RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 STEAP2Q8NFT2 490 aa15.92■□□□□ 0.14
CLN3-254ENST00000637050 TRMT10AQ8TBZ6 339 aaKnown RBP15.92■□□□□ 0.14
CLN3-254ENST00000637050 MRI1Q9BV20 369 aa15.92■□□□□ 0.14
CLN3-254ENST00000637050 REPIN1Q9BWE0 567 aaKnown RBP15.92■□□□□ 0.14
CLN3-254ENST00000637050 C1QTNF6Q9BXI9 259 aa15.92■□□□□ 0.14
CLN3-254ENST00000637050 MOV10Q9HCE1 1003 aaKnown RBP15.92■□□□□ 0.14
CLN3-254ENST00000637050 A0A0B4J203 849 aa15.92■□□□□ 0.14
CLN3-254ENST00000637050 SLC17A2O00624 439 aa15.92■□□□□ 0.14
CLN3-254ENST00000637050 ALX3O95076 343 aa15.92■□□□□ 0.14
CLN3-254ENST00000637050 SNRPBP14678 240 aaKnown RBP15.92■□□□□ 0.14
CLN3-254ENST00000637050 ZNF45Q02386 682 aa15.92■□□□□ 0.14
CLN3-254ENST00000637050 RIPPLY1Q0D2K3 151 aa15.92■□□□□ 0.14
CLN3-254ENST00000637050 MALLQ13021 153 aa15.92■□□□□ 0.14
CLN3-254ENST00000637050 GK2Q14410 553 aaPredicted RBP15.92■□□□□ 0.14
CLN3-254ENST00000637050 FAM166AQ6J272 317 aa15.92■□□□□ 0.14
CLN3-254ENST00000637050 CHST5Q9GZS9 411 aa15.92■□□□□ 0.14
CLN3-254ENST00000637050 LIN7BQ9HAP6 207 aa15.92■□□□□ 0.14
CLN3-254ENST00000637050 CDH20Q9HBT6 801 aa15.92■□□□□ 0.14
CLN3-254ENST00000637050 STEAP1Q9UHE8 339 aa15.92■□□□□ 0.14
CLN3-254ENST00000637050 SPATA2Q9UM82 520 aa15.92■□□□□ 0.14
CLN3-254ENST00000637050 CCL21O00585 134 aa15.91■□□□□ 0.14
CLN3-254ENST00000637050 ERCC1P07992 297 aaPredicted RBP15.91■□□□□ 0.14
CLN3-254ENST00000637050 CALCBP10092 127 aa15.91■□□□□ 0.14
CLN3-254ENST00000637050 SPANXN2Q5MJ10 180 aa15.91■□□□□ 0.14
CLN3-254ENST00000637050 RFPL4BQ6ZWI9 263 aa15.91■□□□□ 0.14
CLN3-254ENST00000637050 OR5H6Q8NGV6 325 aa15.91■□□□□ 0.14
CLN3-254ENST00000637050 FOXRED1Q96CU9 486 aaPredicted RBP15.91■□□□□ 0.14
CLN3-254ENST00000637050 CNTNAP3BQ96NU0 1288 aa15.91■□□□□ 0.14
CLN3-254ENST00000637050 CNTNAP3Q9BZ76 1288 aa15.91■□□□□ 0.14
CLN3-254ENST00000637050 ACTR6Q9GZN1 396 aa15.91■□□□□ 0.14
CLN3-254ENST00000637050 OPA3Q9H6K4 179 aa15.91■□□□□ 0.14
CLN3-254ENST00000637050 PLGRKTQ9HBL7 147 aa15.91■□□□□ 0.14
CLN3-254ENST00000637050 EIF3KQ9UBQ5 218 aaKnown RBP15.91■□□□□ 0.14
CLN3-254ENST00000637050 ATRXP46100 2492 aa15.91■□□□□ 0.14
CLN3-254ENST00000637050 IGKV1-9A0A0C4DH69 117 aa15.9■□□□□ 0.14
CLN3-254ENST00000637050 ALDOBP05062 364 aa15.9■□□□□ 0.14
CLN3-254ENST00000637050 CECR9P0C854 216 aa15.9■□□□□ 0.14
CLN3-254ENST00000637050 ZNF35P13682 527 aa15.9■□□□□ 0.14
CLN3-254ENST00000637050 CLDN12P56749 244 aa15.9■□□□□ 0.14
CLN3-254ENST00000637050 SCAND1P57086 179 aa15.9■□□□□ 0.14
CLN3-254ENST00000637050 C3orf36Q3SXR2 165 aa15.9■□□□□ 0.14
CLN3-254ENST00000637050 C1orf100Q5SVJ3 147 aa15.9■□□□□ 0.14
CLN3-254ENST00000637050 ZBTB37Q5TC79 503 aa15.9■□□□□ 0.14
CLN3-254ENST00000637050 CDH26Q8IXH8 852 aa15.9■□□□□ 0.14
CLN3-254ENST00000637050 SAMD12Q8N8I0 201 aa15.9■□□□□ 0.14
CLN3-254ENST00000637050 OR52N4Q8NGI2 321 aa15.9■□□□□ 0.14
CLN3-254ENST00000637050 OR5L1Q8NGL2 311 aa15.9■□□□□ 0.14
CLN3-254ENST00000637050 ZNF671Q8TAW3 534 aa15.9■□□□□ 0.14
CLN3-254ENST00000637050 LGALS14Q8TCE9 139 aa15.9■□□□□ 0.14
CLN3-254ENST00000637050 USB1Q9BQ65 265 aaKnown RBP15.9■□□□□ 0.14
CLN3-254ENST00000637050 POFUT1Q9H488 388 aa15.9■□□□□ 0.14
CLN3-254ENST00000637050 ADAM30Q9UKF2 790 aa15.9■□□□□ 0.14
CLN3-254ENST00000637050 RHBDD3Q9Y3P4 386 aa15.9■□□□□ 0.14
CLN3-254ENST00000637050 IGHV1-18A0A0C4DH31 117 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 J3QRK9 145 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 SMPD2O60906 423 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 CCKARP32238 428 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 RANBP1P43487 201 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 EVX1P49640 407 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 PRSS12P56730 875 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 TAB1Q15750 504 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 UBE2V2Q15819 145 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 ST3GAL2Q16842 350 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 TMEM42Q69YG0 159 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 MRPL21Q7Z2W9 205 aaKnown RBP15.89■□□□□ 0.13
CLN3-254ENST00000637050 LRRC28Q86X40 367 aaPredicted RBP15.89■□□□□ 0.13
CLN3-254ENST00000637050 SSC4DQ8WTU2 575 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 BORCS5Q969J3 196 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 SLC25A28Q96A46 364 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 MUCL1Q96DR8 90 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 DIRAS2Q96HU8 199 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 CMTM3Q96MX0 182 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 PTTG3PQ9NZH4 202 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 CGGBP1Q9UFW8 167 aaPredicted RBP15.89■□□□□ 0.13
CLN3-254ENST00000637050 OR5V1Q9UGF6 321 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 V9GYH0 126 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 ACACBO00763 2458 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 SPTA1P02549 2419 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 C16orf97H3BN30 126 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 ELK1P19419 428 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 PPP5CP53041 499 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 DCTN2Q13561 401 aaKnown RBP15.89■□□□□ 0.13
CLN3-254ENST00000637050 HLXQ14774 488 aaPredicted RBP15.89■□□□□ 0.13
CLN3-254ENST00000637050 PPA1Q15181 289 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 RAB11BQ15907 218 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 JAGN1Q8N5M9 183 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 OR6M1Q8NGM8 313 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 UQCC2Q9BRT2 126 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 OR10A4Q9H209 315 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 METTL17Q9H7H0 456 aaPredicted RBP15.89■□□□□ 0.13
CLN3-254ENST00000637050 CYSLTR2Q9NS75 346 aa15.89■□□□□ 0.13
CLN3-254ENST00000637050 NBEAQ8NFP9 2946 aa15.88■□□□□ 0.13
CLN3-254ENST00000637050 APOA1P02647 267 aa15.88■□□□□ 0.13
CLN3-254ENST00000637050 EIF4EP06730 217 aaKnown RBP15.88■□□□□ 0.13
CLN3-254ENST00000637050 PRF1P14222 555 aa15.88■□□□□ 0.13
CLN3-254ENST00000637050 HTR2CP28335 458 aa15.88■□□□□ 0.13
CLN3-254ENST00000637050 CD40LGP29965 261 aa15.88■□□□□ 0.13
CLN3-254ENST00000637050 UCP2P55851 309 aa15.88■□□□□ 0.13
CLN3-254ENST00000637050 CNIH2Q6PI25 160 aa15.88■□□□□ 0.13
CLN3-254ENST00000637050 KRT74Q7RTS7 529 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms