RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 KRT13P13646 458 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 PRPF4BQ13523 1007 aaKnown RBP9.95□□□□□ -0.82
PTCD3-201ENST00000254630 ZSCAN23Q3MJ62 389 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 CNPY2Q9Y2B0 182 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 ZMYM3Q14202 1370 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 ERICH4A6NGS2 130 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 NBPF7P0C2Y1 421 aaPredicted RBP9.95□□□□□ -0.82
PTCD3-201ENST00000254630 KCNG4Q8TDN1 519 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 VTI1AQ96AJ9 217 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 CTAGE1Q96RT6 745 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 EYA3Q99504 573 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 TPTE2Q6XPS3 522 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 DCAF5Q96JK2 942 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 BICC1Q9H694 974 aaKnown RBP9.95□□□□□ -0.82
PTCD3-201ENST00000254630 SYNCQ9H7C4 482 aa9.95□□□□□ -0.82
PTCD3-201ENST00000254630 GOLGA6L9A6NEM1 432 aa9.94□□□□□ -0.82
PTCD3-201ENST00000254630 UVSSAQ2YD98 709 aa9.94□□□□□ -0.82
PTCD3-201ENST00000254630 PARD3Q8TEW0 1356 aa9.94□□□□□ -0.82
PTCD3-201ENST00000254630 GOLGA6L10A0A0M3HER8 536 aa9.94□□□□□ -0.82
PTCD3-201ENST00000254630 COL17A1Q9UMD9 1497 aaPredicted RBP9.94□□□□□ -0.82
PTCD3-201ENST00000254630 NBPF14Q5TI25 921 aa9.94□□□□□ -0.82
PTCD3-201ENST00000254630 USP37Q86T82 979 aa9.94□□□□□ -0.82
PTCD3-201ENST00000254630 RBM28Q9NW13 759 aaKnown RBP9.94□□□□□ -0.82
PTCD3-201ENST00000254630 ATP10AO60312 1499 aa9.94□□□□□ -0.82
PTCD3-201ENST00000254630 LDHBP07195 334 aaKnown RBP9.94□□□□□ -0.82
PTCD3-201ENST00000254630 SNW1Q13573 536 aaKnown RBP9.94□□□□□ -0.82
PTCD3-201ENST00000254630 MIGA1Q8NAN2 632 aa9.94□□□□□ -0.82
PTCD3-201ENST00000254630 POLKQ9UBT6 870 aa9.94□□□□□ -0.82
PTCD3-201ENST00000254630 PHACTR2O75167 634 aa9.93□□□□□ -0.82
PTCD3-201ENST00000254630 GRM1Q13255 1194 aa9.93□□□□□ -0.82
PTCD3-201ENST00000254630 RBM26Q5T8P6 1007 aaKnown RBP9.93□□□□□ -0.82
PTCD3-201ENST00000254630 INCENPQ9NQS7 918 aa9.93□□□□□ -0.82
PTCD3-201ENST00000254630 COMMD10Q9Y6G5 202 aa9.93□□□□□ -0.82
PTCD3-201ENST00000254630 PIK3C2GO75747 1445 aa9.93□□□□□ -0.82
PTCD3-201ENST00000254630 EHBP1Q8NDI1 1231 aa9.93□□□□□ -0.82
PTCD3-201ENST00000254630 RTL1A6NKG5 1358 aa9.93□□□□□ -0.82
PTCD3-201ENST00000254630 LMOD1P29536 600 aaPredicted RBP9.93□□□□□ -0.82
PTCD3-201ENST00000254630 TRAPPC3LQ5T215 181 aa9.93□□□□□ -0.82
PTCD3-201ENST00000254630 TSNARE1Q96NA8 513 aa9.93□□□□□ -0.82
PTCD3-201ENST00000254630 C19orf44Q9H6X5 657 aa9.93□□□□□ -0.82
PTCD3-201ENST00000254630 ZFYVE16Q7Z3T8 1539 aa9.93□□□□□ -0.82
PTCD3-201ENST00000254630 SAP30BPQ9UHR5 308 aaKnown RBP9.93□□□□□ -0.82
PTCD3-201ENST00000254630 GCC2Q8IWJ2 1684 aa9.93□□□□□ -0.82
PTCD3-201ENST00000254630 SPDYE3A6NKU9 549 aa9.93□□□□□ -0.82
PTCD3-201ENST00000254630 B4DLN1 442 aa9.93□□□□□ -0.82
PTCD3-201ENST00000254630 GNPATO15228 680 aa9.93□□□□□ -0.82
PTCD3-201ENST00000254630 MRPL12P52815 198 aaKnown RBP9.93□□□□□ -0.82
PTCD3-201ENST00000254630 IP6K1Q92551 441 aa9.93□□□□□ -0.82
PTCD3-201ENST00000254630 MCM9Q9NXL9 1143 aa9.93□□□□□ -0.82
PTCD3-201ENST00000254630 PABPN1LA6NDY0 278 aaKnown RBP9.92□□□□□ -0.82
PTCD3-201ENST00000254630 FAM13AO94988 1023 aa9.92□□□□□ -0.82
PTCD3-201ENST00000254630 UBE4AQ14139 1066 aa9.92□□□□□ -0.82
PTCD3-201ENST00000254630 CWF19L2Q2TBE0 894 aaKnown RBP9.92□□□□□ -0.82
PTCD3-201ENST00000254630 BTG4Q9NY30 223 aa9.92□□□□□ -0.82
PTCD3-201ENST00000254630 MRVI1Q9Y6F6 885 aa9.92□□□□□ -0.82
PTCD3-201ENST00000254630 EDC4Q6P2E9 1401 aaKnown RBP9.92□□□□□ -0.82
PTCD3-201ENST00000254630 TNNI2P48788 182 aa9.92□□□□□ -0.82
PTCD3-201ENST00000254630 HLTFQ14527 1009 aaKnown RBP eCLIP9.92□□□□□ -0.82
PTCD3-201ENST00000254630 ANO6Q4KMQ2 910 aa9.92□□□□□ -0.82
PTCD3-201ENST00000254630 CEP85Q6P2H3 762 aa9.92□□□□□ -0.82
PTCD3-201ENST00000254630 LRRC45Q96CN5 670 aa9.92□□□□□ -0.82
PTCD3-201ENST00000254630 JADE2Q9NQC1 790 aa9.92□□□□□ -0.82
PTCD3-201ENST00000254630 ASIC1P78348 528 aa9.92□□□□□ -0.82
PTCD3-201ENST00000254630 SMC1AQ14683 1233 aaKnown RBP9.92□□□□□ -0.82
PTCD3-201ENST00000254630 CEP135Q66GS9 1140 aa9.92□□□□□ -0.82
PTCD3-201ENST00000254630 C16orf45Q96MC5 204 aaPredicted RBP9.92□□□□□ -0.82
PTCD3-201ENST00000254630 DENND2AQ9ULE3 1009 aa9.92□□□□□ -0.82
PTCD3-201ENST00000254630 N4BP3O15049 544 aa9.92□□□□□ -0.82
PTCD3-201ENST00000254630 HOMER2Q9NSB8 354 aa9.92□□□□□ -0.82
PTCD3-201ENST00000254630 CCDC171Q6TFL3 1326 aa9.92□□□□□ -0.82
PTCD3-201ENST00000254630 UBASH3AP57075 661 aa9.92□□□□□ -0.82
PTCD3-201ENST00000254630 ZNF354CQ86Y25 554 aa9.92□□□□□ -0.82
PTCD3-201ENST00000254630 MRPS27Q92552 414 aaKnown RBP9.92□□□□□ -0.82
PTCD3-201ENST00000254630 USP48Q86UV5 1035 aa9.91□□□□□ -0.82
PTCD3-201ENST00000254630 SOS1Q07889 1333 aaPredicted RBP9.91□□□□□ -0.82
PTCD3-201ENST00000254630 SBNO2Q9Y2G9 1366 aa9.91□□□□□ -0.82
PTCD3-201ENST00000254630 GIMAP6Q6P9H5 292 aa9.91□□□□□ -0.82
PTCD3-201ENST00000254630 LRSAM1Q6UWE0 723 aa9.91□□□□□ -0.82
PTCD3-201ENST00000254630 DHX58Q96C10 678 aa9.91□□□□□ -0.82
PTCD3-201ENST00000254630 HELLSQ9NRZ9 838 aa9.91□□□□□ -0.82
PTCD3-201ENST00000254630 ZMYM4Q5VZL5 1548 aa9.91□□□□□ -0.82
PTCD3-201ENST00000254630 PARP1P09874 1014 aaKnown RBP9.91□□□□□ -0.82
PTCD3-201ENST00000254630 APOBRQ0VD83 1088 aa9.91□□□□□ -0.82
PTCD3-201ENST00000254630 CTR9Q6PD62 1173 aa9.91□□□□□ -0.82
PTCD3-201ENST00000254630 MAATS1Q7Z4T9 603 aa9.91□□□□□ -0.82
PTCD3-201ENST00000254630 JDP2Q8WYK2 163 aa9.91□□□□□ -0.82
PTCD3-201ENST00000254630 ZC3H12CQ9C0D7 883 aaKnown RBP9.91□□□□□ -0.82
PTCD3-201ENST00000254630 F13A1P00488 732 aa9.91□□□□□ -0.82
PTCD3-201ENST00000254630 MARCKSP29966 332 aaPredicted RBP9.91□□□□□ -0.82
PTCD3-201ENST00000254630 MCM7P33993 719 aa9.91□□□□□ -0.82
PTCD3-201ENST00000254630 CREB3L3Q68CJ9 461 aa9.91□□□□□ -0.82
PTCD3-201ENST00000254630 RUFY3Q7L099 469 aa9.91□□□□□ -0.82
PTCD3-201ENST00000254630 SBNO1A3KN83 1393 aa9.91□□□□□ -0.82
PTCD3-201ENST00000254630 TMEM110-MUSTN1A8MSY1 372 aa9.91□□□□□ -0.82
PTCD3-201ENST00000254630 CALML3P27482 149 aa9.91□□□□□ -0.82
PTCD3-201ENST00000254630 CKAP4Q07065 602 aaKnown RBP9.91□□□□□ -0.82
PTCD3-201ENST00000254630 PUS7Q96PZ0 661 aaKnown RBP9.91□□□□□ -0.82
PTCD3-201ENST00000254630 MICALCLQ6ZW33 695 aa9.9□□□□□ -0.82
PTCD3-201ENST00000254630 HELBQ8NG08 1087 aaPredicted RBP9.9□□□□□ -0.82
PTCD3-201ENST00000254630 EYA1Q99502 592 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 147.7 ms