RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 PDCD1Q15116 288 aa14.15□□□□□ -0.14
CLN3-216ENST00000565316 LINC01590Q5TEZ4 76 aa14.15□□□□□ -0.14
CLN3-216ENST00000565316 METTL11BQ5VVY1 283 aa14.15□□□□□ -0.14
CLN3-216ENST00000565316 FIP1L1Q6UN15 594 aaKnown RBP14.15□□□□□ -0.14
CLN3-216ENST00000565316 AQP11Q8NBQ7 271 aa14.15□□□□□ -0.14
CLN3-216ENST00000565316 WFDC12Q8WWY7 111 aa14.15□□□□□ -0.14
CLN3-216ENST00000565316 GATAD2BQ8WXI9 593 aa14.15□□□□□ -0.14
CLN3-216ENST00000565316 DGCR6LQ9BY27 220 aa14.15□□□□□ -0.14
CLN3-216ENST00000565316 TBC1D23Q9NUY8 699 aa14.15□□□□□ -0.14
CLN3-216ENST00000565316 IGHV1-69DA0A0B4J2H0 117 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 TCRBV5S2A0A599 114 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 DVL1O14640 695 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 ATP8B1O43520 1251 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 IGHV1-69P01742 117 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 SLC15A1P46059 708 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 BLVRAP53004 296 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 RPL15P61313 204 aaKnown RBP14.15□□□□□ -0.15
CLN3-216ENST00000565316 GRB2P62993 217 aaKnown RBP14.15□□□□□ -0.15
CLN3-216ENST00000565316 CYP2R1Q6VVX0 501 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 BTN2A1Q7KYR7 527 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 SLC16A9Q7RTY1 509 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 PRSS45Q7RTY3 260 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 WDR86Q86TI4 376 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 OR2T33Q8NG76 320 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 SSMEM1Q8WWF3 244 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 SGK3Q96BR1 496 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 TOR3AQ9H497 397 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 MAGIXQ9H6Y5 334 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 RNPEPL1Q9HAU8 725 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 ACOXLQ9NUZ1 547 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 VNN3Q9NY84 501 aa14.15□□□□□ -0.15
CLN3-216ENST00000565316 hCG_1807616A0A1W2PRN6 198 aa14.14□□□□□ -0.15
CLN3-216ENST00000565316 A6NLC8 198 aa14.14□□□□□ -0.15
CLN3-216ENST00000565316 ANKRD30BLA7E2S9 258 aa14.14□□□□□ -0.15
CLN3-216ENST00000565316 KNG1P01042 644 aa14.14□□□□□ -0.15
CLN3-216ENST00000565316 CRYBA1P05813 215 aa14.14□□□□□ -0.15
CLN3-216ENST00000565316 CLUP10909 449 aa14.14□□□□□ -0.15
CLN3-216ENST00000565316 MUC1P15941 1255 aaPredicted RBP14.14□□□□□ -0.15
CLN3-216ENST00000565316 MICAQ29983 383 aa14.14□□□□□ -0.15
CLN3-216ENST00000565316 OLFML2AQ68BL7 652 aa14.14□□□□□ -0.15
CLN3-216ENST00000565316 PIGWQ7Z7B1 504 aa14.14□□□□□ -0.15
CLN3-216ENST00000565316 KIR3DL3Q8N743 410 aa14.14□□□□□ -0.15
CLN3-216ENST00000565316 RNF133Q8WVZ7 376 aa14.14□□□□□ -0.15
CLN3-216ENST00000565316 SP140LQ9H930 580 aa14.14□□□□□ -0.15
CLN3-216ENST00000565316 TNFRSF19Q9NS68 423 aa14.14□□□□□ -0.15
CLN3-216ENST00000565316 RPUSD1Q9UJJ7 312 aaKnown RBP14.14□□□□□ -0.15
CLN3-216ENST00000565316 ARL2BPQ9Y2Y0 163 aa14.14□□□□□ -0.15
CLN3-216ENST00000565316 N6AMT1Q9Y5N5 214 aa14.14□□□□□ -0.15
CLN3-216ENST00000565316 IGHV3OR15-7A0A075B7D8 119 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 hCG_38984A0A1B0GV85 526 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 CLPSL1A2RUU4 121 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP14.13□□□□□ -0.15
CLN3-216ENST00000565316 IFNGP01579 166 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 APOC1P02654 83 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 GRK5P34947 590 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 CX3CR1P49238 355 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 ARF6P62330 175 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 SRSF4Q08170 494 aaKnown RBP14.13□□□□□ -0.15
CLN3-216ENST00000565316 POU4F2Q12837 409 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 PPP1R8Q12972 351 aaKnown RBP14.13□□□□□ -0.15
CLN3-216ENST00000565316 KLHL12Q53G59 568 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 CD300LDQ6UXZ3 194 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 RHOUQ7L0Q8 258 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 LDLRAD3Q86YD5 345 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 LY6G5BQ8NDX9 201 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 OR1M1Q8NGA1 313 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 OR52H1Q8NGJ2 320 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 OR6K6Q8NGW6 343 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 OR8S1Q8NH09 359 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 TBC1D15Q8TC07 691 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 LRRC29Q8WV35 223 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 DYRK2Q92630 601 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 LHX4Q969G2 390 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 REEP6Q96HR9 211 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 DMRTB1Q96MA1 342 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 CITED1Q99966 193 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 TLNRD1Q9H1K6 362 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 CNTD2Q9H8S5 307 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 CMC2Q9NRP2 79 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 ARMC1Q9NVT9 282 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 PDP1Q9P0J1 537 aaPredicted RBP14.13□□□□□ -0.15
CLN3-216ENST00000565316 KPTNQ9Y664 436 aa14.13□□□□□ -0.15
CLN3-216ENST00000565316 WNK1Q9H4A3 2382 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 RIIAD1A6NNX1 92 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 TBX1O43435 398 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 TIPRLO75663 272 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 SOX14O95416 240 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 ANXA2P07355 339 aaKnown RBP14.12□□□□□ -0.15
CLN3-216ENST00000565316 CFL1P23528 166 aaKnown RBP14.12□□□□□ -0.15
CLN3-216ENST00000565316 OPRL1P41146 370 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 GSK3AP49840 483 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 MNAT1P51948 309 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 EIF2B1Q14232 305 aaKnown RBP14.12□□□□□ -0.15
CLN3-216ENST00000565316 TIGD6Q17RP2 521 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 MICBQ29980 383 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 CDONQ4KMG0 1287 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 PDLIM3Q53GG5 364 aaPredicted RBP14.12□□□□□ -0.15
CLN3-216ENST00000565316 OR2T5Q6IEZ7 315 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 LCN8Q6JVE9 175 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 WDR82Q6UXN9 313 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms