RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 SSNA1O43805 119 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 BPNT1O95861 308 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 IGLV3-1P01715 115 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 ITGB2P05107 769 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 HCKP08631 526 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 FTH1P19P0C7X4 201 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 ANXA7P20073 488 aaKnown RBP13.71□□□□□ -0.21
CLN3-251ENST00000636853 OTX1P32242 354 aaPredicted RBP13.71□□□□□ -0.21
CLN3-251ENST00000636853 FAUP35544 74 aaKnown RBP13.71□□□□□ -0.21
CLN3-251ENST00000636853 BAMBIQ13145 260 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 CEACAM16Q2WEN9 425 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 SNAI3Q3KNW1 292 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 PDSS1Q5T2R2 415 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 CPT1CQ8TCG5 803 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 RADILQ96JH8 1075 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 DNAJC13O75165 2243 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 IGKV1-9A0A0C4DH69 117 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 METTL21EPA6NDL7 271 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 ARGFXA6NJG6 315 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 FABP7O15540 132 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 SGCEO43556 437 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 NDUFB6O95139 128 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 LPLP06858 475 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 AKAIN1P0CW23 69 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 NAT1P18440 290 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 OR3A4PP47883 348 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 CLDN18P56856 261 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 SFRP5Q5T4F7 317 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 ZNF774Q6NX45 483 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 Q6ZTK2 550 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 ZNF101Q8IZC7 436 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 GALNT16Q8N428 558 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 ZNF680Q8NEM1 530 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 OR8H1Q8NGG4 311 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 LRRC20Q8TCA0 184 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 SPTSSAQ969W0 71 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 SEC22CQ9BRL7 303 aa13.71□□□□□ -0.21
CLN3-251ENST00000636853 A0A0A6YYH2 397 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 A6NJ64 397 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 LINC01387J3KSC0 135 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 RAB27BO00194 218 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 SP1P08047 785 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 GLIPR1L1Q6UWM5 242 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 CDH24Q86UP0 819 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 CHST4Q8NCG5 386 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 OR51S1Q8NGJ8 323 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 AKR7LQ8NHP1 331 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 NPRL2Q8WTW4 380 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 FOXB1Q99853 325 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 FAM117AQ9C073 453 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 GPR35Q9HC97 309 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 MRPS28Q9Y2Q9 187 aaKnown RBP13.7□□□□□ -0.22
CLN3-251ENST00000636853 A0A0U1RQV5 110 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 TUBAL3A6NHL2 446 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 PYCARD-AS1I3L0S3 204 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 CDK2AP1O14519 115 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 SYNGR3O43761 229 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 CST2P09228 141 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 FAHP16930 419 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 ZNF32P17041 273 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 MEOX1P50221 254 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 CAPZA1P52907 286 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 CLLU1Q5K131 121 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 STEAP1BQ6NZ63 245 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 RTN4RL2Q86UN3 420 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 GABRG1Q8N1C3 465 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 FGFBP3Q8TAT2 258 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 ZNF431Q8TF32 576 aaPredicted RBP13.7□□□□□ -0.22
CLN3-251ENST00000636853 GINS4Q9BRT9 223 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 NOSIPQ9Y314 301 aaKnown RBP13.7□□□□□ -0.22
CLN3-251ENST00000636853 MYO7BQ6PIF6 2116 aa13.7□□□□□ -0.22
CLN3-251ENST00000636853 SULT1C2O00338 296 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 DHRS3O75911 302 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 SULT1A3P0DMM9 295 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 SULT1A4P0DMN0 295 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 ACTBP60709 375 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 ACTG1P63261 375 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 HGFACQ04756 655 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 SRSF6Q13247 344 aaKnown RBP13.69□□□□□ -0.22
CLN3-251ENST00000636853 RAB35Q15286 201 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 C3AR1Q16581 482 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 FGD2Q7Z6J4 655 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 VASH2Q86V25 355 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 MDS2Q8NDY4 140 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 GPER1Q99527 375 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 KLK13Q9UKR3 277 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 FREM1Q5H8C1 2179 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 A0A1B0GUH1 482 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 TMEM14DPA8MWL7 114 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 NME2P1O60361 137 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 TGM6O95932 706 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 ZNF708P17019 499 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 NME2P22392 152 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 CRYGSP22914 178 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 ZP1P60852 638 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 RBMS2Q15434 407 aaKnown RBP13.69□□□□□ -0.22
CLN3-251ENST00000636853 ZNF260Q3ZCT1 412 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 TSPO2Q5TGU0 170 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 PIAS4Q8N2W9 510 aaPredicted RBP13.69□□□□□ -0.22
CLN3-251ENST00000636853 TMEM104Q8NE00 496 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms