RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 NDNFQ8TB73 568 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 TMEM203Q969S6 136 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 RNF166Q96A37 237 aaPredicted RBP9.88□□□□□ -0.83
LINC00539-204ENST00000608957 PGLYRP3Q96LB9 341 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 COQ7Q99807 217 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 SYT3Q9BQG1 590 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 CENPOQ9BU64 300 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 TPK1Q9H3S4 243 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 EXOSC4Q9NPD3 245 aaKnown RBP9.88□□□□□ -0.83
LINC00539-204ENST00000608957 PNRC2Q9NPJ4 139 aaKnown RBP9.88□□□□□ -0.83
LINC00539-204ENST00000608957 CENPMQ9NSP4 180 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 SSR3Q9UNL2 185 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 CMAHPQ9Y471 501 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 TANC2Q9HCD6 1990 aa9.88□□□□□ -0.83
LINC00539-204ENST00000608957 IGHV4-61A0A0C4DH41 118 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 TRBV2A0A0J9YWF9 115 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 TRDV1A0A1B0GX56 115 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 A0A1W2PPW3 197 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 RER1O15258 196 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 RGS9O75916 674 aaPredicted RBP9.87□□□□□ -0.83
LINC00539-204ENST00000608957 FARS2O95363 451 aaKnown RBP9.87□□□□□ -0.83
LINC00539-204ENST00000608957 HLA-DPB1P04440 258 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 CSF3P09919 207 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 IGHV4-31P0DP07 118 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 GALP22466 123 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 APEX1P27695 318 aaKnown RBP9.87□□□□□ -0.83
LINC00539-204ENST00000608957 ALDH3B1P43353 468 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 NR4A2P43354 598 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 HIST1H3AP68431 136 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 FABP5Q01469 135 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 SCRN3Q0VDG4 424 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 SPCS2Q15005 226 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 ZNF829Q3KNS6 432 aaPredicted RBP9.87□□□□□ -0.83
LINC00539-204ENST00000608957 TMEM255AQ5JRV8 349 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 HIST2H3PS2Q5TEC6 136 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 TMEM53Q6P2H8 277 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 FDX2Q6P4F2 183 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 CD200R1LQ6Q8B3 271 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 HIST2H3AQ71DI3 136 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 RHOUQ7L0Q8 258 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 ALDH16A1Q8IZ83 802 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 CPEB3Q8NE35 698 aaKnown RBP9.87□□□□□ -0.83
LINC00539-204ENST00000608957 SLC30A7Q8NEW0 376 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 GJC3Q8NFK1 279 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 OR2G2Q8NGZ5 317 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 GHSRQ92847 366 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 C4orf45Q96LM5 186 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 DCUN1D5Q9BTE7 237 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 OR51B6Q9H340 312 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 RNF121Q9H920 327 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 DDX28Q9NUL7 540 aaKnown RBP9.87□□□□□ -0.83
LINC00539-204ENST00000608957 FBXL3Q9UKT7 428 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 R4GMQ9 66 aa9.87□□□□□ -0.83
LINC00539-204ENST00000608957 TMEM212A6NML5 194 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 LOC110117498-PIK3R3F6TDL0 507 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 LYNX1G3V0Z9 82 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 GABRPO00591 440 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 CRLF1O75462 422 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 SRSF10O75494 262 aaKnown RBP9.86□□□□□ -0.83
LINC00539-204ENST00000608957 SERPINA3P01011 423 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 FAM157BP0CG42 384 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 LYNX1P0DP58 116 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 ZNF32P17041 273 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 HSD11B1P28845 292 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 DCTDP32321 178 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 TGFBR1P36897 503 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 SERPINB10P48595 397 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 EVX1P49640 407 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 PSMA6P60900 246 aaKnown RBP9.86□□□□□ -0.83
LINC00539-204ENST00000608957 PCBD1P61457 104 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 GRB2P62993 217 aaKnown RBP9.86□□□□□ -0.83
LINC00539-204ENST00000608957 MFGE8Q08431 387 aaPredicted RBP9.86□□□□□ -0.83
LINC00539-204ENST00000608957 TAF13Q15543 124 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 CARTPTQ16568 116 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 PABPC1L2AQ5JQF8 200 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 WDR38Q5JTN6 314 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 ELFN2Q5R3F8 820 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 USP43Q70EL4 1123 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 SYT9Q86SS6 491 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.86□□□□□ -0.83
LINC00539-204ENST00000608957 MS4A15Q8N5U1 240 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 ATF6BQ99941 703 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 PDCD1LG2Q9BQ51 273 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 SOX7Q9BT81 388 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 WACQ9BTA9 647 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 BPESC1Q9GZL8 116 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 COMMD4Q9H0A8 199 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 WNT5BQ9H1J7 359 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 DCSTAMPQ9H295 470 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 KCNN2Q9H2S1 579 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 RNF167Q9H6Y7 350 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 NIPAL2Q9H841 368 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 MOB1AQ9H8S9 216 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 YAE1D1Q9NRH1 226 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 TXNL4BQ9NX01 149 aaKnown RBP9.86□□□□□ -0.83
LINC00539-204ENST00000608957 FRRS1LQ9P0K9 344 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 ZNF281Q9Y2X9 895 aa9.86□□□□□ -0.83
LINC00539-204ENST00000608957 LOC100509620A0A075B734 347 aa9.85□□□□□ -0.83
LINC00539-204ENST00000608957 LOC390937A0A1W2PQ73 354 aa9.85□□□□□ -0.83
LINC00539-204ENST00000608957 OR4C45A6NMZ5 311 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms