RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 FAM206AQ9NX38 181 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 IMPAD1Q9NX62 359 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 TREM2Q9NZC2 230 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 LPAR3Q9UBY5 353 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.63□□□□□ -0.23
LSM4-206ENST00000600289 A0A0U1RQV5 110 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 ZNF670-ZNF695F2Z2N8 137 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 TMEM178BH3BS89 294 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 SRSF10O75494 262 aaKnown RBP13.62□□□□□ -0.23
LSM4-206ENST00000600289 TGFAP01135 160 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 IGLV3-1P01715 115 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 HLA-DPB1P04440 258 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 OR2T7P0C7T2 308 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 CA6P23280 308 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 GSK3AP49840 483 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 RIDAP52758 137 aaKnown RBP13.62□□□□□ -0.23
LSM4-206ENST00000600289 CXCR4P61073 352 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 BTG1P62324 171 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 MZT1Q08AG7 82 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 ZNF829Q3KNS6 432 aaPredicted RBP13.62□□□□□ -0.23
LSM4-206ENST00000600289 ZNF322Q6U7Q0 402 aaPredicted RBP13.62□□□□□ -0.23
LSM4-206ENST00000600289 FTMTQ8N4E7 242 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 RFLNBQ8N5W9 214 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 OR8B12Q8NGG6 310 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 OR51G2Q8NGK0 314 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 OR2T27Q8NH04 317 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 NARFLQ9H6Q4 476 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 C8orf4Q9NR00 106 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 DCAF16Q9NXF7 216 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 CDC42EP3Q9UKI2 254 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 N6AMT1Q9Y5N5 214 aa13.62□□□□□ -0.23
LSM4-206ENST00000600289 TMEM269A0A1B0GVZ9 245 aa13.61□□□□□ -0.23
LSM4-206ENST00000600289 LRRC30A6NM36 301 aa13.61□□□□□ -0.23
LSM4-206ENST00000600289 ANKRD30BLA7E2S9 258 aa13.61□□□□□ -0.23
LSM4-206ENST00000600289 FAM157AC9JC47 383 aa13.61□□□□□ -0.23
LSM4-206ENST00000600289 GABRB1P18505 474 aa13.61□□□□□ -0.23
LSM4-206ENST00000600289 CPT2P23786 658 aa13.61□□□□□ -0.23
LSM4-206ENST00000600289 ZIK1Q3SY52 487 aaPredicted RBP13.61□□□□□ -0.23
LSM4-206ENST00000600289 LRRC28Q86X40 367 aaPredicted RBP13.61□□□□□ -0.23
LSM4-206ENST00000600289 C1orf87Q8N0U7 546 aa13.61□□□□□ -0.23
LSM4-206ENST00000600289 MUC20Q8N307 709 aaPredicted RBP13.61□□□□□ -0.23
LSM4-206ENST00000600289 SPICQ8N5J4 248 aa13.61□□□□□ -0.23
LSM4-206ENST00000600289 ABCB9Q9NP78 766 aa13.61□□□□□ -0.23
LSM4-206ENST00000600289 BRD7Q9NPI1 651 aa13.61□□□□□ -0.23
LSM4-206ENST00000600289 NUFIP1Q9UHK0 495 aaKnown RBP13.61□□□□□ -0.23
LSM4-206ENST00000600289 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.6□□□□□ -0.23
LSM4-206ENST00000600289 SLC16A6O15403 523 aa13.6□□□□□ -0.23
LSM4-206ENST00000600289 MPZL2O60487 215 aa13.6□□□□□ -0.23
LSM4-206ENST00000600289 BAG2O95816 211 aa13.6□□□□□ -0.23
LSM4-206ENST00000600289 MSMBP08118 114 aa13.6□□□□□ -0.23
LSM4-206ENST00000600289 ANPEPP15144 967 aa13.6□□□□□ -0.23
LSM4-206ENST00000600289 ATP6V1B1P15313 513 aa13.6□□□□□ -0.23
LSM4-206ENST00000600289 PCMT1P22061 227 aa13.6□□□□□ -0.23
LSM4-206ENST00000600289 MDH2P40926 338 aaKnown RBP13.6□□□□□ -0.23
LSM4-206ENST00000600289 ZNF684Q5T5D7 378 aa13.6□□□□□ -0.23
LSM4-206ENST00000600289 MOGAT3Q86VF5 341 aa13.6□□□□□ -0.23
LSM4-206ENST00000600289 GLCCI1Q86VQ1 547 aa13.6□□□□□ -0.23
LSM4-206ENST00000600289 PACRGLQ8N7B6 248 aa13.6□□□□□ -0.23
LSM4-206ENST00000600289 OR51F2Q8NH61 342 aa13.6□□□□□ -0.23
LSM4-206ENST00000600289 ZNF420Q8TAQ5 688 aaPredicted RBP13.6□□□□□ -0.23
LSM4-206ENST00000600289 LYZL4Q96KX0 146 aa13.6□□□□□ -0.23
LSM4-206ENST00000600289 GAL3ST1Q99999 423 aa13.6□□□□□ -0.23
LSM4-206ENST00000600289 C14orf119Q9NWQ9 140 aa13.6□□□□□ -0.23
LSM4-206ENST00000600289 IKZF2Q9UKS7 526 aa13.6□□□□□ -0.23
LSM4-206ENST00000600289 GMPPBQ9Y5P6 360 aa13.6□□□□□ -0.23
LSM4-206ENST00000600289 TRAV20A0A0B4J274 112 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 SNTNA6NMZ2 147 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 F5H0A9 414 aaPredicted RBP13.59□□□□□ -0.23
LSM4-206ENST00000600289 J3QRE1 110 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 PSMD9O00233 223 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 ENTPD6O75354 484 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 SULT1C4O75897 302 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 CST4P01036 141 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 PMELP40967 661 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 MTNR1AP48039 350 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 ACTC1P68032 377 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 ACTA1P68133 377 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 ZMYND11Q15326 602 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 GFOD2Q3B7J2 385 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 CHRFAM7AQ494W8 412 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 OR11L1Q8NGX0 322 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 UBE2FQ969M7 185 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 TMEM186Q96B77 213 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 PBOV1Q9GZY1 135 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 FN3KRPQ9HA64 309 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 FAM118AQ9NWS6 357 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 SMPD3Q9NY59 655 aaPredicted RBP13.59□□□□□ -0.23
LSM4-206ENST00000600289 MRM2Q9UI43 246 aaKnown RBP13.59□□□□□ -0.23
LSM4-206ENST00000600289 MPC1Q9Y5U8 109 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 R4GMQ9 66 aa13.59□□□□□ -0.23
LSM4-206ENST00000600289 LOC100130705A0A1B0GUX0 176 aa13.58□□□□□ -0.24
LSM4-206ENST00000600289 A0A1W2PQL4 384 aaPredicted RBP13.58□□□□□ -0.24
LSM4-206ENST00000600289 ISPDA4D126 451 aa13.58□□□□□ -0.24
LSM4-206ENST00000600289 DLGAP1O14490 977 aa13.58□□□□□ -0.24
LSM4-206ENST00000600289 KRT8P05787 483 aa13.58□□□□□ -0.24
LSM4-206ENST00000600289 IRF2P14316 349 aa13.58□□□□□ -0.24
LSM4-206ENST00000600289 ACKR3P25106 362 aa13.58□□□□□ -0.24
LSM4-206ENST00000600289 ISL1P61371 349 aa13.58□□□□□ -0.24
LSM4-206ENST00000600289 ZBTB37Q5TC79 503 aa13.58□□□□□ -0.24
LSM4-206ENST00000600289 PRAMEF6Q5VXH4 476 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms