RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 LPLP06858 475 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 CHRM2P08172 466 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 ALDH3B1P43353 468 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 RAB25P57735 213 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 RIPPLY1Q0D2K3 151 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 C3AR1Q16581 482 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 SNAI3Q3KNW1 292 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 PABPC1L2AQ5JQF8 200 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 IGFL3Q6UXB1 125 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 BIVMQ86UB2 503 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 GPX8Q8TED1 209 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 SPSB1Q96BD6 273 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 REEP6Q96HR9 211 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 GMPPAQ96IJ6 420 aaPredicted RBP12.38□□□□□ -0.43
LIG3-205ENST00000585941 GPER1Q99527 375 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 KCNK15Q9H427 330 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 PIGLQ9Y2B2 252 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 FREM1Q5H8C1 2179 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 H2AFB2P0C5Z0 115 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 VSIG8P0DPA2 414 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 PSMB1P20618 241 aaKnown RBP12.38□□□□□ -0.43
LIG3-205ENST00000585941 AGTR1P30556 359 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 PCGF3Q3KNV8 242 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 TBRG1Q3YBR2 411 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 SFRP5Q5T4F7 317 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 TMEM53Q6P2H8 277 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 P4HA3Q7Z4N8 544 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 ZNF101Q8IZC7 436 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 SARAFQ96BY9 339 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 RTTNQ86VV8 2226 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 CEP250Q9BV73 2442 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 C7orf66A4D0T2 115 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 C5orf63A6NC05 138 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 SS18L1O75177 396 aaPredicted RBP12.37□□□□□ -0.43
LIG3-205ENST00000585941 PATE4P0C8F1 98 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 FAHP16930 419 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 PRKACBP22694 351 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 ANOS1P23352 680 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 MPGP29372 298 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 EIF2S3P41091 472 aaKnown RBP12.37□□□□□ -0.43
LIG3-205ENST00000585941 OR3A2P47893 321 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 PMP22Q01453 160 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 UNC119Q13432 240 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 KISS1Q15726 138 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 ZBTB37Q5TC79 503 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 FBXW9Q5XUX1 488 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 GLIPR1L1Q6UWM5 242 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 NUFIP2Q7Z417 695 aaKnown RBP12.37□□□□□ -0.43
LIG3-205ENST00000585941 PAQR4Q8N4S7 273 aaPredicted RBP12.37□□□□□ -0.43
LIG3-205ENST00000585941 FGFBP3Q8TAT2 258 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 TECTBQ96PL2 329 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 NKX3-1Q99801 234 aaPredicted RBP12.37□□□□□ -0.43
LIG3-205ENST00000585941 C1QTNF5Q9BXJ0 243 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 CST11Q9H112 138 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 ZNF224Q9NZL3 707 aa12.37□□□□□ -0.43
LIG3-205ENST00000585941 TRAV6A0A075B6T7 132 aa12.36□□□□□ -0.43
LIG3-205ENST00000585941 IGKV1-9A0A0C4DH69 117 aa12.36□□□□□ -0.43
LIG3-205ENST00000585941 RAB27BO00194 218 aa12.36□□□□□ -0.43
LIG3-205ENST00000585941 PRAF2O60831 178 aa12.36□□□□□ -0.43
LIG3-205ENST00000585941 TGM6O95932 706 aa12.36□□□□□ -0.43
LIG3-205ENST00000585941 AKAIN1P0CW23 69 aa12.36□□□□□ -0.43
LIG3-205ENST00000585941 PTHLHP12272 177 aa12.36□□□□□ -0.43
LIG3-205ENST00000585941 CCR6P51684 374 aa12.36□□□□□ -0.43
LIG3-205ENST00000585941 RRAS2P62070 204 aaPredicted RBP12.36□□□□□ -0.43
LIG3-205ENST00000585941 FAPQ12884 760 aa12.36□□□□□ -0.43
LIG3-205ENST00000585941 CNN3Q15417 329 aaKnown RBP12.36□□□□□ -0.43
LIG3-205ENST00000585941 OR10K2Q6IF99 312 aa12.36□□□□□ -0.43
LIG3-205ENST00000585941 NANOS1Q8WY41 292 aaKnown RBP12.36□□□□□ -0.43
LIG3-205ENST00000585941 SEH1LQ96EE3 360 aa12.36□□□□□ -0.43
LIG3-205ENST00000585941 ST6GAL2Q96JF0 529 aa12.36□□□□□ -0.43
LIG3-205ENST00000585941 URM1Q9BTM9 101 aaKnown RBP12.36□□□□□ -0.43
LIG3-205ENST00000585941 MOV10Q9HCE1 1003 aaKnown RBP12.36□□□□□ -0.43
LIG3-205ENST00000585941 MRPL15Q9P015 296 aaKnown RBP12.36□□□□□ -0.43
LIG3-205ENST00000585941 DMXL1Q9Y485 3027 aa12.36□□□□□ -0.43
LIG3-205ENST00000585941 GMDSO60547 372 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 PEX14O75381 377 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 MELTFP08582 738 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 NAT2P11245 290 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 GTF2F2P13984 249 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 RCVRNP35243 200 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 PTGFRP43088 359 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 TAS2R19P59542 299 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 HGFACQ04756 655 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 PLP2Q04941 152 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 ZNF169Q14929 603 aaPredicted RBP12.35□□□□□ -0.43
LIG3-205ENST00000585941 ATAD3CQ5T2N8 411 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 PLXDC2Q6UX71 529 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 COLCA1Q6ZS62 124 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 TMEM229BQ8NBD8 167 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 AQP3Q92482 292 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 SPSB4Q96A44 273 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 C1orf147Q96MC9 270 aaPredicted RBP12.35□□□□□ -0.43
LIG3-205ENST00000585941 S100A13Q99584 98 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 C20orf85Q9H1P6 137 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 PLSCR2Q9NRY7 297 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 MCUBQ9NWR8 336 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 ING3Q9NXR8 418 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 CLCF1Q9UBD9 225 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 EFSO43281 561 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 SERPINA5P05154 406 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms