RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 GK2Q14410 553 aaPredicted RBP13.17□□□□□ -0.3
SS18-206ENST00000577572 TMEM42Q69YG0 159 aa13.17□□□□□ -0.3
SS18-206ENST00000577572 MYO7BQ6PIF6 2116 aa13.17□□□□□ -0.3
SS18-206ENST00000577572 RFPL4BQ6ZWI9 263 aa13.17□□□□□ -0.3
SS18-206ENST00000577572 MYPOPQ86VE0 399 aaPredicted RBP13.17□□□□□ -0.3
SS18-206ENST00000577572 ZNF101Q8IZC7 436 aa13.17□□□□□ -0.3
SS18-206ENST00000577572 NUP37Q8NFH4 326 aa13.17□□□□□ -0.3
SS18-206ENST00000577572 ACOT12Q8WYK0 555 aa13.17□□□□□ -0.3
SS18-206ENST00000577572 HAVCR1Q96D42 359 aa13.17□□□□□ -0.3
SS18-206ENST00000577572 CPNE2Q96FN4 548 aaPredicted RBP13.17□□□□□ -0.3
SS18-206ENST00000577572 WFIKKN1Q96NZ8 548 aa13.17□□□□□ -0.3
SS18-206ENST00000577572 CHST5Q9GZS9 411 aa13.17□□□□□ -0.3
SS18-206ENST00000577572 ESRP2Q9H6T0 727 aaKnown RBP13.17□□□□□ -0.3
SS18-206ENST00000577572 RNF167Q9H6Y7 350 aa13.17□□□□□ -0.3
SS18-206ENST00000577572 TMEM138Q9NPI0 162 aa13.17□□□□□ -0.3
SS18-206ENST00000577572 NPAP1Q9NZP6 1156 aa13.17□□□□□ -0.3
SS18-206ENST00000577572 A0A075B6Q4 140 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 ZNF816-ZNF321PA0A0X1KG74 233 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 C5orf63A6NC05 138 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 SULT1B1O43704 296 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 ZG16O60844 167 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 CST4P01036 141 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 PRB1P04280 392 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 GLRXP35754 106 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 CAPZA1P52907 286 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 SCAND1P57086 179 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 GFOD2Q3B7J2 385 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 ZNF718Q3SXZ3 478 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 CLVS2Q5SYC1 327 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 FAM27D1Q5T7N8 215 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 MBNL2Q5VZF2 373 aaKnown RBP13.16□□□□□ -0.3
SS18-206ENST00000577572 LRRTM1Q86UE6 522 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 OR1J1Q8NGS3 322 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 OR2AE1Q8NHA4 323 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 SPSB1Q96BD6 273 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 ADAT3Q96EY9 351 aaPredicted RBP13.16□□□□□ -0.3
SS18-206ENST00000577572 C1QTNF6Q9BXI9 259 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 SLIRPQ9GZT3 109 aaKnown RBP13.16□□□□□ -0.3
SS18-206ENST00000577572 NXF2Q9GZY0 626 aaKnown RBP13.16□□□□□ -0.3
SS18-206ENST00000577572 SLC22A4Q9H015 551 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 MMP27Q9H306 513 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 PIGLQ9Y2B2 252 aa13.16□□□□□ -0.3
SS18-206ENST00000577572 NBASA2RRP1 2371 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 A0A1W2PPK0 400 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 SHISA3A0PJX4 238 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 NKX2-6A6NCS4 301 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 WIPF3A6NGB9 483 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 GGT3PA6NGU5 568 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 TUBAL3A6NHL2 446 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 CD300LBA8K4G0 201 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 VSTM5A8MXK1 200 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 PRKACBP22694 351 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 BDKRB2P30411 391 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 NKX6-1P78426 367 aaPredicted RBP13.15□□□□□ -0.3
SS18-206ENST00000577572 ZNF404Q494X3 552 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 CEP78Q5JTW2 689 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 GLT8D1Q68CQ7 371 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 WFDC8Q8IUA0 241 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 DNAAF1Q8NEP3 725 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 OR1M1Q8NGA1 313 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 MARS2Q96GW9 593 aaKnown RBP13.15□□□□□ -0.3
SS18-206ENST00000577572 UQCC2Q9BRT2 126 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 DCUN1D5Q9BTE7 237 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 MRPL15Q9P015 296 aaKnown RBP13.15□□□□□ -0.3
SS18-206ENST00000577572 KCNN3Q9UGI6 736 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 NOP16Q9Y3C1 178 aaKnown RBP13.15□□□□□ -0.3
SS18-206ENST00000577572 MPC1Q9Y5U8 109 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 V9GY05 133 aa13.15□□□□□ -0.3
SS18-206ENST00000577572 CFAP46Q8IYW2 2715 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 TRAV8-7A0A075B6U6 113 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 ANXA2P2A6NMY6 339 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 IQCF6A8MYZ5 107 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 AIPO00170 330 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 MAGEB3O15480 346 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 GOSR1O95249 250 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 PRF1P14222 555 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 KITLGP21583 273 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 ANOS1P23352 680 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 ACKR3P25106 362 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 CALCRP30988 508 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 TGFBR1P36897 503 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 MAGEB1P43366 347 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 CNN3Q15417 329 aaKnown RBP13.14□□□□□ -0.31
SS18-206ENST00000577572 MOGQ16653 247 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 BEX5Q5H9J7 111 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 NCMAPQ5T1S8 102 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 ASPHD2Q6ICH7 369 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 SFXN4Q6P4A7 337 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 C22orf34Q6ZV56 151 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 SLC25A40Q8TBP6 338 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 KLF14Q8TD94 323 aaPredicted RBP13.14□□□□□ -0.31
SS18-206ENST00000577572 ZNF442Q9H7R0 627 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 TAS2R4Q9NYW5 299 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 PTTG3PQ9NZH4 202 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 ABRACLQ9P1F3 81 aa13.14□□□□□ -0.31
SS18-206ENST00000577572 CGGBP1Q9UFW8 167 aaPredicted RBP13.14□□□□□ -0.31
SS18-206ENST00000577572 KMT2BQ9UMN6 2715 aaPredicted RBP13.14□□□□□ -0.31
SS18-206ENST00000577572 DPRXA6NFQ7 191 aa13.13□□□□□ -0.31
SS18-206ENST00000577572 IFITM5A6NNB3 132 aa13.13□□□□□ -0.31
SS18-206ENST00000577572 ANKRD30BLA7E2S9 258 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms