RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 R4GMQ9 66 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 MALRD1Q5VYJ5 2156 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 IRGMA1A4Y4 181 aa15.39■□□□□ 0.05
CLN3-243ENST00000635973 CD300LBA8K4G0 201 aa15.39■□□□□ 0.05
CLN3-243ENST00000635973 TGFAP01135 160 aa15.39■□□□□ 0.05
CLN3-243ENST00000635973 SRD5A1P18405 259 aa15.39■□□□□ 0.05
CLN3-243ENST00000635973 HSPA13P48723 471 aa15.39■□□□□ 0.05
CLN3-243ENST00000635973 CHN2P52757 468 aa15.39■□□□□ 0.05
CLN3-243ENST00000635973 ZNF85Q03923 595 aa15.39■□□□□ 0.05
CLN3-243ENST00000635973 MFGE8Q08431 387 aaPredicted RBP15.39■□□□□ 0.05
CLN3-243ENST00000635973 TP53I3Q53FA7 332 aa15.39■□□□□ 0.05
CLN3-243ENST00000635973 FAM209AQ5JX71 171 aa15.39■□□□□ 0.05
CLN3-243ENST00000635973 THAP5Q7Z6K1 395 aa15.39■□□□□ 0.05
CLN3-243ENST00000635973 OR13G1Q8NGZ3 307 aa15.39■□□□□ 0.05
CLN3-243ENST00000635973 UBASH3BQ8TF42 649 aa15.39■□□□□ 0.05
CLN3-243ENST00000635973 SGK3Q96BR1 496 aa15.39■□□□□ 0.05
CLN3-243ENST00000635973 MSI2Q96DH6 328 aaKnown RBP15.39■□□□□ 0.05
CLN3-243ENST00000635973 ELMOD3Q96FG2 381 aa15.39■□□□□ 0.05
CLN3-243ENST00000635973 PBOV1Q9GZY1 135 aa15.39■□□□□ 0.05
CLN3-243ENST00000635973 MXRA5Q9NR99 2828 aa15.39■□□□□ 0.05
CLN3-243ENST00000635973 ACOD1A6NK06 481 aa15.38■□□□□ 0.05
CLN3-243ENST00000635973 PHF1O43189 567 aaPredicted RBP15.38■□□□□ 0.05
CLN3-243ENST00000635973 SULT1C4O75897 302 aa15.38■□□□□ 0.05
CLN3-243ENST00000635973 NCR1O76036 304 aa15.38■□□□□ 0.05
CLN3-243ENST00000635973 HPXP02790 462 aa15.38■□□□□ 0.05
CLN3-243ENST00000635973 VHLP40337 213 aa15.38■□□□□ 0.05
CLN3-243ENST00000635973 ACTA2P62736 377 aa15.38■□□□□ 0.05
CLN3-243ENST00000635973 ACTG2P63267 376 aa15.38■□□□□ 0.05
CLN3-243ENST00000635973 TNFAIP6P98066 277 aaPredicted RBP15.38■□□□□ 0.05
CLN3-243ENST00000635973 LIPNQ5VXI9 398 aa15.38■□□□□ 0.05
CLN3-243ENST00000635973 ZNF786Q8N393 782 aa15.38■□□□□ 0.05
CLN3-243ENST00000635973 OR10AD1Q8NGE0 317 aa15.38■□□□□ 0.05
CLN3-243ENST00000635973 OR56B2PQ8NGI1 322 aa15.38■□□□□ 0.05
CLN3-243ENST00000635973 OR52I1Q8NGK6 324 aa15.38■□□□□ 0.05
CLN3-243ENST00000635973 SPSB4Q96A44 273 aa15.38■□□□□ 0.05
CLN3-243ENST00000635973 INPP5EQ9NRR6 644 aa15.38■□□□□ 0.05
CLN3-243ENST00000635973 TMEM100Q9NV29 134 aa15.38■□□□□ 0.05
CLN3-243ENST00000635973 NKIRAS2Q9NYR9 191 aa15.38■□□□□ 0.05
CLN3-243ENST00000635973 ZNF319Q9P2F9 582 aa15.38■□□□□ 0.05
CLN3-243ENST00000635973 ZNF391Q9UJN7 358 aa15.38■□□□□ 0.05
CLN3-243ENST00000635973 SNX5Q9Y5X3 404 aa15.38■□□□□ 0.05
CLN3-243ENST00000635973 J3QRE1 110 aa15.37■□□□□ 0.05
CLN3-243ENST00000635973 LILRA1O75019 489 aa15.37■□□□□ 0.05
CLN3-243ENST00000635973 TACSTD2P09758 323 aa15.37■□□□□ 0.05
CLN3-243ENST00000635973 GIFP27352 417 aa15.37■□□□□ 0.05
CLN3-243ENST00000635973 MMP16P51512 607 aa15.37■□□□□ 0.05
CLN3-243ENST00000635973 CDK5R2Q13319 367 aa15.37■□□□□ 0.05
CLN3-243ENST00000635973 FAM120AOSQ5T036 256 aa15.37■□□□□ 0.05
CLN3-243ENST00000635973 Q6ZR03 302 aa15.37■□□□□ 0.05
CLN3-243ENST00000635973 RDH5Q92781 318 aa15.37■□□□□ 0.05
CLN3-243ENST00000635973 SLC30A2Q9BRI3 323 aa15.37■□□□□ 0.05
CLN3-243ENST00000635973 ALG8Q9BVK2 526 aa15.37■□□□□ 0.05
CLN3-243ENST00000635973 ACOXLQ9NUZ1 547 aa15.37■□□□□ 0.05
CLN3-243ENST00000635973 NUFIP1Q9UHK0 495 aaKnown RBP15.37■□□□□ 0.05
CLN3-243ENST00000635973 MYRFQ9Y2G1 1151 aa15.37■□□□□ 0.05
CLN3-243ENST00000635973 NOP16Q9Y3C1 178 aaKnown RBP15.37■□□□□ 0.05
CLN3-243ENST00000635973 hCG_38984A0A1B0GV85 526 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 LRP5LA4QPB2 252 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 ANKRD30BLA7E2S9 258 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 LYNX1G3V0Z9 82 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 J3QLW9 94 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 CDC14BO60729 498 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 FAM20BO75063 409 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 LYNX1P0DP58 116 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 ZNF19P17023 458 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 DDOSTP39656 456 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 GSK3AP49840 483 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 FAM3AP98173 230 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 OR8G1Q15617 311 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 CDONQ4KMG0 1287 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 IL17RELQ6ZVW7 336 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 LHFPL3Q86UP9 236 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 SIGLEC11Q96RL6 698 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 ADAT1Q9BUB4 502 aaKnown RBP15.36■□□□□ 0.05
CLN3-243ENST00000635973 SLC22A4Q9H015 551 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 MRPS18AQ9NVS2 196 aaKnown RBP15.36■□□□□ 0.05
CLN3-243ENST00000635973 OR52A1Q9UKL2 312 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 CUBNO60494 3623 aa15.36■□□□□ 0.05
CLN3-243ENST00000635973 A0A0U1RQV5 110 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 PNPP00491 289 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 IGHA1P01876 353 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 HLA-DPB1P04440 258 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 CD55P08174 381 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 ADH4P08319 380 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 MYL12AP19105 171 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 TNFRSF1AP19438 455 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 CA6P23280 308 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 PSMB10P40306 273 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 OR12D2P58182 307 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 GALEQ14376 348 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 SNCBQ16143 134 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 ZNF684Q5T5D7 378 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 KCTD20Q7Z5Y7 419 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 PHC2Q8IXK0 858 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 FTMTQ8N4E7 242 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 CSNK2A3Q8NEV1 391 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 BPIFB6Q8NFQ5 453 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 OR51E1Q8TCB6 317 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 HPS1Q92902 700 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 FAM71F1Q96KD3 344 aaPredicted RBP15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms