RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 SLC29A1Q99808 456 aa13.56□□□□□ -0.24
TRIM28-213ENST00000598355 GAL3ST1Q99999 423 aa13.56□□□□□ -0.24
TRIM28-213ENST00000598355 MROQ9BYG7 248 aa13.56□□□□□ -0.24
TRIM28-213ENST00000598355 G6PC2Q9NQR9 355 aa13.56□□□□□ -0.24
TRIM28-213ENST00000598355 H2AFY2Q9P0M6 372 aaPredicted RBP13.56□□□□□ -0.24
TRIM28-213ENST00000598355 NUFIP1Q9UHK0 495 aaKnown RBP13.56□□□□□ -0.24
TRIM28-213ENST00000598355 ORC6Q9Y5N6 252 aa13.56□□□□□ -0.24
TRIM28-213ENST00000598355 TRAV20A0A0B4J274 112 aa13.55□□□□□ -0.24
TRIM28-213ENST00000598355 A8MXK9 166 aa13.55□□□□□ -0.24
TRIM28-213ENST00000598355 ACKR3P25106 362 aa13.55□□□□□ -0.24
TRIM28-213ENST00000598355 MDH2P40926 338 aaKnown RBP13.55□□□□□ -0.24
TRIM28-213ENST00000598355 CXCR4P61073 352 aa13.55□□□□□ -0.24
TRIM28-213ENST00000598355 SNRPGP62308 76 aaKnown RBP13.55□□□□□ -0.24
TRIM28-213ENST00000598355 EGR3Q06889 387 aa13.55□□□□□ -0.24
TRIM28-213ENST00000598355 MPPED2Q15777 294 aa13.55□□□□□ -0.24
TRIM28-213ENST00000598355 ZSCAN26Q16670 478 aa13.55□□□□□ -0.24
TRIM28-213ENST00000598355 ZNF684Q5T5D7 378 aa13.55□□□□□ -0.24
TRIM28-213ENST00000598355 ZNF322Q6U7Q0 402 aaPredicted RBP13.55□□□□□ -0.24
TRIM28-213ENST00000598355 SPICQ8N5J4 248 aa13.55□□□□□ -0.24
TRIM28-213ENST00000598355 CSNK2A3Q8NEV1 391 aa13.55□□□□□ -0.24
TRIM28-213ENST00000598355 SHARPINQ9H0F6 387 aa13.55□□□□□ -0.24
TRIM28-213ENST00000598355 PATZ1Q9HBE1 687 aaKnown RBP13.55□□□□□ -0.24
TRIM28-213ENST00000598355 BRD7Q9NPI1 651 aa13.55□□□□□ -0.24
TRIM28-213ENST00000598355 POLR3KQ9Y2Y1 108 aaPredicted RBP13.55□□□□□ -0.24
TRIM28-213ENST00000598355 ISPDA4D126 451 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 PSMD9O00233 223 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 FAM20BO75063 409 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 CYB5R3P00387 301 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-213ENST00000598355 PNPP00491 289 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 ANPEPP15144 967 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 GABRB1P18505 474 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 PCMT1P22061 227 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 CPT2P23786 658 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 RIDAP52758 137 aaKnown RBP13.54□□□□□ -0.24
TRIM28-213ENST00000598355 MFGE8Q08431 387 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-213ENST00000598355 SNCBQ16143 134 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 ZNF829Q3KNS6 432 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-213ENST00000598355 PRAMEF6Q5VXH4 476 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 Q6ZSR3 168 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 SSX6Q7RTT6 188 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 WDR86Q86TI4 376 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 C1orf87Q8N0U7 546 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 MUC20Q8N307 709 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-213ENST00000598355 OR51G2Q8NGK0 314 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 DVL3Q92997 716 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-213ENST00000598355 RFKQ969G6 155 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 UBE2FQ969M7 185 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 TTTY10Q9BZA0 68 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 MOB1AQ9H8S9 216 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 HIF1ANQ9NWT6 349 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 IMPAD1Q9NX62 359 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 MRM2Q9UI43 246 aaKnown RBP13.54□□□□□ -0.24
TRIM28-213ENST00000598355 N6AMT1Q9Y5N5 214 aa13.54□□□□□ -0.24
TRIM28-213ENST00000598355 PPIAL4EA0A075B759 164 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 PPIAL4CA0A0B4J2A2 164 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 TMEM269A0A1B0GVZ9 245 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 ANKRD30BLA7E2S9 258 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 ZNF670-ZNF695F2Z2N8 137 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 PPIAL4DF5H284 164 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 DLGAP1O14490 977 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 PLPP2O43688 288 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 CST4P01036 141 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 OR2T7P0C7T2 308 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 PPIAL4FP0DN26 164 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 ISL1P61371 349 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 OCLNQ16625 522 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 ZNF404Q494X3 552 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 ZBTB49Q6ZSB9 765 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 OR2T27Q8NH04 317 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 ITPKCQ96DU7 683 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 RDH12Q96NR8 316 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 PBOV1Q9GZY1 135 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 TLNRD1Q9H1K6 362 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 TMEM165Q9HC07 324 aa13.53□□□□□ -0.24
TRIM28-213ENST00000598355 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.52□□□□□ -0.25
TRIM28-213ENST00000598355 IGHV3-64DA0A0J9YX35 117 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 LRRC30A6NM36 301 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 CEACAM18A8MTB9 384 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 KIAA1324LA8MWY0 1029 aaPredicted RBP13.52□□□□□ -0.25
TRIM28-213ENST00000598355 J3QRE1 110 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 TTRP02766 147 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 ATP6V1B1P15313 513 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 HNF1AP20823 631 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 THBS2P35442 1172 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 MZT1Q08AG7 82 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 GFOD2Q3B7J2 385 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 ZIK1Q3SY52 487 aaPredicted RBP13.52□□□□□ -0.25
TRIM28-213ENST00000598355 MEDAGQ5VYS4 303 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 IL17RELQ6ZVW7 336 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 FTMTQ8N4E7 242 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 KLHL36Q8N4N3 616 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 STMN2Q93045 179 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 APOL4Q9BPW4 351 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 BEX2Q9BXY8 128 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 PPP1R3EQ9H7J1 279 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 FN3KRPQ9HA64 309 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 LPAR2Q9HBW0 351 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 ABCB9Q9NP78 766 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 C14orf119Q9NWQ9 140 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 IKZF2Q9UKS7 526 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms