RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 OR9K2Q8NGE7 335 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 OR56B2PQ8NGI1 322 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 KCNG3Q8TAE7 436 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 MUC7Q8TAX7 377 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 DCAKDQ8WVC6 231 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 CAPSLQ8WWF8 208 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 CDS1Q92903 461 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 KCNS1Q96KK3 526 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 CENPKQ9BS16 269 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 GCOM2Q9BZD3 368 aaPredicted RBP0.69□□□□□ -2.3
SCN1A-208ENST00000625916 PIGUQ9H490 435 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 INIPQ9NRY2 104 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 PISDQ9UG56 409 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 BLOC1S6Q9UL45 172 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 SLC22A7Q9Y694 548 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 AHNAKQ09666 5890 aaKnown RBP0.69□□□□□ -2.3
SCN1A-208ENST00000625916 TSPOAP1O95153 1857 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 COL22A1Q8NFW1 1626 aaPredicted RBP0.68□□□□□ -2.3
SCN1A-208ENST00000625916 SMCO3A2RU48 225 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 A6NDN8 102 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 AP3B1O00203 1094 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 NDUFAB1O14561 156 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 CPSF4O95639 269 aaKnown RBP0.68□□□□□ -2.3
SCN1A-208ENST00000625916 FGFR1OPO95684 399 aaKnown RBP0.68□□□□□ -2.3
SCN1A-208ENST00000625916 LSM8O95777 96 aaKnown RBP0.68□□□□□ -2.3
SCN1A-208ENST00000625916 HPRT1P00492 218 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 APLNRP35414 380 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 ACTR1AP61163 376 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 IL5RAQ01344 420 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 LIPEQ05469 1076 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 MFSD14CQ5VZR4 134 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 CENPPQ6IPU0 288 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 TTC23LQ6PF05 361 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 RGS9BPQ6ZS82 235 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 TCF24Q7RTU0 167 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 NANOGNBQ7Z5D8 188 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 CBLN2Q8IUK8 224 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 BBS7Q8IWZ6 715 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 SLC25A29Q8N8R3 303 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 BPIFCQ8NFQ6 507 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 OR7G2Q8NG99 324 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 OR4M2Q8NGB6 313 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 OR4A4PQ8NGN8 299 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 OR4C13Q8NGP0 309 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 NT5C3BQ969T7 300 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 OTUB2Q96DC9 234 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 ZNF649Q9BS31 505 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 RGS18Q9NS28 235 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 BAHCC1Q9P281 2608 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 RAB22AQ9UL26 194 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 THADAQ6YHU6 1953 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 TENM3Q9P273 2699 aa0.68□□□□□ -2.3
SCN1A-208ENST00000625916 SSH2Q76I76 1423 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 IGHV1-46P01743 117 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 IGHG2P01859 326 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 USF1P22415 310 aaPredicted RBP0.67□□□□□ -2.3
SCN1A-208ENST00000625916 OR1E1P30953 314 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 PFN2P35080 140 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 BMI1P35226 326 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 GGT2P36268 569 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 RAB10P61026 200 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 PPP1CAP62136 330 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 ANKDD1AQ495B1 522 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 HSP90AB3PQ58FF7 597 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 ZNF678Q5SXM1 525 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 LIN9Q5TKA1 542 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 C22orf42Q6IC83 251 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 CASC1Q6TDU7 716 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 CDH26Q8IXH8 852 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 OR5K2Q8NHB8 316 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 LYPD6BQ8NI32 183 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 ZNF420Q8TAQ5 688 aaPredicted RBP0.67□□□□□ -2.3
SCN1A-208ENST00000625916 ACMSDQ8TDX5 336 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 RBPMSQ93062 196 aaKnown RBP0.67□□□□□ -2.3
SCN1A-208ENST00000625916 YIPF5Q969M3 257 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 TMEM38AQ9H6F2 299 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 VSIRQ9H7M9 311 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 ZNF442Q9H7R0 627 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 MRM3Q9HC36 420 aaKnown RBP0.67□□□□□ -2.3
SCN1A-208ENST00000625916 OR2S2Q9NQN1 319 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 TMEM106BQ9NUM4 274 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 DCAF16Q9NXF7 216 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 MTCH1Q9NZJ7 389 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 SLC17A4Q9Y2C5 497 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 COMMD3-BMI1R4GMX3 469 aa0.67□□□□□ -2.3
SCN1A-208ENST00000625916 BAZ2AQ9UIF9 1905 aaKnown RBP0.66□□□□□ -2.3
SCN1A-208ENST00000625916 SPATA31E1Q6ZUB1 1445 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 GABRPO00591 440 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 CXCL11O14625 94 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 ZNF73O43830 326 aaPredicted RBP0.66□□□□□ -2.3
SCN1A-208ENST00000625916 KCNK2O95069 426 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 LCA5LO95447 670 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 IGHMP01871 453 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 CTSGP08311 255 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 PGA4P0DJD7 388 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 PGA3P0DJD8 388 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 PGA5P0DJD9 388 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 PRPS1L1P21108 318 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 CSRP1P21291 193 aaKnown RBP0.66□□□□□ -2.3
SCN1A-208ENST00000625916 PBLDP30039 288 aaPredicted RBP0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms