RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 TGIF2LXQ8IUE1 241 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 GTPBP8Q8N3Z3 284 aaPredicted RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 LINC00337Q8N6G1 96 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 TEX9Q8N6V9 391 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 EIF1ADQ8N9N8 165 aaKnown RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 OR2M7Q8NG81 312 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 OR7G2Q8NG99 324 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 OR8K3Q8NH51 312 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 OR5K2Q8NHB8 316 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 KCNG3Q8TAE7 436 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 RAB3IL1Q8TBN0 382 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 ACTL9Q8TC94 416 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 OR51E1Q8TCB6 317 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 SLC2A14Q8TDB8 520 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 RXFP4Q8TDU9 374 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 ACMSDQ8TDX5 336 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 APH1BQ8WW43 257 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 ELMO1Q92556 727 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 NRGNQ92686 78 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 RPEQ96AT9 228 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 TMEM159Q96B96 161 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 CCDC126Q96EE4 140 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 SGTBQ96EQ0 304 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 SMARCD1Q96GM5 515 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 BTN2A3PQ96KV6 586 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 IFT74Q96LB3 600 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 RDH12Q96NR8 316 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 GPR82Q96P67 336 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 CSPG4P5Q96PW8 444 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 TEAD3Q99594 435 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 KCNS3Q9BQ31 491 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 UQCC2Q9BRT2 126 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 C1orf50Q9BV19 199 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 SLIRPQ9GZT3 109 aaKnown RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 TOLLIPQ9H0E2 274 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 DSN1Q9H410 356 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 METTL7AQ9H8H3 244 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 ANKRA2Q9H9E1 313 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 RDH14Q9HBH5 336 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 RETNQ9HD89 108 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 ACP6Q9NPH0 428 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 MED4Q9NPJ6 270 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 RRAGDQ9NQL2 400 aaPredicted RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 DYRK4Q9NR20 520 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 RGS18Q9NS28 235 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 ASF1BQ9NVP2 202 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 CLN6Q9NWW5 311 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 HRASLS2Q9NWW9 162 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 HYPKQ9NX55 129 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 SLC39A1Q9NY26 324 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 IL37Q9NZH6 218 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 CCDC59Q9P031 241 aaKnown RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 PSMC3IPQ9P2W1 217 aaPredicted RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 CLN8Q9UBY8 286 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 LGALS13Q9UHV8 139 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 TRMT112Q9UI30 125 aaKnown RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 RWDD2AQ9UIY3 292 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 SH3BGRL2Q9UJC5 107 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 BLOC1S6Q9UL45 172 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 SNX6Q9UNH7 406 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 ZNF443Q9Y2A4 671 aaPredicted RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 SLC17A4Q9Y2C5 497 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 RCL1Q9Y2P8 373 aaKnown RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 ASB3Q9Y575 518 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 NACADO15069 1562 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 TSPOAP1O95153 1857 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 DOCK6Q96HP0 2047 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 DYSFO75923 2080 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 DIDO1Q9BTC0 2240 aaKnown RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 FAM240BA0A1B0GVZ2 78 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 TMEM72A0PK05 275 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 XKRY2A2RUG3 117 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 GGTLC3B5MD39 225 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 ANKRD65E5RJM6 399 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 LINC01619G3V211 115 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 M0R1X1 148 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 M0R3G1 203 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 UPK1AO00322 258 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 NME4O00746 187 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 NDUFAB1O14561 156 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 DYNC1I1O14576 645 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 SLC9A3R1O14745 358 aaPredicted RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 FFAR1O14842 300 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 PSPHP1O15172 72 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 CLOCKO15516 846 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 CTAG2O75638 210 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 GATBO75879 557 aaKnown RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 OR2J3O76001 311 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 OR2F2O95006 317 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 S1PR2O95136 353 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 CDS2O95674 445 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 TGM6O95932 706 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 CD160O95971 181 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 HPRT1P00492 218 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 SERPINA3P01011 423 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 IGHV3-53P01767 116 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 IGHMP01871 453 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 HBE1P02100 147 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 IGKV1-16P04430 117 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 CTSGP08311 255 aa0.04□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms