RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 CX3CR1P49238 355 aa8.83□□□□□ -1
SS18-207ENST00000577636 PRKXP51817 358 aa8.83□□□□□ -1
SS18-207ENST00000577636 TPTEP56180 551 aa8.83□□□□□ -1
SS18-207ENST00000577636 CAV3P56539 151 aa8.83□□□□□ -1
SS18-207ENST00000577636 GALK2Q01415 458 aa8.83□□□□□ -1
SS18-207ENST00000577636 MFGE8Q08431 387 aaPredicted RBP8.83□□□□□ -1
SS18-207ENST00000577636 ENDOGQ14249 297 aaKnown RBP8.83□□□□□ -1
SS18-207ENST00000577636 RAB35Q15286 201 aa8.83□□□□□ -1
SS18-207ENST00000577636 SLC36A2Q495M3 483 aa8.83□□□□□ -1
SS18-207ENST00000577636 METAP1DQ6UB28 335 aaPredicted RBP8.83□□□□□ -1
SS18-207ENST00000577636 ZNF813Q6ZN06 617 aa8.83□□□□□ -1
SS18-207ENST00000577636 DPPA2Q7Z7J5 298 aa8.83□□□□□ -1
SS18-207ENST00000577636 LAX1Q8IWV1 398 aa8.83□□□□□ -1
SS18-207ENST00000577636 ELMOD2Q8IZ81 293 aa8.83□□□□□ -1
SS18-207ENST00000577636 PARP16Q8N5Y8 322 aa8.83□□□□□ -1
SS18-207ENST00000577636 CCDC54Q8NEL0 328 aa8.83□□□□□ -1
SS18-207ENST00000577636 IL17RDQ8NFM7 739 aa8.83□□□□□ -1
SS18-207ENST00000577636 RGP1Q92546 391 aaPredicted RBP8.83□□□□□ -1
SS18-207ENST00000577636 NABP1Q96AH0 204 aa8.83□□□□□ -1
SS18-207ENST00000577636 PGAM5Q96HS1 289 aa8.83□□□□□ -1
SS18-207ENST00000577636 GMPPAQ96IJ6 420 aaPredicted RBP8.83□□□□□ -1
SS18-207ENST00000577636 CCDC32Q9BV29 185 aa8.83□□□□□ -1
SS18-207ENST00000577636 RNF121Q9H920 327 aa8.83□□□□□ -1
SS18-207ENST00000577636 PLEKHA1Q9HB21 404 aa8.83□□□□□ -1
SS18-207ENST00000577636 DDX28Q9NUL7 540 aaKnown RBP8.83□□□□□ -1
SS18-207ENST00000577636 FAM206AQ9NX38 181 aa8.83□□□□□ -1
SS18-207ENST00000577636 NUFIP1Q9UHK0 495 aaKnown RBP8.83□□□□□ -1
SS18-207ENST00000577636 FBXL3Q9UKT7 428 aa8.83□□□□□ -1
SS18-207ENST00000577636 PROCRQ9UNN8 238 aa8.83□□□□□ -1
SS18-207ENST00000577636 LAMP3Q9UQV4 416 aa8.83□□□□□ -1
SS18-207ENST00000577636 SLC22A13Q9Y226 551 aa8.83□□□□□ -1
SS18-207ENST00000577636 AK6Q9Y3D8 172 aaKnown RBP8.83□□□□□ -1
SS18-207ENST00000577636 N6AMT1Q9Y5N5 214 aa8.83□□□□□ -1
SS18-207ENST00000577636 V9GY05 133 aa8.83□□□□□ -1
SS18-207ENST00000577636 PCNX3Q9H6A9 2034 aa8.82□□□□□ -1
SS18-207ENST00000577636 TRBV5-7A0A0A0MS05 114 aa8.82□□□□□ -1
SS18-207ENST00000577636 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.82□□□□□ -1
SS18-207ENST00000577636 ISPDA4D126 451 aa8.82□□□□□ -1
SS18-207ENST00000577636 MEGF11A6BM72 1044 aa8.82□□□□□ -1
SS18-207ENST00000577636 RPL36A-HNRNPH2H7BZ11 118 aa8.82□□□□□ -1
SS18-207ENST00000577636 SYT7O43581 403 aa8.82□□□□□ -1
SS18-207ENST00000577636 SRSF10O75494 262 aaKnown RBP8.82□□□□□ -1
SS18-207ENST00000577636 PNPP00491 289 aa8.82□□□□□ -1
SS18-207ENST00000577636 CRHP06850 196 aa8.82□□□□□ -1
SS18-207ENST00000577636 ERCC1P07992 297 aaPredicted RBP8.82□□□□□ -1
SS18-207ENST00000577636 B4GALT1P15291 398 aa8.82□□□□□ -1
SS18-207ENST00000577636 ZNF20P17024 532 aa8.82□□□□□ -1
SS18-207ENST00000577636 APEX1P27695 318 aaKnown RBP8.82□□□□□ -1
SS18-207ENST00000577636 LOXP28300 417 aaPredicted RBP8.82□□□□□ -1
SS18-207ENST00000577636 CAPZA1P52907 286 aa8.82□□□□□ -1
SS18-207ENST00000577636 HIST1H3AP68431 136 aa8.82□□□□□ -1
SS18-207ENST00000577636 KRTAP1-1Q07627 177 aa8.82□□□□□ -1
SS18-207ENST00000577636 BEX5Q5H9J7 111 aa8.82□□□□□ -1
SS18-207ENST00000577636 CEP78Q5JTW2 689 aa8.82□□□□□ -1
SS18-207ENST00000577636 HIST2H3PS2Q5TEC6 136 aa8.82□□□□□ -1
SS18-207ENST00000577636 TSPO2Q5TGU0 170 aa8.82□□□□□ -1
SS18-207ENST00000577636 GLT8D1Q68CQ7 371 aa8.82□□□□□ -1
SS18-207ENST00000577636 BAIAP2L2Q6UXY1 529 aa8.82□□□□□ -1
SS18-207ENST00000577636 HIST2H3AQ71DI3 136 aa8.82□□□□□ -1
SS18-207ENST00000577636 LRRC28Q86X40 367 aaPredicted RBP8.82□□□□□ -1
SS18-207ENST00000577636 MED12LQ86YW9 2145 aa8.82□□□□□ -1
SS18-207ENST00000577636 WFDC8Q8IUA0 241 aa8.82□□□□□ -1
SS18-207ENST00000577636 RDH10Q8IZV5 341 aa8.82□□□□□ -1
SS18-207ENST00000577636 OR8H2Q8N162 312 aa8.82□□□□□ -1
SS18-207ENST00000577636 SAMD12Q8N8I0 201 aa8.82□□□□□ -1
SS18-207ENST00000577636 OR5D14Q8NGL3 314 aa8.82□□□□□ -1
SS18-207ENST00000577636 OR10S1Q8NGN2 331 aa8.82□□□□□ -1
SS18-207ENST00000577636 TRMT10AQ8TBZ6 339 aaKnown RBP8.82□□□□□ -1
SS18-207ENST00000577636 AKAP1Q92667 903 aaKnown RBP eCLIP8.82□□□□□ -1
SS18-207ENST00000577636 RNF166Q96A37 237 aaPredicted RBP8.82□□□□□ -1
SS18-207ENST00000577636 PLPPR2Q96GM1 343 aa8.82□□□□□ -1
SS18-207ENST00000577636 SH3GL3Q99963 347 aa8.82□□□□□ -1
SS18-207ENST00000577636 REG4Q9BYZ8 158 aa8.82□□□□□ -1
SS18-207ENST00000577636 PPIL3Q9H2H8 161 aaKnown RBP8.82□□□□□ -1
SS18-207ENST00000577636 G6PC2Q9NQR9 355 aa8.82□□□□□ -1
SS18-207ENST00000577636 RABL2AQ9UBK7 228 aaPredicted RBP8.82□□□□□ -1
SS18-207ENST00000577636 CLEC4AQ9UMR7 237 aa8.82□□□□□ -1
SS18-207ENST00000577636 RABL2BQ9UNT1 228 aa8.82□□□□□ -1
SS18-207ENST00000577636 FOXJ3Q9UPW0 622 aa8.82□□□□□ -1
SS18-207ENST00000577636 CHD3Q12873 2000 aaKnown RBP8.81□□□□□ -1
SS18-207ENST00000577636 USF3Q68DE3 2245 aa8.81□□□□□ -1
SS18-207ENST00000577636 SHISA3A0PJX4 238 aa8.81□□□□□ -1
SS18-207ENST00000577636 OR6C6A6NF89 314 aa8.81□□□□□ -1
SS18-207ENST00000577636 IFITM5A6NNB3 132 aa8.81□□□□□ -1
SS18-207ENST00000577636 F5H5K5 113 aa8.81□□□□□ -1
SS18-207ENST00000577636 AIPO00170 330 aa8.81□□□□□ -1
SS18-207ENST00000577636 P2RY10O00398 339 aa8.81□□□□□ -1
SS18-207ENST00000577636 TBX1O43435 398 aa8.81□□□□□ -1
SS18-207ENST00000577636 DOK2O60496 412 aa8.81□□□□□ -1
SS18-207ENST00000577636 HPGDSO60760 199 aa8.81□□□□□ -1
SS18-207ENST00000577636 SS18L1O75177 396 aaPredicted RBP8.81□□□□□ -1
SS18-207ENST00000577636 MTRF1O75570 445 aaKnown RBP8.81□□□□□ -1
SS18-207ENST00000577636 UPK1BO75841 260 aa8.81□□□□□ -1
SS18-207ENST00000577636 WNT11O96014 354 aa8.81□□□□□ -1
SS18-207ENST00000577636 IGHV3-9P01782 118 aa8.81□□□□□ -1
SS18-207ENST00000577636 APOA1P02647 267 aa8.81□□□□□ -1
SS18-207ENST00000577636 MAS1P04201 325 aa8.81□□□□□ -1
SS18-207ENST00000577636 OCMP0CE72 109 aaPredicted RBP8.81□□□□□ -1
SS18-207ENST00000577636 ARR3P36575 388 aa8.81□□□□□ -1
SS18-207ENST00000577636 GNALP38405 381 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms