RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 FSTL3O95633 263 aa16.18■□□□□ 0.18
CLN3-260ENST00000637578 PNPP00491 289 aa16.18■□□□□ 0.18
CLN3-260ENST00000637578 MTNR1AP48039 350 aa16.18■□□□□ 0.18
CLN3-260ENST00000637578 SLC6A9P48067 706 aa16.18■□□□□ 0.18
CLN3-260ENST00000637578 PRSS12P56730 875 aa16.18■□□□□ 0.18
CLN3-260ENST00000637578 BTG1P62324 171 aa16.18■□□□□ 0.18
CLN3-260ENST00000637578 ZNF91Q05481 1191 aa16.18■□□□□ 0.18
CLN3-260ENST00000637578 POU4F2Q12837 409 aa16.18■□□□□ 0.18
CLN3-260ENST00000637578 MAB21L1Q13394 359 aa16.18■□□□□ 0.18
CLN3-260ENST00000637578 C1orf229Q6ZS94 237 aaPredicted RBP16.18■□□□□ 0.18
CLN3-260ENST00000637578 THEM6Q8WUY1 208 aa16.18■□□□□ 0.18
CLN3-260ENST00000637578 TMEM158Q8WZ71 300 aa16.18■□□□□ 0.18
CLN3-260ENST00000637578 SPSB4Q96A44 273 aa16.18■□□□□ 0.18
CLN3-260ENST00000637578 Q96MT0 163 aa16.18■□□□□ 0.18
CLN3-260ENST00000637578 AMBNQ9NP70 447 aa16.18■□□□□ 0.18
CLN3-260ENST00000637578 CENPMQ9NSP4 180 aa16.18■□□□□ 0.18
CLN3-260ENST00000637578 COPS3Q9UNS2 423 aa16.18■□□□□ 0.18
CLN3-260ENST00000637578 HSPE1-MOB4S4R3N1 261 aa16.18■□□□□ 0.18
CLN3-260ENST00000637578 CD300LBA8K4G0 201 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 RNF212BA8MTL3 300 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 HLA-DPB1P04440 258 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 LYNP07948 512 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 ALOX5APP20292 161 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 SRP14P37108 136 aaKnown RBP16.17■□□□□ 0.18
CLN3-260ENST00000637578 SLC15A1P46059 708 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 HSPA13P48723 471 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 PRKXP51817 358 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 GRB2P62993 217 aaKnown RBP16.17■□□□□ 0.18
CLN3-260ENST00000637578 SMN1Q16637 294 aaKnown RBP16.17■□□□□ 0.18
CLN3-260ENST00000637578 GLYATL3Q5SZD4 288 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 FAHD2BQ6P2I3 314 aaPredicted RBP16.17■□□□□ 0.18
CLN3-260ENST00000637578 MRPL21Q7Z2W9 205 aaKnown RBP16.17■□□□□ 0.18
CLN3-260ENST00000637578 SLC35F2Q8IXU6 374 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 SPICQ8N5J4 248 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 RNFT2Q96EX2 444 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 FAHD2AQ96GK7 314 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 PATZ1Q9HBE1 687 aaKnown RBP16.17■□□□□ 0.18
CLN3-260ENST00000637578 LAMP5Q9UJQ1 280 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 POLR3KQ9Y2Y1 108 aaPredicted RBP16.17■□□□□ 0.18
CLN3-260ENST00000637578 PPIAL4EA0A075B759 164 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 PPIAL4CA0A0B4J2A2 164 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 SNTNA6NMZ2 147 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 PPIAL4DF5H284 164 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 AVPP01185 164 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 PPIAL4FP0DN26 164 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 GATA3P23771 443 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 ATP6V1E1P36543 226 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 PMELP40967 661 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 CD200P41217 278 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 TAF13Q15543 124 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 SNCBQ16143 134 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 PRSS45Q7RTY3 260 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 KLHL36Q8N4N3 616 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 RFLNBQ8N5W9 214 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 OR2AE1Q8NHA4 323 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 ZNF420Q8TAQ5 688 aaPredicted RBP16.17■□□□□ 0.18
CLN3-260ENST00000637578 SPRYD4Q8WW59 207 aaPredicted RBP16.17■□□□□ 0.18
CLN3-260ENST00000637578 TMPRSS13Q9BYE2 586 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 SLC22A4Q9H015 551 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 OPA3Q9H6K4 179 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 UBAP1Q9NZ09 502 aa16.17■□□□□ 0.18
CLN3-260ENST00000637578 A0A0G2JMP0 313 aa16.16■□□□□ 0.18
CLN3-260ENST00000637578 A0A0X1KG70 313 aa16.16■□□□□ 0.18
CLN3-260ENST00000637578 F5H0A9 414 aaPredicted RBP16.16■□□□□ 0.18
CLN3-260ENST00000637578 J3QLI3 93 aa16.16■□□□□ 0.18
CLN3-260ENST00000637578 PTBP3O95758 552 aaKnown RBP16.16■□□□□ 0.18
CLN3-260ENST00000637578 DBTP11182 482 aaKnown RBP16.16■□□□□ 0.18
CLN3-260ENST00000637578 CPT2P23786 658 aa16.16■□□□□ 0.18
CLN3-260ENST00000637578 ZFP36P26651 326 aaKnown RBP16.16■□□□□ 0.18
CLN3-260ENST00000637578 MDH2P40926 338 aaKnown RBP16.16■□□□□ 0.18
CLN3-260ENST00000637578 OPRL1P41146 370 aa16.16■□□□□ 0.18
CLN3-260ENST00000637578 THAP5Q7Z6K1 395 aa16.16■□□□□ 0.18
CLN3-260ENST00000637578 OR4M2Q8NGB6 313 aa16.16■□□□□ 0.18
CLN3-260ENST00000637578 Q8TCH9 128 aa16.16■□□□□ 0.18
CLN3-260ENST00000637578 FBLIM1Q8WUP2 373 aa16.16■□□□□ 0.18
CLN3-260ENST00000637578 ERGIC1Q969X5 290 aa16.16■□□□□ 0.18
CLN3-260ENST00000637578 TTTY10Q9BZA0 68 aa16.16■□□□□ 0.18
CLN3-260ENST00000637578 MRPL15Q9P015 296 aaKnown RBP16.16■□□□□ 0.18
CLN3-260ENST00000637578 TMEM14AQ9Y6G1 99 aa16.16■□□□□ 0.18
CLN3-260ENST00000637578 PRR32B1ATL7 298 aa16.15■□□□□ 0.18
CLN3-260ENST00000637578 XRCC2O43543 280 aa16.15■□□□□ 0.18
CLN3-260ENST00000637578 GMDSO60547 372 aa16.15■□□□□ 0.18
CLN3-260ENST00000637578 SLC2A1P11166 492 aa16.15■□□□□ 0.18
CLN3-260ENST00000637578 MOGAT3Q86VF5 341 aa16.15■□□□□ 0.18
CLN3-260ENST00000637578 PHC2Q8IXK0 858 aa16.15■□□□□ 0.18
CLN3-260ENST00000637578 MUC20Q8N307 709 aaPredicted RBP16.15■□□□□ 0.18
CLN3-260ENST00000637578 LGALS12Q96DT0 336 aa16.15■□□□□ 0.18
CLN3-260ENST00000637578 MNTQ99583 582 aa16.15■□□□□ 0.18
CLN3-260ENST00000637578 TBX5Q99593 518 aa16.15■□□□□ 0.18
CLN3-260ENST00000637578 ANKRD60Q9BZ19 345 aa16.15■□□□□ 0.18
CLN3-260ENST00000637578 TMEM165Q9HC07 324 aa16.15■□□□□ 0.18
CLN3-260ENST00000637578 PCDHB10Q9UN67 800 aa16.15■□□□□ 0.18
CLN3-260ENST00000637578 NOP16Q9Y3C1 178 aaKnown RBP16.15■□□□□ 0.18
CLN3-260ENST00000637578 FOXH1O75593 365 aa16.14■□□□□ 0.17
CLN3-260ENST00000637578 APOC1P02654 83 aa16.14■□□□□ 0.17
CLN3-260ENST00000637578 CA6P23280 308 aa16.14■□□□□ 0.17
CLN3-260ENST00000637578 CX3CR1P49238 355 aa16.14■□□□□ 0.17
CLN3-260ENST00000637578 CXCR4P61073 352 aa16.14■□□□□ 0.17
CLN3-260ENST00000637578 KRTAP24-1Q3LI83 254 aa16.14■□□□□ 0.17
CLN3-260ENST00000637578 LAIR2Q6ISS4 152 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms