RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 ROM1Q03395 351 aa11.28□□□□□ -0.6
CLK3-216ENST00000564468 MAB21L1Q13394 359 aa11.28□□□□□ -0.6
CLK3-216ENST00000564468 TMED1Q13445 227 aa11.28□□□□□ -0.6
CLK3-216ENST00000564468 ZNF829Q3KNS6 432 aaPredicted RBP11.28□□□□□ -0.6
CLK3-216ENST00000564468 OR8S1Q8NH09 359 aa11.28□□□□□ -0.6
CLK3-216ENST00000564468 ZNF420Q8TAQ5 688 aaPredicted RBP11.28□□□□□ -0.6
CLK3-216ENST00000564468 Q8TCH9 128 aa11.28□□□□□ -0.6
CLK3-216ENST00000564468 STMN2Q93045 179 aa11.28□□□□□ -0.6
CLK3-216ENST00000564468 OR8B4Q96RC9 309 aa11.28□□□□□ -0.6
CLK3-216ENST00000564468 SIGLEC11Q96RL6 698 aa11.28□□□□□ -0.6
CLK3-216ENST00000564468 PATZ1Q9HBE1 687 aaKnown RBP11.28□□□□□ -0.6
CLK3-216ENST00000564468 LPAR2Q9HBW0 351 aa11.28□□□□□ -0.6
CLK3-216ENST00000564468 S100A14Q9HCY8 104 aa11.28□□□□□ -0.6
CLK3-216ENST00000564468 ABCB9Q9NP78 766 aa11.28□□□□□ -0.6
CLK3-216ENST00000564468 IMPAD1Q9NX62 359 aa11.28□□□□□ -0.6
CLK3-216ENST00000564468 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.28□□□□□ -0.6
CLK3-216ENST00000564468 IKZF2Q9UKS7 526 aa11.28□□□□□ -0.6
CLK3-216ENST00000564468 PPIAL4EA0A075B759 164 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 hCG_38984A0A1B0GV85 526 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 TMEM269A0A1B0GVZ9 245 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 C5orf63A6NC05 138 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 PPIAL4DF5H284 164 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 EI24O14681 340 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 PPIAL4FP0DN26 164 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 GATA3P23771 443 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 HTR1FP30939 366 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 THBS2P35442 1172 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 POLR2IP36954 125 aaKnown RBP11.27□□□□□ -0.61
CLK3-216ENST00000564468 SRP14P37108 136 aaKnown RBP11.27□□□□□ -0.61
CLK3-216ENST00000564468 GSK3AP49840 483 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 HCCSP53701 268 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 SCGB2A2Q13296 93 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 KCNJ8Q15842 424 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 GFOD2Q3B7J2 385 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 SLC35F2Q8IXU6 374 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 HRASLS5Q96KN8 279 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 TRIM36Q9NQ86 728 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 CLN6Q9NWW5 311 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 DCAF16Q9NXF7 216 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 MIOXQ9UGB7 285 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 KLHDC2Q9Y2U9 406 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 PPIAL4AQ9Y536 164 aa11.27□□□□□ -0.61
CLK3-216ENST00000564468 A0A0G2JMP0 313 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 A0A0U1RQV5 110 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 A0A0X1KG70 313 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 ANXA2P2A6NMY6 339 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 SNTNA6NMZ2 147 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 J3QLI3 93 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 M0R129 80 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 PLPP2O43688 288 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 PTBP3O95758 552 aaKnown RBP11.26□□□□□ -0.61
CLK3-216ENST00000564468 CYB5R3P00387 301 aaPredicted RBP11.26□□□□□ -0.61
CLK3-216ENST00000564468 PNPP00491 289 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 OR2T7P0C7T2 308 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 ATP6V1B1P15313 513 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 ATP6V1E1P36543 226 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 CXCR4P61073 352 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 IL5RAQ01344 420 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 EGR3Q06889 387 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 ZMYND11Q15326 602 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 OR8B8Q15620 311 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 ZNF322Q6U7Q0 402 aaPredicted RBP11.26□□□□□ -0.61
CLK3-216ENST00000564468 ZBTB49Q6ZSB9 765 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 BCDIN3DQ7Z5W3 292 aaKnown RBP11.26□□□□□ -0.61
CLK3-216ENST00000564468 PQLC1Q8N2U9 271 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 CBR4Q8N4T8 237 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 OR4M2Q8NGB6 313 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 OR8B12Q8NGG6 310 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 OR2T27Q8NH04 317 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 FAM81AQ8TBF8 368 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 MOB1AQ9H8S9 216 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 ADGRL4Q9HBW9 690 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 UFSP2Q9NUQ7 469 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 ZNF319Q9P2F9 582 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 RNF7Q9UBF6 113 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.26□□□□□ -0.61
CLK3-216ENST00000564468 COPS3Q9UNS2 423 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 MPC1Q9Y5U8 109 aa11.26□□□□□ -0.61
CLK3-216ENST00000564468 ANK3Q12955 4377 aaKnown RBP11.25□□□□□ -0.61
CLK3-216ENST00000564468 PPIAL4CA0A0B4J2A2 164 aa11.25□□□□□ -0.61
CLK3-216ENST00000564468 IGHV3-64DA0A0J9YX35 117 aa11.25□□□□□ -0.61
CLK3-216ENST00000564468 A6NLC8 198 aa11.25□□□□□ -0.61
CLK3-216ENST00000564468 FAM20BO75063 409 aa11.25□□□□□ -0.61
CLK3-216ENST00000564468 ANOS1P23352 680 aa11.25□□□□□ -0.61
CLK3-216ENST00000564468 MAP2K3P46734 347 aa11.25□□□□□ -0.61
CLK3-216ENST00000564468 ESCO2Q56NI9 601 aa11.25□□□□□ -0.61
CLK3-216ENST00000564468 DCAF12L2Q5VW00 463 aa11.25□□□□□ -0.61
CLK3-216ENST00000564468 PRAMEF6Q5VXH4 476 aa11.25□□□□□ -0.61
CLK3-216ENST00000564468 MEDAGQ5VYS4 303 aa11.25□□□□□ -0.61
CLK3-216ENST00000564468 FAHD2BQ6P2I3 314 aaPredicted RBP11.25□□□□□ -0.61
CLK3-216ENST00000564468 NLRC3Q7RTR2 1065 aa11.25□□□□□ -0.61
CLK3-216ENST00000564468 OR51G2Q8NGK0 314 aa11.25□□□□□ -0.61
CLK3-216ENST00000564468 EME1Q96AY2 570 aa11.25□□□□□ -0.61
CLK3-216ENST00000564468 FAHD2AQ96GK7 314 aa11.25□□□□□ -0.61
CLK3-216ENST00000564468 MICU1Q9BPX6 476 aa11.25□□□□□ -0.61
CLK3-216ENST00000564468 PAPOLGQ9BWT3 736 aaKnown RBP11.25□□□□□ -0.61
CLK3-216ENST00000564468 TMEM165Q9HC07 324 aa11.25□□□□□ -0.61
CLK3-216ENST00000564468 FAM206AQ9NX38 181 aa11.25□□□□□ -0.61
CLK3-216ENST00000564468 LRCH1Q9Y2L9 728 aa11.25□□□□□ -0.61
CLK3-216ENST00000564468 CEACAM18A8MTB9 384 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms