RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 TNK1Q13470 666 aa14.62□□□□□ -0.07
CLN3-252ENST00000636907 OXA1LQ15070 435 aa14.62□□□□□ -0.07
CLN3-252ENST00000636907 EIF2S3LQ2VIR3 472 aaKnown RBP14.62□□□□□ -0.07
CLN3-252ENST00000636907 Q6ZNX1 250 aa14.62□□□□□ -0.07
CLN3-252ENST00000636907 RNF144BQ7Z419 303 aa14.62□□□□□ -0.07
CLN3-252ENST00000636907 CCDC36Q8IYA8 594 aa14.62□□□□□ -0.07
CLN3-252ENST00000636907 IZUMO1Q8IYV9 350 aa14.62□□□□□ -0.07
CLN3-252ENST00000636907 POC5Q8NA72 575 aa14.62□□□□□ -0.07
CLN3-252ENST00000636907 RAB40AQ8WXH6 277 aa14.62□□□□□ -0.07
CLN3-252ENST00000636907 C10orf35Q96D05 121 aa14.62□□□□□ -0.07
CLN3-252ENST00000636907 HAVCR1Q96D42 359 aa14.62□□□□□ -0.07
CLN3-252ENST00000636907 FAM122AQ96E09 287 aa14.62□□□□□ -0.07
CLN3-252ENST00000636907 SORCS2Q96PQ0 1159 aa14.62□□□□□ -0.07
CLN3-252ENST00000636907 CHST5Q9GZS9 411 aa14.62□□□□□ -0.07
CLN3-252ENST00000636907 hCG_38984A0A1B0GV85 526 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 DHRS7CA6NNS2 312 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 PRRG2O14669 202 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 GLI4P10075 376 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 ARSBP15848 533 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 CEACAM8P31997 349 aaPredicted RBP14.61□□□□□ -0.07
CLN3-252ENST00000636907 NR4A2P43354 598 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 FAM3AP98173 230 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 TAB1Q15750 504 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 UBE2V2Q15819 145 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 DMRTC1Q5HYR2 192 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 UTS2BQ765I0 119 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 CXorf67Q86X51 503 aaPredicted RBP14.61□□□□□ -0.07
CLN3-252ENST00000636907 DOLPP1Q86YN1 238 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 C1orf162Q8NEQ5 155 aaPredicted RBP14.61□□□□□ -0.07
CLN3-252ENST00000636907 PP6455Q8WZ26 134 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 AKAP1Q92667 903 aaKnown RBP eCLIP14.61□□□□□ -0.07
CLN3-252ENST00000636907 SPSB4Q96A44 273 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 S100A16Q96FQ6 103 aaKnown RBP14.61□□□□□ -0.07
CLN3-252ENST00000636907 ZFP3Q96NJ6 502 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 SPACA5Q96QH8 159 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 UQCC2Q9BRT2 126 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 TP63Q9H3D4 680 aaPredicted RBP14.61□□□□□ -0.07
CLN3-252ENST00000636907 TBC1D24Q9ULP9 559 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 MRPS7Q9Y2R9 242 aaKnown RBP14.61□□□□□ -0.07
CLN3-252ENST00000636907 SERPINA5P05154 406 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 HCKP08631 526 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 ZNF93P35789 620 aaPredicted RBP14.61□□□□□ -0.07
CLN3-252ENST00000636907 MAP2K3P46734 347 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 GSK3AP49840 483 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 RIPPLY1Q0D2K3 151 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 TRIM16LQ309B1 348 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 BAIAP2L2Q6UXY1 529 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 PAQR4Q8N4S7 273 aaPredicted RBP14.61□□□□□ -0.07
CLN3-252ENST00000636907 SLC30A7Q8NEW0 376 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 SSC4DQ8WTU2 575 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 BOD1Q96IK1 185 aa14.61□□□□□ -0.07
CLN3-252ENST00000636907 ALDOBP05062 364 aa14.6□□□□□ -0.07
CLN3-252ENST00000636907 CELA3BP08861 270 aa14.6□□□□□ -0.07
CLN3-252ENST00000636907 HOXB1P14653 301 aaPredicted RBP14.6□□□□□ -0.07
CLN3-252ENST00000636907 ZNF14P17017 642 aaPredicted RBP14.6□□□□□ -0.07
CLN3-252ENST00000636907 CDK2P24941 298 aa14.6□□□□□ -0.07
CLN3-252ENST00000636907 HOXD11P31277 338 aaPredicted RBP14.6□□□□□ -0.07
CLN3-252ENST00000636907 DEFA1P59665 94 aa14.6□□□□□ -0.07
CLN3-252ENST00000636907 DEFA3P59666 94 aa14.6□□□□□ -0.07
CLN3-252ENST00000636907 SCN1BQ07699 218 aa14.6□□□□□ -0.07
CLN3-252ENST00000636907 TRIQKQ629K1 86 aa14.6□□□□□ -0.07
CLN3-252ENST00000636907 MYPOPQ86VE0 399 aaPredicted RBP14.6□□□□□ -0.07
CLN3-252ENST00000636907 WDR31Q8NA23 367 aa14.6□□□□□ -0.07
CLN3-252ENST00000636907 APOBEC3DQ96AK3 386 aaPredicted RBP14.6□□□□□ -0.07
CLN3-252ENST00000636907 ZNF835Q9Y2P0 537 aa14.6□□□□□ -0.07
CLN3-252ENST00000636907 INTS1Q8N201 2190 aaKnown RBP14.6□□□□□ -0.07
CLN3-252ENST00000636907 LINC00854A0A1B0GVQ3 168 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 LDLRAD4O15165 306 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 MAGEB3O15480 346 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 ALX3O95076 343 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 NGFP01138 241 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 HLA-DQB1P01920 261 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 OCMP0CE72 109 aaPredicted RBP14.59□□□□□ -0.07
CLN3-252ENST00000636907 PRF1P14222 555 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 WNT5AP41221 380 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 PITPNAQ00169 270 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 P2RY6Q15077 328 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 OR8B8Q15620 311 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 BEND4Q6ZU67 534 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 BIVMQ86UB2 503 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 CDH26Q8IXH8 852 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 MINDY2Q8NBR6 621 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 NPRL2Q8WTW4 380 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 SFXN3Q9BWM7 321 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 GPR173Q9NS66 373 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 MYEF2Q9P2K5 600 aaKnown RBP14.59□□□□□ -0.07
CLN3-252ENST00000636907 TINAGQ9UJW2 476 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 CACNA1AO00555 2505 aa14.59□□□□□ -0.07
CLN3-252ENST00000636907 hCG_2014768A0A024R1R8 64 aa14.58□□□□□ -0.07
CLN3-252ENST00000636907 CTAG2O75638 210 aa14.58□□□□□ -0.07
CLN3-252ENST00000636907 HOXC12P31275 282 aa14.58□□□□□ -0.07
CLN3-252ENST00000636907 PLA2G5P39877 138 aa14.58□□□□□ -0.07
CLN3-252ENST00000636907 IDH3GP51553 393 aaPredicted RBP14.58□□□□□ -0.07
CLN3-252ENST00000636907 GK2Q14410 553 aaPredicted RBP14.58□□□□□ -0.07
CLN3-252ENST00000636907 TBC1D28Q2M2D7 210 aa14.58□□□□□ -0.07
CLN3-252ENST00000636907 TMEM69Q5SWH9 247 aa14.58□□□□□ -0.07
CLN3-252ENST00000636907 OR10K2Q6IF99 312 aa14.58□□□□□ -0.07
CLN3-252ENST00000636907 CRIP3Q6Q6R5 217 aa14.58□□□□□ -0.07
CLN3-252ENST00000636907 ZNF474Q6S9Z5 364 aaPredicted RBP14.58□□□□□ -0.07
CLN3-252ENST00000636907 ZNF101Q8IZC7 436 aa14.58□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms