USP48Q86UV5 1035 aa12.39□□□□□ -0.43
VPS41-201ENST00000265745 TNS4Q8IZW8 715 aa12.39□□□□□ -0.43
VPS41-201ENST00000265745 CAPNS2Q96L46 248 aa12.39□□□□□ -0.43
VPS41-201ENST00000265745 DDX60Q8IY21 1712 aaKnown RBP12.39□□□□□ -0.43
VPS41-201ENST00000265745 LAMB2P55268 1798 aa12.38□□□□□ -0.43
VPS41-201ENST00000265745 STK25O00506 426 aa12.38□□□□□ -0.43
VPS41-201ENST00000265745 IGHMBP2P38935 993 aaKnown RBP12.38□□□□□ -0.43
VPS41-201ENST00000265745 ECE1P42892 770 aa12.38□□□□□ -0.43
VPS41-201ENST00000265745 CCT4P50991 539 aaKnown RBP12.38□□□□□ -0.43
VPS41-201ENST00000265745 ZNF280AP59817 542 aaPredicted RBP12.38□□□□□ -0.43
VPS41-201ENST00000265745 MAP2K1Q02750 393 aaPredicted RBP12.38□□□□□ -0.43
VPS41-201ENST00000265745 FAM161AQ3B820 660 aa12.38□□□□□ -0.43
VPS41-201ENST00000265745 CYP4F22Q6NT55 531 aa12.38□□□□□ -0.43
VPS41-201ENST00000265745 RSBN1LQ6PCB5 846 aaPredicted RBP12.38□□□□□ -0.43
VPS41-201ENST00000265745 DLK2Q6UY11 383 aa12.38□□□□□ -0.43
VPS41-201ENST00000265745 AGBL3Q8NEM8 1001 aa12.38□□□□□ -0.43
VPS41-201ENST00000265745 GMLQ99445 158 aa12.38□□□□□ -0.43
VPS41-201ENST00000265745 USP17L3A6NCW0 530 aa12.37□□□□□ -0.43
VPS41-201ENST00000265745 USP17L4A6NCW7 530 aa12.37□□□□□ -0.43
VPS41-201ENST00000265745 CTCFP49711 727 aaPredicted RBP12.37□□□□□ -0.43
VPS41-201ENST00000265745 FOXO4P98177 505 aa12.37□□□□□ -0.43
VPS41-201ENST00000265745 USP17L1Q7RTZ2 530 aa12.37□□□□□ -0.43
VPS41-201ENST00000265745 KRT26Q7Z3Y9 468 aa12.37□□□□□ -0.43
VPS41-201ENST00000265745 AIDAQ96BJ3 306 aa12.37□□□□□ -0.43
VPS41-201ENST00000265745 HHIPL1Q96JK4 782 aa12.37□□□□□ -0.43
VPS41-201ENST00000265745 MPHOSPH8Q99549 860 aa12.37□□□□□ -0.43
VPS41-201ENST00000265745 ZNF408Q9H9D4 720 aa12.37□□□□□ -0.43
VPS41-201ENST00000265745 PRDM10Q9NQV6 1147 aa12.37□□□□□ -0.43
VPS41-201ENST00000265745 LEMD3Q9Y2U8 911 aa12.37□□□□□ -0.43
VPS41-201ENST00000265745 LRRC37AA6NMS7 1700 aa12.37□□□□□ -0.43
VPS41-201ENST00000265745 TAF1P21675 1872 aa12.36□□□□□ -0.43
VPS41-201ENST00000265745 USP17L8P0C7I0 530 aa12.36□□□□□ -0.43
VPS41-201ENST00000265745 KIF4BQ2VIQ3 1234 aa12.36□□□□□ -0.43
VPS41-201ENST00000265745 TXNRD3Q86VQ6 643 aa12.36□□□□□ -0.43
VPS41-201ENST00000265745 DCPSQ96C86 337 aaKnown RBP12.36□□□□□ -0.43
VPS41-201ENST00000265745 ANKRD2Q9GZV1 360 aa12.36□□□□□ -0.43
VPS41-201ENST00000265745 COA1Q9GZY4 146 aa12.36□□□□□ -0.43
VPS41-201ENST00000265745 MED23Q9ULK4 1368 aa12.35□□□□□ -0.43
VPS41-201ENST00000265745 ANKRD18BA2A2Z9 1011 aa12.35□□□□□ -0.43
VPS41-201ENST00000265745 MAP2K2P36507 400 aa12.35□□□□□ -0.43
VPS41-201ENST00000265745 GRM1Q13255 1194 aa12.35□□□□□ -0.43
VPS41-201ENST00000265745 SCARF1Q14162 830 aa12.35□□□□□ -0.43
VPS41-201ENST00000265745 ZNF804BA4D1E1 1349 aa12.35□□□□□ -0.43
VPS41-201ENST00000265745 ADM5C9JUS6 153 aa12.34□□□□□ -0.43
VPS41-201ENST00000265745 GRM8O00222 908 aa12.34□□□□□ -0.43
VPS41-201ENST00000265745 ALDH1L1O75891 902 aa12.34□□□□□ -0.43
VPS41-201ENST00000265745 CHRM1P11229 460 aaPredicted RBP12.34□□□□□ -0.43
VPS41-201ENST00000265745 KLRK1P26718 216 aa12.34□□□□□ -0.43
VPS41-201ENST00000265745 LBX1P52954 281 aa12.34□□□□□ -0.43
VPS41-201ENST00000265745 CHRNDQ07001 517 aa12.34□□□□□ -0.43
VPS41-201ENST00000265745 IFIT5Q13325 482 aaKnown RBP12.34□□□□□ -0.43
VPS41-201ENST00000265745 EPHA10Q5JZY3 1008 aa12.34□□□□□ -0.43
VPS41-201ENST00000265745 DACT2Q5SW24 774 aa12.34□□□□□ -0.43
VPS41-201ENST00000265745 STRIP1Q5VSL9 837 aa12.34□□□□□ -0.43
VPS41-201ENST00000265745 LMBR1LQ6UX01 489 aa12.34□□□□□ -0.43
VPS41-201ENST00000265745 RASEFQ8IZ41 740 aa12.34□□□□□ -0.43
VPS41-201ENST00000265745 ZNF609O15014 1411 aa12.34□□□□□ -0.43
VPS41-201ENST00000265745 ASTN2O75129 1339 aaPredicted RBP12.34□□□□□ -0.43
VPS41-201ENST00000265745 AOC2O75106 756 aa12.33□□□□□ -0.44
VPS41-201ENST00000265745 HSPA8P11142 646 aaKnown RBP12.33□□□□□ -0.44
VPS41-201ENST00000265745 SLC4A10Q6U841 1118 aa12.33□□□□□ -0.44
VPS41-201ENST00000265745 SULF1Q8IWU6 871 aa12.33□□□□□ -0.44
VPS41-201ENST00000265745 MXD3Q9BW11 206 aa12.33□□□□□ -0.44
VPS41-201ENST00000265745 SRCIN1Q9C0H9 1055 aa12.33□□□□□ -0.44
VPS41-201ENST00000265745 MYOZ2Q9NPC6 264 aa12.33□□□□□ -0.44
VPS41-201ENST00000265745 GGA3Q9NZ52 723 aa12.33□□□□□ -0.44
VPS41-201ENST00000265745 C9orf78Q9NZ63 289 aaPredicted RBP12.33□□□□□ -0.44
VPS41-201ENST00000265745 E9PSI1 815 aa12.32□□□□□ -0.44
VPS41-201ENST00000265745 SNAP23O00161 211 aa12.32□□□□□ -0.44
VPS41-201ENST00000265745 TAF5LO75529 589 aa12.32□□□□□ -0.44
VPS41-201ENST00000265745 HUNKP57058 714 aa12.32□□□□□ -0.44
VPS41-201ENST00000265745 ANGEL2Q5VTE6 544 aaKnown RBP12.32□□□□□ -0.44
VPS41-201ENST00000265745 TTLL5Q6EMB2 1281 aa12.32□□□□□ -0.44
VPS41-201ENST00000265745 C15orf52Q6ZUT6 534 aaKnown RBP12.32□□□□□ -0.44
VPS41-201ENST00000265745 MRPL50Q8N5N7 158 aaKnown RBP12.32□□□□□ -0.44
VPS41-201ENST00000265745 C2orf69Q8N8R5 385 aa12.32□□□□□ -0.44
VPS41-201ENST00000265745 HELBQ8NG08 1087 aaPredicted RBP12.32□□□□□ -0.44
VPS41-201ENST00000265745 BEGAINQ9BUH8 593 aa12.32□□□□□ -0.44
VPS41-201ENST00000265745 GBA2Q9HCG7 927 aaPredicted RBP12.32□□□□□ -0.44
VPS41-201ENST00000265745 CHMP3Q9Y3E7 222 aa12.32□□□□□ -0.44
VPS41-201ENST00000265745 KCNJ4P48050 445 aa12.31□□□□□ -0.44
VPS41-201ENST00000265745 SLFN5Q08AF3 891 aa12.31□□□□□ -0.44
VPS41-201ENST00000265745 CCDC57Q2TAC2 916 aa12.31□□□□□ -0.44
VPS41-201ENST00000265745 REM2Q8IYK8 340 aaPredicted RBP12.31□□□□□ -0.44
VPS41-201ENST00000265745 OGFOD1Q8N543 542 aa12.31□□□□□ -0.44
VPS41-201ENST00000265745 KAZALD1Q96I82 304 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 113.3 ms