RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 MEPCEQ7L2J0 689 aaKnown RBP9.14□□□□□ -0.95
VPS39-214ENST00000614932 OR9K2Q8NGE7 335 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 OR2D3Q8NGH3 330 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 MFSD8Q8NHS3 518 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 EFCAB11Q9BUY7 163 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 NMES1Q9C002 83 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 THAP10Q9P2Z0 257 aaPredicted RBP9.14□□□□□ -0.95
VPS39-214ENST00000614932 IL19Q9UHD0 177 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 GTF2A1LQ9UNN4 478 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 C13orf42A0A1B0GVH6 325 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 ZC3H12DA2A288 527 aaKnown RBP9.13□□□□□ -0.95
VPS39-214ENST00000614932 CDHR4A6H8M9 788 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 MEIS3P1A6NDR6 274 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 PPP5D1E7EU14 171 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 H0Y8X5 98 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 H0YIZ8 118 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 M0QZ24 198 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 CYR61O00622 381 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 LIPCP11150 499 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 ZNF16P17020 682 aaPredicted RBP9.13□□□□□ -0.95
VPS39-214ENST00000614932 HSD11B1P28845 292 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 OR10J1P30954 320 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 RABIFP47224 123 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 CLDN2P57739 230 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 NHLH1Q02575 133 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 GUCA2AQ02747 115 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 TFF2Q03403 129 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 EBPQ15125 230 aaKnown RBP9.13□□□□□ -0.95
VPS39-214ENST00000614932 TMEM52BQ4KMG9 183 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 WDR73Q6P4I2 378 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 LINC01551Q86U37 167 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 ZNF101Q8IZC7 436 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 LINC01555Q8NAE3 123 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 CLEC1AQ8NC01 280 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 KCNE4Q8WWG9 221 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 FKBP11Q9NYL4 201 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 TAAR2Q9P1P5 351 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 RNF150Q9ULK6 438 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 SRPK3Q9UPE1 567 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 RBM7Q9Y580 266 aaKnown RBP9.13□□□□□ -0.95
VPS39-214ENST00000614932 BRWD1Q9NSI6 2320 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 ERAL1O75616 437 aaKnown RBP9.13□□□□□ -0.95
VPS39-214ENST00000614932 SERPINA2P20848 420 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 SLC2A5P22732 501 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 TEAD1P28347 426 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 HSF1Q00613 529 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 PSG6Q00889 435 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 SSBP1Q04837 148 aaKnown RBP9.13□□□□□ -0.95
VPS39-214ENST00000614932 DPTQ07507 201 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 YOD1Q5VVQ6 348 aaPredicted RBP9.13□□□□□ -0.95
VPS39-214ENST00000614932 TMEM205Q6UW68 189 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 CASTOR1Q8WTX7 329 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 SLC38A5Q8WUX1 472 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 SEH1LQ96EE3 360 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 SMIM12Q96EX1 92 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 C20orf144Q9BQM9 153 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 SLC25A18Q9H1K4 315 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 OR10A5Q9H207 317 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 ADGRL4Q9HBW9 690 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 CAPN10Q9HC96 672 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 NOX4Q9NPH5 578 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 SLC2A4RGQ9NR83 387 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 CNIH4Q9P003 139 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 OSGIN2Q9Y236 505 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 CHD3Q12873 2000 aaKnown RBP9.13□□□□□ -0.95
VPS39-214ENST00000614932 A0A1W2PQU0 124 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 M0R3H8 397 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 NME2P1O60361 137 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 NDUFB8O95169 186 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 TOMM40O96008 361 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 CST4P01036 141 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 EFNA3P52797 238 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 PRKAG1P54619 331 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 RPS11P62280 158 aaKnown RBP eCLIP9.13□□□□□ -0.95
VPS39-214ENST00000614932 MLF2Q15773 248 aaPredicted RBP9.13□□□□□ -0.95
VPS39-214ENST00000614932 TRIM61Q5EBN2 209 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 PRAMEF20Q5VT98 475 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 RTL6Q6ICC9 239 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 TMEM108Q6UXF1 575 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 UNQ9370/PRO34162Q6UXP9 181 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 S100A7AQ86SG5 101 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 STT3BQ8TCJ2 826 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 FAM216AQ8WUB2 273 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 TOMM40LQ969M1 308 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 CXorf40BQ96DE9 158 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 SMIM19Q96E16 107 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 TMEM19Q96HH6 336 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 OR8B4Q96RC9 309 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 GPR174Q9BXC1 333 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 CXorf36Q9H7Y0 433 aa9.13□□□□□ -0.95
VPS39-214ENST00000614932 A0A087WUU8 490 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 A0A1W2PS29 197 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 F6UZH7 168 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 FCMRO60667 390 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 IL2RAP01589 272 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 AMY2AP04746 511 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 C8orf89P0DMQ9 161 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 FOLR1P15328 257 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 CX3CR1P49238 355 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 MANFP55145 182 aaKnown RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms