RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 LYNX1P0DP58 116 aa15.36■□□□□ 0.05
CLN3-239ENST00000628023 ZNF19P17023 458 aa15.36■□□□□ 0.05
CLN3-239ENST00000628023 DDOSTP39656 456 aa15.36■□□□□ 0.05
CLN3-239ENST00000628023 GSK3AP49840 483 aa15.36■□□□□ 0.05
CLN3-239ENST00000628023 FAM3AP98173 230 aa15.36■□□□□ 0.05
CLN3-239ENST00000628023 OR8G1Q15617 311 aa15.36■□□□□ 0.05
CLN3-239ENST00000628023 CDONQ4KMG0 1287 aa15.36■□□□□ 0.05
CLN3-239ENST00000628023 LHFPL3Q86UP9 236 aa15.36■□□□□ 0.05
CLN3-239ENST00000628023 MAPK1IP1LQ8NDC0 245 aa15.36■□□□□ 0.05
CLN3-239ENST00000628023 SIGLEC11Q96RL6 698 aa15.36■□□□□ 0.05
CLN3-239ENST00000628023 ADAT1Q9BUB4 502 aaKnown RBP15.36■□□□□ 0.05
CLN3-239ENST00000628023 SLC22A4Q9H015 551 aa15.36■□□□□ 0.05
CLN3-239ENST00000628023 MRPS18AQ9NVS2 196 aaKnown RBP15.36■□□□□ 0.05
CLN3-239ENST00000628023 OR52A1Q9UKL2 312 aa15.36■□□□□ 0.05
CLN3-239ENST00000628023 ABCA1O95477 2261 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 A0A0U1RQV5 110 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 NDUFS8O00217 210 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 PNPP00491 289 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 IGHA1P01876 353 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 HLA-DPB1P04440 258 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 CD55P08174 381 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 ADH4P08319 380 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 MYL12AP19105 171 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 TNFRSF1AP19438 455 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 CA6P23280 308 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 PSMB10P40306 273 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 OR12D2P58182 307 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 GALEQ14376 348 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 SNCBQ16143 134 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 ZNF684Q5T5D7 378 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 KCTD20Q7Z5Y7 419 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 ZNF786Q8N393 782 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 FTMTQ8N4E7 242 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 CSNK2A3Q8NEV1 391 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 BPIFB6Q8NFQ5 453 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 OR51E1Q8TCB6 317 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 C10orf105Q8TEF2 133 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 FAM71F1Q96KD3 344 aaPredicted RBP15.35■□□□□ 0.05
CLN3-239ENST00000628023 C4orf36Q96KX1 117 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 OR2V2Q96R30 315 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 GPR84Q9NQS5 396 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 ERVK13-1Q9NX77 482 aa15.35■□□□□ 0.05
CLN3-239ENST00000628023 MRPL15Q9P015 296 aaKnown RBP15.35■□□□□ 0.05
CLN3-239ENST00000628023 SONP18583 2426 aaKnown RBP15.35■□□□□ 0.05
CLN3-239ENST00000628023 IGHV1-69-2A0A0G2JMI3 117 aa15.34■□□□□ 0.05
CLN3-239ENST00000628023 EFCAB10A6NFE3 127 aa15.34■□□□□ 0.05
CLN3-239ENST00000628023 SRSF10O75494 262 aaKnown RBP15.34■□□□□ 0.05
CLN3-239ENST00000628023 SLC25A16P16260 332 aa15.34■□□□□ 0.05
CLN3-239ENST00000628023 ACHEP22303 614 aa15.34■□□□□ 0.05
CLN3-239ENST00000628023 DCKP27707 260 aa15.34■□□□□ 0.05
CLN3-239ENST00000628023 GNALP38405 381 aa15.34■□□□□ 0.05
CLN3-239ENST00000628023 SRP9P49458 86 aaKnown RBP15.34■□□□□ 0.05
CLN3-239ENST00000628023 MRPS11P82912 194 aaKnown RBP15.34■□□□□ 0.05
CLN3-239ENST00000628023 MED21Q13503 144 aa15.34■□□□□ 0.05
CLN3-239ENST00000628023 HFEQ30201 348 aa15.34■□□□□ 0.05
CLN3-239ENST00000628023 DNM1P46Q6ZS02 220 aa15.34■□□□□ 0.05
CLN3-239ENST00000628023 ELMOD2Q8IZ81 293 aa15.34■□□□□ 0.05
CLN3-239ENST00000628023 ITLN1Q8WWA0 313 aa15.34■□□□□ 0.05
CLN3-239ENST00000628023 RORBQ92753 470 aa15.34■□□□□ 0.05
CLN3-239ENST00000628023 LYZL4Q96KX0 146 aa15.34■□□□□ 0.05
CLN3-239ENST00000628023 MDFIQ99750 246 aa15.34■□□□□ 0.05
CLN3-239ENST00000628023 PAPOLGQ9BWT3 736 aaKnown RBP15.34■□□□□ 0.05
CLN3-239ENST00000628023 CHODLQ9H9P2 273 aa15.34■□□□□ 0.05
CLN3-239ENST00000628023 FGF20Q9NP95 211 aaPredicted RBP15.34■□□□□ 0.05
CLN3-239ENST00000628023 G6PC2Q9NQR9 355 aa15.34■□□□□ 0.05
CLN3-239ENST00000628023 CHCHD3Q9NX63 227 aaKnown RBP15.34■□□□□ 0.05
CLN3-239ENST00000628023 IL19Q9UHD0 177 aa15.34■□□□□ 0.05
CLN3-239ENST00000628023 CHD3Q12873 2000 aaKnown RBP15.34■□□□□ 0.05
CLN3-239ENST00000628023 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.33■□□□□ 0.04
CLN3-239ENST00000628023 F5H5P2 479 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 H0YL77 283 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 MLNRO43193 412 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 XPNPEP2O43895 674 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 TTRP02766 147 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 HTR1AP08908 422 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 MYF6P23409 242 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 COL8A2P25067 703 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 KRTAP1-1Q07627 177 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 OR8B8Q15620 311 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 ODF4Q2M2E3 257 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 AHSA2Q719I0 299 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 CATSPERDQ86XM0 798 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 ZNF540Q8NDQ6 660 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 OR8S1Q8NH09 359 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 FBLIM1Q8WUP2 373 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 CCL17Q92583 94 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 DVL3Q92997 716 aaPredicted RBP15.33■□□□□ 0.04
CLN3-239ENST00000628023 YIPF5Q969M3 257 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 PPP1R14AQ96A00 147 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 TMEM80Q96HE8 168 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 ANKRD60Q9BZ19 345 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 YAE1D1Q9NRH1 226 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 TREM2Q9NZC2 230 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 DIMT1Q9UNQ2 313 aaKnown RBP15.33■□□□□ 0.04
CLN3-239ENST00000628023 SLC22A13Q9Y226 551 aa15.33■□□□□ 0.04
CLN3-239ENST00000628023 A0A1B0GVI7 797 aa15.32■□□□□ 0.04
CLN3-239ENST00000628023 P2RY10O00398 339 aa15.32■□□□□ 0.04
CLN3-239ENST00000628023 PPIHO43447 177 aaKnown RBP15.32■□□□□ 0.04
CLN3-239ENST00000628023 CD5LO43866 347 aa15.32■□□□□ 0.04
CLN3-239ENST00000628023 MTRF1O75570 445 aaKnown RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms