RNA–Protein interactions for RNA: ENST00000583976.1

SKA2-209, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 2

Gene SKA2, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-209ENST00000583976 ZNF283Q8N7M2 679 aa13.18□□□□□ -0.3
SKA2-209ENST00000583976 SIGLECL1Q8N7X8 197 aa13.18□□□□□ -0.3
SKA2-209ENST00000583976 RNF133Q8WVZ7 376 aa13.18□□□□□ -0.3
SKA2-209ENST00000583976 TAF15Q92804 592 aaKnown RBP eCLIP13.18□□□□□ -0.3
SKA2-209ENST00000583976 SPTSSAQ969W0 71 aa13.18□□□□□ -0.3
SKA2-209ENST00000583976 ZNF799Q96GE5 643 aa13.18□□□□□ -0.3
SKA2-209ENST00000583976 C1orf147Q96MC9 270 aaPredicted RBP13.18□□□□□ -0.3
SKA2-209ENST00000583976 DCLRE1CQ96SD1 692 aaKnown RBP13.18□□□□□ -0.3
SKA2-209ENST00000583976 KCNJ15Q99712 375 aa13.18□□□□□ -0.3
SKA2-209ENST00000583976 AMBNQ9NP70 447 aa13.18□□□□□ -0.3
SKA2-209ENST00000583976 MMP26Q9NRE1 261 aa13.18□□□□□ -0.3
SKA2-209ENST00000583976 TBCCD1Q9NVR7 557 aa13.18□□□□□ -0.3
SKA2-209ENST00000583976 HAO2Q9NYQ3 351 aa13.18□□□□□ -0.3
SKA2-209ENST00000583976 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.18□□□□□ -0.3
SKA2-209ENST00000583976 PCDHGB1Q9Y5G3 927 aa13.18□□□□□ -0.3
SKA2-209ENST00000583976 DNAJC9-AS1A6NH13 148 aa13.17□□□□□ -0.3
SKA2-209ENST00000583976 ZNF670-ZNF695F2Z2N8 137 aa13.17□□□□□ -0.3
SKA2-209ENST00000583976 GNAO1P09471 354 aa13.17□□□□□ -0.3
SKA2-209ENST00000583976 SLC2A1P11166 492 aa13.17□□□□□ -0.3
SKA2-209ENST00000583976 CXCR4P61073 352 aa13.17□□□□□ -0.3
SKA2-209ENST00000583976 KRTAP27-1Q3LI81 207 aa13.17□□□□□ -0.3
SKA2-209ENST00000583976 KLF17Q5JT82 389 aaPredicted RBP13.17□□□□□ -0.3
SKA2-209ENST00000583976 KRT77Q7Z794 578 aa13.17□□□□□ -0.3
SKA2-209ENST00000583976 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.17□□□□□ -0.3
SKA2-209ENST00000583976 CNIH3Q8TBE1 160 aa13.17□□□□□ -0.3
SKA2-209ENST00000583976 APH1BQ8WW43 257 aa13.17□□□□□ -0.3
SKA2-209ENST00000583976 RNFT2Q96EX2 444 aa13.17□□□□□ -0.3
SKA2-209ENST00000583976 Q96MT0 163 aa13.17□□□□□ -0.3
SKA2-209ENST00000583976 VCX3BQ9H321 246 aa13.17□□□□□ -0.3
SKA2-209ENST00000583976 BRD7Q9NPI1 651 aa13.17□□□□□ -0.3
SKA2-209ENST00000583976 PTTG3PQ9NZH4 202 aa13.17□□□□□ -0.3
SKA2-209ENST00000583976 TMEM14AQ9Y6G1 99 aa13.17□□□□□ -0.3
SKA2-209ENST00000583976 SNTNA6NMZ2 147 aa13.16□□□□□ -0.3
SKA2-209ENST00000583976 PRR32B1ATL7 298 aa13.16□□□□□ -0.3
SKA2-209ENST00000583976 H0YAE9 185 aa13.16□□□□□ -0.3
SKA2-209ENST00000583976 MAGEB4O15481 346 aaPredicted RBP13.16□□□□□ -0.3
SKA2-209ENST00000583976 TIMM8AO60220 97 aaPredicted RBP13.16□□□□□ -0.3
SKA2-209ENST00000583976 ICMTO60725 284 aa13.16□□□□□ -0.3
SKA2-209ENST00000583976 ADH4P08319 380 aa13.16□□□□□ -0.3
SKA2-209ENST00000583976 OPRL1P41146 370 aa13.16□□□□□ -0.3
SKA2-209ENST00000583976 MTNR1AP48039 350 aa13.16□□□□□ -0.3
SKA2-209ENST00000583976 RGS6P49758 472 aa13.16□□□□□ -0.3
SKA2-209ENST00000583976 GRB2P62993 217 aaKnown RBP13.16□□□□□ -0.3
SKA2-209ENST00000583976 TNFAIP6P98066 277 aaPredicted RBP13.16□□□□□ -0.3
SKA2-209ENST00000583976 POU4F2Q12837 409 aa13.16□□□□□ -0.3
SKA2-209ENST00000583976 TMED1Q13445 227 aa13.16□□□□□ -0.3
SKA2-209ENST00000583976 SMN1Q16637 294 aaKnown RBP13.16□□□□□ -0.3
SKA2-209ENST00000583976 MOGQ16653 247 aa13.16□□□□□ -0.3
SKA2-209ENST00000583976 KCTD18Q6PI47 426 aaPredicted RBP13.16□□□□□ -0.3
SKA2-209ENST00000583976 Q6ZR03 302 aa13.16□□□□□ -0.3
SKA2-209ENST00000583976 BCL6BQ8N143 479 aaPredicted RBP13.16□□□□□ -0.3
SKA2-209ENST00000583976 SETD9Q8NE22 299 aa13.16□□□□□ -0.3
SKA2-209ENST00000583976 OR10H4Q8NGA5 316 aa13.16□□□□□ -0.3
SKA2-209ENST00000583976 SGMS2Q8NHU3 365 aa13.16□□□□□ -0.3
SKA2-209ENST00000583976 APOBEC3DQ96AK3 386 aaPredicted RBP13.16□□□□□ -0.3
SKA2-209ENST00000583976 ZNF48Q96MX3 618 aaPredicted RBP13.16□□□□□ -0.3
SKA2-209ENST00000583976 EGLN1Q9GZT9 426 aa13.16□□□□□ -0.3
SKA2-209ENST00000583976 ZNF69Q9UC07 566 aa13.16□□□□□ -0.3
SKA2-209ENST00000583976 PURGQ9UJV8 347 aaKnown RBP13.16□□□□□ -0.3
SKA2-209ENST00000583976 IKZF2Q9UKS7 526 aa13.16□□□□□ -0.3
SKA2-209ENST00000583976 NPTNQ9Y639 398 aa13.16□□□□□ -0.3
SKA2-209ENST00000583976 A0A1W2PQL4 384 aaPredicted RBP13.15□□□□□ -0.3
SKA2-209ENST00000583976 C5orf63A6NC05 138 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 TRAPPC2LH3BP13 241 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 TMPRSS2O15393 492 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 WBP4O75554 376 aaKnown RBP13.15□□□□□ -0.3
SKA2-209ENST00000583976 ANXA2P07355 339 aaKnown RBP13.15□□□□□ -0.3
SKA2-209ENST00000583976 CD55P08174 381 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 DBTP11182 482 aaKnown RBP13.15□□□□□ -0.3
SKA2-209ENST00000583976 ANOS1P23352 680 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 GATA3P23771 443 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 OTX1P32242 354 aaPredicted RBP13.15□□□□□ -0.3
SKA2-209ENST00000583976 CX3CR1P49238 355 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 ISL1P61371 349 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 ZNF91Q05481 1191 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 PSG7Q13046 419 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 HLXQ14774 488 aaPredicted RBP13.15□□□□□ -0.3
SKA2-209ENST00000583976 SNAI3Q3KNW1 292 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 ARMCX4Q5H9R4 360 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 ZNF322Q6U7Q0 402 aaPredicted RBP13.15□□□□□ -0.3
SKA2-209ENST00000583976 DRAM2Q6UX65 266 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 IZUMO2Q6UXV1 221 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 COLCA1Q6ZS62 124 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 SSX6Q7RTT6 188 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 C8orf59Q8N0T1 100 aaPredicted RBP13.15□□□□□ -0.3
SKA2-209ENST00000583976 OR5L1Q8NGL2 311 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 ASB17Q8WXJ9 295 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 TFAP2CQ92754 450 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 SIGLEC11Q96RL6 698 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 TMEM106BQ9NUM4 274 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 LRP12Q9Y561 859 aa13.15□□□□□ -0.3
SKA2-209ENST00000583976 SOX21Q9Y651 276 aaPredicted RBP13.15□□□□□ -0.3
SKA2-209ENST00000583976 IGHV3OR16-10A0A075B7F0 116 aa13.14□□□□□ -0.31
SKA2-209ENST00000583976 H0YJX3 145 aa13.14□□□□□ -0.31
SKA2-209ENST00000583976 H3BSA7 217 aa13.14□□□□□ -0.31
SKA2-209ENST00000583976 TBX1O43435 398 aa13.14□□□□□ -0.31
SKA2-209ENST00000583976 FOXH1O75593 365 aa13.14□□□□□ -0.31
SKA2-209ENST00000583976 OR2T7P0C7T2 308 aa13.14□□□□□ -0.31
SKA2-209ENST00000583976 PRSS12P56730 875 aa13.14□□□□□ -0.31
SKA2-209ENST00000583976 ZNF121P58317 390 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms