RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 SLC52A2Q9HAB3 445 aa16.43■□□□□ 0.22
USH1C-201ENST00000005226 PCDHA7Q9UN72 937 aa16.43■□□□□ 0.22
USH1C-201ENST00000005226 E7EWF7 191 aa16.42■□□□□ 0.22
USH1C-201ENST00000005226 MRFAP1L1Q96HT8 127 aa16.42■□□□□ 0.22
USH1C-201ENST00000005226 SDF4Q9BRK5 362 aa16.42■□□□□ 0.22
USH1C-201ENST00000005226 PDIA3P30101 505 aaKnown RBP16.42■□□□□ 0.22
USH1C-201ENST00000005226 CDC25BP30305 580 aa16.42■□□□□ 0.22
USH1C-201ENST00000005226 HAND2P61296 217 aa16.42■□□□□ 0.22
USH1C-201ENST00000005226 EXOSC10Q01780 885 aaKnown RBP16.42■□□□□ 0.22
USH1C-201ENST00000005226 SARM1Q6SZW1 724 aa16.42■□□□□ 0.22
USH1C-201ENST00000005226 GTPBP4Q9BZE4 634 aaKnown RBP16.42■□□□□ 0.22
USH1C-201ENST00000005226 FDPSP14324 419 aaKnown RBP16.41■□□□□ 0.22
USH1C-201ENST00000005226 FAM160A1Q05DH4 1040 aa16.41■□□□□ 0.22
USH1C-201ENST00000005226 NAA16Q6N069 864 aaPredicted RBP16.41■□□□□ 0.22
USH1C-201ENST00000005226 LRP10Q7Z4F1 713 aa16.41■□□□□ 0.22
USH1C-201ENST00000005226 PAG1Q9NWQ8 432 aa16.41■□□□□ 0.22
USH1C-201ENST00000005226 NDUFA8P51970 172 aa16.41■□□□□ 0.22
USH1C-201ENST00000005226 HSP90AB3PQ58FF7 597 aa16.41■□□□□ 0.22
USH1C-201ENST00000005226 CLIC4Q9Y696 253 aa16.41■□□□□ 0.22
USH1C-201ENST00000005226 HSPD1P10809 573 aaKnown RBP16.4■□□□□ 0.22
USH1C-201ENST00000005226 RAPGEF4Q8WZA2 1011 aa16.4■□□□□ 0.22
USH1C-201ENST00000005226 LLPHQ9BRT6 129 aaKnown RBP16.4■□□□□ 0.22
USH1C-201ENST00000005226 ANO10Q9NW15 660 aa16.4■□□□□ 0.22
USH1C-201ENST00000005226 OGFRQ9NZT2 677 aa16.4■□□□□ 0.22
USH1C-201ENST00000005226 KIF13AQ9H1H9 1805 aa16.4■□□□□ 0.22
USH1C-201ENST00000005226 RBM6P78332 1123 aaKnown RBP16.4■□□□□ 0.22
USH1C-201ENST00000005226 DPCR1Q3MIW9 517 aa16.4■□□□□ 0.22
USH1C-201ENST00000005226 LRRC24Q50LG9 513 aa16.4■□□□□ 0.22
USH1C-201ENST00000005226 NBPF11Q86T75 865 aa16.4■□□□□ 0.22
USH1C-201ENST00000005226 CTAGE5O15320 804 aa16.39■□□□□ 0.22
USH1C-201ENST00000005226 KMT5BQ4FZB7 885 aa16.39■□□□□ 0.22
USH1C-201ENST00000005226 NYAP1Q6ZVC0 841 aa16.39■□□□□ 0.22
USH1C-201ENST00000005226 ZNF396Q96N95 335 aaPredicted RBP16.39■□□□□ 0.22
USH1C-201ENST00000005226 NCAPD2Q15021 1401 aa16.39■□□□□ 0.21
USH1C-201ENST00000005226 RABL6Q3YEC7 729 aaPredicted RBP16.39■□□□□ 0.21
USH1C-201ENST00000005226 ATG9AQ7Z3C6 839 aa16.39■□□□□ 0.21
USH1C-201ENST00000005226 FMR1NBQ8N0W7 255 aaPredicted RBP16.39■□□□□ 0.21
USH1C-201ENST00000005226 CCAR2Q8N163 923 aaKnown RBP16.39■□□□□ 0.21
USH1C-201ENST00000005226 FEZ1Q99689 392 aa16.39■□□□□ 0.21
USH1C-201ENST00000005226 M0R2C6 588 aa16.39■□□□□ 0.21
USH1C-201ENST00000005226 CAVIN2O95810 425 aa16.39■□□□□ 0.21
USH1C-201ENST00000005226 ELF2Q15723 593 aa16.39■□□□□ 0.21
USH1C-201ENST00000005226 PTPN21Q16825 1174 aa16.39■□□□□ 0.21
USH1C-201ENST00000005226 CEP57L1Q8IYX8 460 aa16.39■□□□□ 0.21
USH1C-201ENST00000005226 KDM6AO15550 1401 aaPredicted RBP16.38■□□□□ 0.21
USH1C-201ENST00000005226 SMC2O95347 1197 aa16.38■□□□□ 0.21
USH1C-201ENST00000005226 PHKG2P15735 406 aa16.38■□□□□ 0.21
USH1C-201ENST00000005226 LRRN4CLQ8ND94 238 aa16.38■□□□□ 0.21
USH1C-201ENST00000005226 CGNQ9P2M7 1197 aaKnown RBP16.38■□□□□ 0.21
USH1C-201ENST00000005226 DDX41Q9UJV9 622 aaKnown RBP16.38■□□□□ 0.21
USH1C-201ENST00000005226 USP54Q70EL1 1684 aa16.38■□□□□ 0.21
USH1C-201ENST00000005226 MAST3O60307 1309 aa16.38■□□□□ 0.21
USH1C-201ENST00000005226 FKBP4Q02790 459 aaKnown RBP eCLIP16.38■□□□□ 0.21
USH1C-201ENST00000005226 SF3A1Q15459 793 aaKnown RBP16.38■□□□□ 0.21
USH1C-201ENST00000005226 ZNF771Q7L3S4 317 aaPredicted RBP16.38■□□□□ 0.21
USH1C-201ENST00000005226 TTC5Q8N0Z6 440 aa16.38■□□□□ 0.21
USH1C-201ENST00000005226 DDX17Q92841 729 aaKnown RBP16.38■□□□□ 0.21
USH1C-201ENST00000005226 PUS3Q9BZE2 481 aaKnown RBP16.38■□□□□ 0.21
USH1C-201ENST00000005226 XPO4Q9C0E2 1151 aaKnown RBP16.38■□□□□ 0.21
USH1C-201ENST00000005226 IFNKQ9P0W0 207 aa16.38■□□□□ 0.21
USH1C-201ENST00000005226 HMGB1P09429 215 aaKnown RBP16.37■□□□□ 0.21
USH1C-201ENST00000005226 SNRPA1P09661 255 aaKnown RBP16.37■□□□□ 0.21
USH1C-201ENST00000005226 CASP7P55210 303 aa16.37■□□□□ 0.21
USH1C-201ENST00000005226 FOXO4P98177 505 aa16.37■□□□□ 0.21
USH1C-201ENST00000005226 TMC6Q7Z403 805 aa16.37■□□□□ 0.21
USH1C-201ENST00000005226 KIF18AQ8NI77 898 aa16.37■□□□□ 0.21
USH1C-201ENST00000005226 MRPS27Q92552 414 aaKnown RBP16.37■□□□□ 0.21
USH1C-201ENST00000005226 CARMIL3Q8ND23 1372 aa16.37■□□□□ 0.21
USH1C-201ENST00000005226 MRC1P22897 1456 aa16.37■□□□□ 0.21
USH1C-201ENST00000005226 STK38Q15208 465 aa16.37■□□□□ 0.21
USH1C-201ENST00000005226 ZMYM1Q5SVZ6 1142 aa16.37■□□□□ 0.21
USH1C-201ENST00000005226 CCDC85AQ96PX6 553 aaPredicted RBP16.37■□□□□ 0.21
USH1C-201ENST00000005226 SH3TC1Q8TE82 1336 aa16.37■□□□□ 0.21
USH1C-201ENST00000005226 SYCP1Q15431 976 aa16.36■□□□□ 0.21
USH1C-201ENST00000005226 TTLL7Q6ZT98 887 aa16.36■□□□□ 0.21
USH1C-201ENST00000005226 KRT28Q7Z3Y7 464 aa16.36■□□□□ 0.21
USH1C-201ENST00000005226 OSBP2Q969R2 916 aa16.36■□□□□ 0.21
USH1C-201ENST00000005226 SALL1Q9NSC2 1324 aa16.36■□□□□ 0.21
USH1C-201ENST00000005226 IFIT1P09914 478 aaKnown RBP16.36■□□□□ 0.21
USH1C-201ENST00000005226 FBXO38Q6PIJ6 1188 aa16.36■□□□□ 0.21
USH1C-201ENST00000005226 ST7Q9NRC1 585 aa16.36■□□□□ 0.21
USH1C-201ENST00000005226 ERBB3P21860 1342 aa16.36■□□□□ 0.21
USH1C-201ENST00000005226 C5P01031 1676 aa16.35■□□□□ 0.21
USH1C-201ENST00000005226 E4F1Q66K89 784 aaPredicted RBP16.35■□□□□ 0.21
USH1C-201ENST00000005226 ARMCX5Q6P1M9 558 aa16.35■□□□□ 0.21
USH1C-201ENST00000005226 LINC00301Q8NCQ3 95 aa16.35■□□□□ 0.21
USH1C-201ENST00000005226 CABLES1Q8TDN4 633 aa16.35■□□□□ 0.21
USH1C-201ENST00000005226 DSCC1Q9BVC3 393 aa16.35■□□□□ 0.21
USH1C-201ENST00000005226 HELLSQ9NRZ9 838 aa16.35■□□□□ 0.21
USH1C-201ENST00000005226 CSB-PGBD3P0DP91 1061 aa16.35■□□□□ 0.21
USH1C-201ENST00000005226 AGXT2Q9BYV1 514 aa16.35■□□□□ 0.21
USH1C-201ENST00000005226 KIAA1468Q9P260 1216 aa16.35■□□□□ 0.21
USH1C-201ENST00000005226 KIF28PB7ZC32 967 aa16.34■□□□□ 0.21
USH1C-201ENST00000005226 RNF113AO15541 343 aaKnown RBP16.34■□□□□ 0.21
USH1C-201ENST00000005226 NEMFO60524 1076 aa16.34■□□□□ 0.21
USH1C-201ENST00000005226 TATP17735 454 aaPredicted RBP16.34■□□□□ 0.21
USH1C-201ENST00000005226 MARCKSP29966 332 aaPredicted RBP16.34■□□□□ 0.21
USH1C-201ENST00000005226 CHRNA2Q15822 529 aa16.34■□□□□ 0.21
USH1C-201ENST00000005226 SYT10Q6XYQ8 523 aa16.34■□□□□ 0.21
USH1C-201ENST00000005226 DENND2AQ9ULE3 1009 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms