RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 ZNF831Q5JPB2 1677 aa15.38■□□□□ 0.05
SPTLC1-201ENST00000262554 F13A1P00488 732 aa15.38■□□□□ 0.05
SPTLC1-201ENST00000262554 HSP90B1P14625 803 aaKnown RBP15.38■□□□□ 0.05
SPTLC1-201ENST00000262554 ZNF445P59923 1031 aa15.38■□□□□ 0.05
SPTLC1-201ENST00000262554 ST3GAL1Q11201 340 aa15.38■□□□□ 0.05
SPTLC1-201ENST00000262554 ZSCAN23Q3MJ62 389 aa15.38■□□□□ 0.05
SPTLC1-201ENST00000262554 SLFNL1Q499Z3 407 aa15.38■□□□□ 0.05
SPTLC1-201ENST00000262554 SUSD4Q5VX71 490 aa15.38■□□□□ 0.05
SPTLC1-201ENST00000262554 UTP14AQ9BVJ6 771 aaKnown RBP15.38■□□□□ 0.05
SPTLC1-201ENST00000262554 LRP5O75197 1615 aa15.38■□□□□ 0.05
SPTLC1-201ENST00000262554 CAMTA2O94983 1202 aa15.37■□□□□ 0.05
SPTLC1-201ENST00000262554 PDE8BO95263 885 aa15.37■□□□□ 0.05
SPTLC1-201ENST00000262554 HSPD1P10809 573 aaKnown RBP15.37■□□□□ 0.05
SPTLC1-201ENST00000262554 COL5A3P25940 1745 aaPredicted RBP15.37■□□□□ 0.05
SPTLC1-201ENST00000262554 DSG3P32926 999 aa15.37■□□□□ 0.05
SPTLC1-201ENST00000262554 COL9A3Q14050 684 aaPredicted RBP15.37■□□□□ 0.05
SPTLC1-201ENST00000262554 VGLL2Q8N8G2 317 aa15.37■□□□□ 0.05
SPTLC1-201ENST00000262554 ZNF512BQ96KM6 892 aaPredicted RBP15.37■□□□□ 0.05
SPTLC1-201ENST00000262554 MROH5Q6ZUA9 1318 aa15.37■□□□□ 0.05
SPTLC1-201ENST00000262554 M0R2C6 588 aa15.37■□□□□ 0.05
SPTLC1-201ENST00000262554 ZAP70P43403 619 aa15.37■□□□□ 0.05
SPTLC1-201ENST00000262554 FOXD4L6Q3SYB3 417 aaPredicted RBP15.37■□□□□ 0.05
SPTLC1-201ENST00000262554 FOXD4L3Q6VB84 417 aaPredicted RBP15.37■□□□□ 0.05
SPTLC1-201ENST00000262554 AKAP11Q9UKA4 1901 aa15.37■□□□□ 0.05
SPTLC1-201ENST00000262554 LAMB2P55268 1798 aa15.37■□□□□ 0.05
SPTLC1-201ENST00000262554 ARAP2Q8WZ64 1704 aa15.36■□□□□ 0.05
SPTLC1-201ENST00000262554 PDCP20941 246 aa15.36■□□□□ 0.05
SPTLC1-201ENST00000262554 SCARF1Q14162 830 aa15.36■□□□□ 0.05
SPTLC1-201ENST00000262554 FAM98CQ17RN3 349 aaKnown RBP15.36■□□□□ 0.05
SPTLC1-201ENST00000262554 WASHC4Q2M389 1173 aa15.36■□□□□ 0.05
SPTLC1-201ENST00000262554 Q6ZUG5 572 aa15.36■□□□□ 0.05
SPTLC1-201ENST00000262554 PANK2Q9BZ23 570 aa15.36■□□□□ 0.05
SPTLC1-201ENST00000262554 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.36■□□□□ 0.051e-6■■□□□ 12.5
SPTLC1-201ENST00000262554 DDX60Q8IY21 1712 aaKnown RBP15.36■□□□□ 0.05
SPTLC1-201ENST00000262554 HCLS1P14317 486 aaPredicted RBP15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 TTF1Q15361 905 aaPredicted RBP15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 VPS72Q15906 364 aa15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 TMEM87AQ8NBN3 555 aa15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 OSBP2Q969R2 916 aa15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 NGLY1Q96IV0 654 aa15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 MTMR6Q9Y217 621 aa15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 ZNF652Q9Y2D9 606 aa15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 BCORQ6W2J9 1755 aa15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 FAM177BA6PVY3 158 aa15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 UBAP1LF5GYI3 381 aa15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 KCNQ2O43526 872 aa15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 FGD1P98174 961 aa15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 PUM3Q15397 648 aaKnown RBP15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 LARP1BQ659C4 914 aaKnown RBP15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 ZSCAN25Q6NSZ9 544 aa15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 DHX32Q7L7V1 743 aaKnown RBP15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 USP48Q86UV5 1035 aa15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 APPBP2Q92624 585 aa15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 SYAP1Q96A49 352 aaPredicted RBP15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 C8orf37Q96NL8 207 aa15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 CTNNA3Q9UI47 895 aa15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 NIP7Q9Y221 180 aaKnown RBP eCLIP15.35■□□□□ 0.05
SPTLC1-201ENST00000262554 VPS37CA5D8V6 355 aaPredicted RBP15.34■□□□□ 0.05
SPTLC1-201ENST00000262554 UQCRFS1P1P0C7P4 283 aa15.34■□□□□ 0.05
SPTLC1-201ENST00000262554 MCAMP43121 646 aa15.34■□□□□ 0.05
SPTLC1-201ENST00000262554 STK3Q13188 491 aa15.34■□□□□ 0.05
SPTLC1-201ENST00000262554 STOX1Q6ZVD7 989 aa15.34■□□□□ 0.05
SPTLC1-201ENST00000262554 PROM2Q8N271 834 aa15.34■□□□□ 0.05
SPTLC1-201ENST00000262554 LPIN2Q92539 896 aa15.34■□□□□ 0.05
SPTLC1-201ENST00000262554 RBM27Q9P2N5 1060 aaKnown RBP15.34■□□□□ 0.05
SPTLC1-201ENST00000262554 CSPP1Q1MSJ5 1256 aa15.33■□□□□ 0.05
SPTLC1-201ENST00000262554 CCDC152Q4G0S7 254 aa15.33■□□□□ 0.05
SPTLC1-201ENST00000262554 PI16Q6UXB8 463 aa15.33■□□□□ 0.05
SPTLC1-201ENST00000262554 GTF3C6Q969F1 213 aa15.33■□□□□ 0.05
SPTLC1-201ENST00000262554 MPHOSPH8Q99549 860 aa15.33■□□□□ 0.05
SPTLC1-201ENST00000262554 GDPD2Q9HCC8 539 aa15.33■□□□□ 0.05
SPTLC1-201ENST00000262554 TMEM63CQ9P1W3 806 aa15.33■□□□□ 0.05
SPTLC1-201ENST00000262554 NSFL1CQ9UNZ2 370 aaKnown RBP15.33■□□□□ 0.05
SPTLC1-201ENST00000262554 CNPY2Q9Y2B0 182 aa15.33■□□□□ 0.05
SPTLC1-201ENST00000262554 BCL9LQ86UU0 1499 aa15.33■□□□□ 0.04
SPTLC1-201ENST00000262554 E7EWF7 191 aa15.33■□□□□ 0.04
SPTLC1-201ENST00000262554 NTSR2O95665 410 aa15.33■□□□□ 0.04
SPTLC1-201ENST00000262554 ARID4AP29374 1257 aaPredicted RBP15.33■□□□□ 0.04
SPTLC1-201ENST00000262554 RTL9Q8NET4 1388 aa15.32■□□□□ 0.04
SPTLC1-201ENST00000262554 SLC5A1P13866 664 aa15.32■□□□□ 0.04
SPTLC1-201ENST00000262554 CCDC102BQ68D86 513 aa15.32■□□□□ 0.04
SPTLC1-201ENST00000262554 CLEC4GQ6UXB4 293 aa15.32■□□□□ 0.04
SPTLC1-201ENST00000262554 BRF1Q92994 677 aa15.32■□□□□ 0.04
SPTLC1-201ENST00000262554 FGFR2P21802 821 aa15.31■□□□□ 0.04
SPTLC1-201ENST00000262554 IMMTQ16891 758 aaKnown RBP15.31■□□□□ 0.04
SPTLC1-201ENST00000262554 DTNBO60941 627 aa15.31■□□□□ 0.04
SPTLC1-201ENST00000262554 GADD45BO75293 160 aaPredicted RBP15.31■□□□□ 0.04
SPTLC1-201ENST00000262554 IGHMBP2P38935 993 aaKnown RBP15.31■□□□□ 0.04
SPTLC1-201ENST00000262554 PHKA1P46020 1223 aa15.31■□□□□ 0.04
SPTLC1-201ENST00000262554 EXOSC10Q01780 885 aaKnown RBP15.31■□□□□ 0.04
SPTLC1-201ENST00000262554 HELBQ8NG08 1087 aaPredicted RBP15.31■□□□□ 0.04
SPTLC1-201ENST00000262554 PUS7LQ9H0K6 701 aaKnown RBP15.31■□□□□ 0.04
SPTLC1-201ENST00000262554 MYO5AQ9Y4I1 1855 aaKnown RBP15.31■□□□□ 0.04
SPTLC1-201ENST00000262554 ADD2P35612 726 aa15.3■□□□□ 0.04
SPTLC1-201ENST00000262554 NASPP49321 788 aaPredicted RBP15.3■□□□□ 0.04
SPTLC1-201ENST00000262554 SLC9C2Q5TAH2 1124 aa15.3■□□□□ 0.04
SPTLC1-201ENST00000262554 LRSAM1Q6UWE0 723 aa15.3■□□□□ 0.04
SPTLC1-201ENST00000262554 LINC00116Q8NCU8 138 aa15.3■□□□□ 0.04
SPTLC1-201ENST00000262554 LRRC2Q9BYS8 371 aa15.3■□□□□ 0.04
SPTLC1-201ENST00000262554 SEC31BQ9NQW1 1179 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms