RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 USP17L3A6NCW0 530 aa28.83■■■□□ 2.21
LSM4-201ENST00000252816 USP17L4A6NCW7 530 aa28.83■■■□□ 2.21
LSM4-201ENST00000252816 PLIN1O60240 522 aa28.83■■■□□ 2.21
LSM4-201ENST00000252816 EGFRP00533 1210 aa28.83■■■□□ 2.21
LSM4-201ENST00000252816 TRIM27P14373 513 aa28.83■■■□□ 2.21
LSM4-201ENST00000252816 USP17L1Q7RTZ2 530 aa28.83■■■□□ 2.21
LSM4-201ENST00000252816 RIPOR2Q9Y4F9 1068 aa28.83■■■□□ 2.21
LSM4-201ENST00000252816 PSME4Q14997 1843 aa28.83■■■□□ 2.21
LSM4-201ENST00000252816 INTS3Q68E01 1043 aaKnown RBP28.82■■■□□ 2.2
LSM4-201ENST00000252816 FRAT1Q92837 279 aaPredicted RBP28.82■■■□□ 2.2
LSM4-201ENST00000252816 GMLQ99445 158 aa28.82■■■□□ 2.2
LSM4-201ENST00000252816 PGAP2Q9UHJ9 254 aa28.82■■■□□ 2.2
LSM4-201ENST00000252816 ZNF609O15014 1411 aa28.82■■■□□ 2.2
LSM4-201ENST00000252816 IPO8O15397 1037 aaKnown RBP28.81■■■□□ 2.2
LSM4-201ENST00000252816 UBTFL1P0CB47 393 aaPredicted RBP28.81■■■□□ 2.2
LSM4-201ENST00000252816 ATF7IPQ6VMQ6 1270 aa28.81■■■□□ 2.2
LSM4-201ENST00000252816 C15orf52Q6ZUT6 534 aaKnown RBP28.81■■■□□ 2.2
LSM4-201ENST00000252816 KLHDC4Q8TBB5 520 aa28.81■■■□□ 2.2
LSM4-201ENST00000252816 KLRG1Q96E93 195 aa28.81■■■□□ 2.2
LSM4-201ENST00000252816 MEIS3Q99687 375 aa28.81■■■□□ 2.2
LSM4-201ENST00000252816 CREBZFQ9NS37 354 aa28.81■■■□□ 2.2
LSM4-201ENST00000252816 FMR1Q06787 632 aaKnown RBP eCLIP28.8■■■□□ 2.2
LSM4-201ENST00000252816 TBC1D10BQ4KMP7 808 aaPredicted RBP28.8■■■□□ 2.2
LSM4-201ENST00000252816 LRRC24Q50LG9 513 aa28.8■■■□□ 2.2
LSM4-201ENST00000252816 AGBL3Q8NEM8 1001 aa28.8■■■□□ 2.2
LSM4-201ENST00000252816 MXD3Q9BW11 206 aa28.8■■■□□ 2.2
LSM4-201ENST00000252816 DACT2Q5SW24 774 aa28.79■■■□□ 2.2
LSM4-201ENST00000252816 ZC3H15Q8WU90 426 aaKnown RBP28.79■■■□□ 2.2
LSM4-201ENST00000252816 CD209Q9NNX6 404 aa28.79■■■□□ 2.2
LSM4-201ENST00000252816 TRAF5O00463 557 aa28.78■■■□□ 2.2
LSM4-201ENST00000252816 RFX5P48382 616 aaPredicted RBP28.78■■■□□ 2.2
LSM4-201ENST00000252816 RBM26Q5T8P6 1007 aaKnown RBP28.78■■■□□ 2.2
LSM4-201ENST00000252816 LRRFIP2Q9Y608 721 aaKnown RBP28.78■■■□□ 2.2
LSM4-201ENST00000252816 ZNF280AP59817 542 aaPredicted RBP28.77■■■□□ 2.2
LSM4-201ENST00000252816 STRIP1Q5VSL9 837 aa28.77■■■□□ 2.2
LSM4-201ENST00000252816 FBXW7Q969H0 707 aa28.77■■■□□ 2.2
LSM4-201ENST00000252816 ZNF646O15015 1829 aaPredicted RBP28.77■■■□□ 2.2
LSM4-201ENST00000252816 MROH5Q6ZUA9 1318 aa28.76■■■□□ 2.19
LSM4-201ENST00000252816 TMEM88BA6NKF7 163 aa28.76■■■□□ 2.19
LSM4-201ENST00000252816 CLUAP1Q96AJ1 413 aa28.76■■■□□ 2.19
LSM4-201ENST00000252816 UBE4AQ14139 1066 aa28.75■■■□□ 2.19
LSM4-201ENST00000252816 KIF4BQ2VIQ3 1234 aa28.75■■■□□ 2.19
LSM4-201ENST00000252816 TTLL5Q6EMB2 1281 aa28.75■■■□□ 2.19
LSM4-201ENST00000252816 GLIS2Q9BZE0 524 aaPredicted RBP28.75■■■□□ 2.19
LSM4-201ENST00000252816 USP17L8P0C7I0 530 aa28.74■■■□□ 2.19
LSM4-201ENST00000252816 GTF2IP78347 998 aa28.74■■■□□ 2.19
LSM4-201ENST00000252816 PTPN12Q05209 780 aaKnown RBP28.73■■■□□ 2.19
LSM4-201ENST00000252816 METTL24Q5JXM2 366 aa28.73■■■□□ 2.19
LSM4-201ENST00000252816 ZKSCAN2Q63HK3 967 aa28.73■■■□□ 2.19
LSM4-201ENST00000252816 ZNF804AQ7Z570 1209 aa28.73■■■□□ 2.19
LSM4-201ENST00000252816 VGLL2Q8N8G2 317 aa28.73■■■□□ 2.19
LSM4-201ENST00000252816 IL1R1P14778 569 aa28.72■■■□□ 2.19
LSM4-201ENST00000252816 GNAI3P08754 354 aa28.71■■■□□ 2.19
LSM4-201ENST00000252816 JMYQ8N9B5 988 aa28.71■■■□□ 2.19
LSM4-201ENST00000252816 MKRN1Q9UHC7 482 aaKnown RBP28.71■■■□□ 2.19
LSM4-201ENST00000252816 HDAC5Q9UQL6 1122 aa28.71■■■□□ 2.19
LSM4-201ENST00000252816 ASTN2O75129 1339 aaPredicted RBP28.7■■■□□ 2.19
LSM4-201ENST00000252816 MYO3BQ8WXR4 1341 aa28.7■■■□□ 2.19
LSM4-201ENST00000252816 PCNTO95613 3336 aa28.7■■■□□ 2.19
LSM4-201ENST00000252816 EYA2O00167 538 aa28.7■■■□□ 2.18
LSM4-201ENST00000252816 GYG1P46976 350 aa28.7■■■□□ 2.18
LSM4-201ENST00000252816 CST9Q5W186 159 aa28.7■■■□□ 2.18
LSM4-201ENST00000252816 TMEM57Q8N5G2 664 aa28.7■■■□□ 2.18
LSM4-201ENST00000252816 MYOZ2Q9NPC6 264 aa28.7■■■□□ 2.18
LSM4-201ENST00000252816 PDE8BO95263 885 aa28.69■■■□□ 2.18
LSM4-201ENST00000252816 DLK2Q6UY11 383 aa28.69■■■□□ 2.18
LSM4-201ENST00000252816 CDC37L1Q7L3B6 337 aa28.69■■■□□ 2.18
LSM4-201ENST00000252816 USP48Q86UV5 1035 aa28.69■■■□□ 2.18
LSM4-201ENST00000252816 FAM84BQ96KN1 310 aaPredicted RBP28.69■■■□□ 2.18
LSM4-201ENST00000252816 ATG9AQ7Z3C6 839 aa28.68■■■□□ 2.18
LSM4-201ENST00000252816 CERS5Q8N5B7 392 aa28.68■■■□□ 2.18
LSM4-201ENST00000252816 CNTNAP1P78357 1384 aa28.67■■■□□ 2.18
LSM4-201ENST00000252816 HIBADHP31937 336 aaKnown RBP28.67■■■□□ 2.18
LSM4-201ENST00000252816 SCARF1Q14162 830 aa28.67■■■□□ 2.18
LSM4-201ENST00000252816 SIL1Q9H173 461 aa28.67■■■□□ 2.18
LSM4-201ENST00000252816 GGA3Q9NZ52 723 aa28.67■■■□□ 2.18
LSM4-201ENST00000252816 JAG2Q9Y219 1238 aa28.67■■■□□ 2.18
LSM4-201ENST00000252816 KRT26Q7Z3Y9 468 aa28.66■■■□□ 2.18
LSM4-201ENST00000252816 KIAA0825Q8IV33 1275 aa28.66■■■□□ 2.18
LSM4-201ENST00000252816 TDRD7Q8NHU6 1098 aaKnown RBP28.66■■■□□ 2.18
LSM4-201ENST00000252816 PA2G4Q9UQ80 394 aaKnown RBP28.66■■■□□ 2.18
LSM4-201ENST00000252816 RLBP1P12271 317 aa28.65■■■□□ 2.18
LSM4-201ENST00000252816 OGFOD1Q8N543 542 aa28.65■■■□□ 2.18
LSM4-201ENST00000252816 DCPSQ96C86 337 aaKnown RBP28.65■■■□□ 2.18
LSM4-201ENST00000252816 TRPM7Q96QT4 1865 aa28.65■■■□□ 2.18
LSM4-201ENST00000252816 ADM5C9JUS6 153 aa28.64■■■□□ 2.18
LSM4-201ENST00000252816 SASH1O94885 1247 aa28.64■■■□□ 2.18
LSM4-201ENST00000252816 CELF2O95319 508 aaKnown RBP28.64■■■□□ 2.18
LSM4-201ENST00000252816 FGFR2P21802 821 aa28.64■■■□□ 2.18
LSM4-201ENST00000252816 FBXO33Q7Z6M2 555 aa28.64■■■□□ 2.18
LSM4-201ENST00000252816 ABT1Q9ULW3 272 aaKnown RBP28.64■■■□□ 2.18
LSM4-201ENST00000252816 POLR2AP24928 1970 aaKnown RBP28.64■■■□□ 2.17
LSM4-201ENST00000252816 RASSF10A6NK89 507 aa28.63■■■□□ 2.17
LSM4-201ENST00000252816 CIAO1O76071 339 aa28.63■■■□□ 2.17
LSM4-201ENST00000252816 NBPF9Q3BBW0 867 aa28.63■■■□□ 2.17
LSM4-201ENST00000252816 ANGEL2Q5VTE6 544 aaKnown RBP28.63■■■□□ 2.17
LSM4-201ENST00000252816 DZIP1LQ8IYY4 767 aaKnown RBP28.63■■■□□ 2.17
LSM4-201ENST00000252816 COPRSQ9NQ92 184 aa28.63■■■□□ 2.17
LSM4-201ENST00000252816 FBXO3Q9UK99 471 aa28.63■■■□□ 2.17
LSM4-201ENST00000252816 GNAI2P04899 355 aa28.62■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms